##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139610_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7121370 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.377428640837365 32.0 25.0 33.0 18.0 33.0 2 31.165662927217657 33.0 31.0 33.0 27.0 33.0 3 30.560988967010562 31.0 29.0 33.0 27.0 33.0 4 31.768920446487122 33.0 31.0 33.0 29.0 33.0 5 32.108125121991975 33.0 32.0 33.0 31.0 33.0 6 35.18646889573214 37.0 35.0 38.0 29.0 38.0 7 36.58264505284798 38.0 37.0 38.0 34.0 38.0 8 36.1738838172992 38.0 36.0 38.0 33.0 38.0 9 36.76283425801496 38.0 38.0 38.0 34.0 38.0 10-11 37.05885728448318 38.0 38.0 38.0 35.5 38.0 12-13 37.19480415987373 38.0 38.0 38.0 36.0 38.0 14-15 37.22599654280005 38.0 38.0 38.0 36.0 38.0 16-17 37.297799650909866 38.0 38.0 38.0 36.5 38.0 18-19 37.349582804993986 38.0 38.0 38.0 37.0 38.0 20-21 37.38768039773473 38.0 38.0 38.0 37.0 38.0 22-23 37.410650036211024 38.0 38.0 38.0 37.0 38.0 24-25 37.433192116128005 38.0 38.0 38.0 37.0 38.0 26-27 37.411551713403554 38.0 38.0 38.0 37.0 38.0 28-29 37.39671500018427 38.0 38.0 38.0 37.0 38.0 30-31 37.40018004458941 38.0 38.0 38.0 37.0 38.0 32-33 37.389631851411465 38.0 38.0 38.0 37.0 38.0 34-35 37.36818948284802 38.0 38.0 38.0 37.0 38.0 36-37 37.348856140741916 38.0 38.0 38.0 37.0 38.0 38-39 37.33156508312729 38.0 38.0 38.0 37.0 38.0 40-41 37.333457691851876 38.0 38.0 38.0 37.0 38.0 42-43 37.29403884047802 38.0 38.0 38.0 37.0 38.0 44-45 37.25193550509749 38.0 38.0 38.0 37.0 38.0 46-47 37.22082771818633 38.0 38.0 38.0 37.0 38.0 48-49 37.1692826258832 38.0 38.0 38.0 37.0 38.0 50-51 37.13887995881703 38.0 38.0 38.0 37.0 38.0 52-53 37.12885622936256 38.0 38.0 38.0 36.0 38.0 54-55 37.105793503438974 38.0 38.0 38.0 36.0 38.0 56-57 37.053434431646735 38.0 38.0 38.0 36.0 38.0 58-59 37.03029281734398 38.0 38.0 38.0 36.0 38.0 60-61 37.04892926046965 38.0 38.0 38.0 36.0 38.0 62-63 37.05882395142382 38.0 38.0 38.0 36.0 38.0 64-65 37.06846033507464 38.0 38.0 38.0 36.0 38.0 66-67 37.06805075383683 38.0 38.0 38.0 36.0 38.0 68-69 37.0581726191279 38.0 38.0 38.0 36.0 38.0 70-71 37.05273741769189 38.0 38.0 38.0 36.0 38.0 72-73 37.046266218022865 38.0 38.0 38.0 36.0 38.0 74-75 37.02775516152838 38.0 38.0 38.0 36.0 38.0 76-77 37.00344576111822 38.0 38.0 38.0 36.0 38.0 78-79 37.008270250608945 38.0 38.0 38.0 36.0 38.0 80-81 37.00473942519294 38.0 38.0 38.0 36.0 38.0 82-83 36.95194937535315 38.0 38.0 38.0 36.0 38.0 84-85 36.93190426607737 38.0 38.0 38.0 35.0 38.0 86-87 36.9337912415928 38.0 38.0 38.0 35.0 38.0 88-89 36.91629746236471 38.0 38.0 38.0 35.0 38.0 90-91 36.88831051471517 38.0 38.0 38.0 35.0 38.0 92-93 36.872429283067866 38.0 38.0 38.0 35.0 38.0 94-95 36.84667841263243 38.0 38.0 38.0 35.0 38.0 96-97 36.807717230417396 38.0 38.0 38.0 35.0 38.0 98-99 36.77790428908514 38.0 38.0 38.0 35.0 38.0 100 35.352149027435374 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 9.0 20 26.0 21 100.0 22 375.0 23 1284.0 24 3006.0 25 6141.0 26 11423.0 27 18936.0 28 29458.0 29 43203.0 30 58351.0 31 76941.0 32 101133.0 33 139623.0 34 213193.0 35 403009.0 36 1219443.0 37 4795713.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50006248797633 19.20466146261183 14.413237902257572 24.88203814715427 2 14.346941925162692 20.466560229811485 43.123412873560575 22.06308497146525 3 18.10884531808246 25.967023532111288 30.697515179583768 25.22661597022249 4 12.284139147383158 17.791871507869974 39.664025320970545 30.259964023776327 5 13.082511463397031 37.296798000157835 35.827486371286845 13.793204165158294 6 29.28794640788413 38.07624289003792 18.90833558712075 13.7274751149572 7 26.26483387325753 33.015192301481314 23.138469142875596 17.58150468238555 8 24.104491130217923 36.65355121275822 21.2909032952929 17.951054361730957 9 25.653659338020635 16.997866983459645 21.697299817310434 35.65117386120929 10-11 23.876248530830445 26.901509119733984 29.042410378901813 20.17983197053376 12-13 24.90895712482289 24.73671498602095 29.168460563065814 21.185867326090346 14-15 22.24199837952529 25.959920633248938 27.094161657096876 24.703919330128894 16-17 21.259827814030167 29.187017385699658 27.859084698590298 21.694070101679873 18-19 21.233786476478542 27.98455212971661 30.020108490360702 20.76155290344414 20-21 22.206579990631518 27.03238166670529 29.96041920806111 20.800619134602083 22-23 21.94447812520241 26.966148004849465 29.8233378288364 21.266036041111725 24-25 21.587199087094568 27.266451814410093 29.94584191319458 21.20050718530076 26-27 21.45657112709646 27.38386079503801 29.916580880249473 21.24298719761606 28-29 21.300206610073545 27.250059095249448 30.10768100394899 21.342053290728018 30-31 21.71458100761666 27.157708731398845 29.951526501127752 21.17618375985674 32-33 21.38673198937122 27.388156616324576 29.863834302667136 21.361277091637067 34-35 21.575079783689286 27.293040164043443 29.916784331325918 21.215095720941353 36-37 21.534565485611733 27.239856642566046 29.791433805790913 21.4341440660313 38-39 21.29942926143559 27.365883753881253 29.926571575373146 21.40811540931001 40-41 21.552185041688475 27.18831862381585 29.94452309330261 21.31497324119307 42-43 21.597700032943905 27.200102424142486 29.629046950495315 21.573150592418298 44-45 21.49448558864305 27.470465262688016 29.481256474528482 21.55379267414045 46-47 21.72805949709689 27.404689829800542 29.078134943349294 21.789115729753274 48-49 21.616641622119563 27.552218087530143 28.993749178854465 21.837391111495826 50-51 21.586505229143818 27.7157138330075 28.77588465183234 21.92189628601634 52-53 21.79884360317694 27.738092519588324 28.64711290227216 21.815950974962572 54-55 21.871480412312923 27.736489727816355 28.546082637097598 21.845947222773123 56-57 21.840469620019917 27.844396276387677 28.35374489325974 21.961389210332662 58-59 21.63755940273418 27.78300756451579 28.702921733602178 21.876511299147854 60-61 21.817897658221202 28.04276953164264 28.43404879029429 21.705284019841862 62-63 21.61161056643333 28.095894991517827 28.548955156823304 21.743539285225534 64-65 21.588479559039662 27.947920231440282 28.5744429050916 21.889157304428455 66-67 21.697446614219505 28.036484544160324 28.298198490759013 21.96787035086116 68-69 21.703865979918664 27.945771643088364 28.5054976664881 21.84486471050487 70-71 21.75247132493171 27.665635985911695 28.596794294980683 21.985098394175914 72-73 21.85246180347712 27.75476236897892 28.43807597583657 21.95469985170739 74-75 21.720894247447262 27.860822644471366 28.368000309679324 22.05028279840204 76-77 21.859653862796403 27.82191542860658 28.273513471571043 22.04491723702597 78-79 21.875502763497575 27.781689879386263 28.21214383128857 22.13066352582759 80-81 21.834882680562362 27.96734992224702 28.090102716982813 22.107664680207805 82-83 22.018399488049536 27.88811918357526 28.14337874260502 21.950102585770185 84-85 21.985062041490462 27.919481408163893 28.044814791574396 22.050641758771253 86-87 21.85394072360818 28.059029243202765 28.19101475814451 21.896015275044547 88-89 21.975352105085218 27.9830081874397 28.110837637196628 21.930802070278453 90-91 22.01877633435716 28.05712547127137 28.074754094003186 21.849344100368285 92-93 22.104062618853416 28.046021965361046 28.00966171313511 21.840253702650433 94-95 21.906845109981827 28.032656606992944 28.079471682089896 21.981026600935326 96-97 22.044467998892518 28.129249356444685 28.137478229629725 21.688804415033072 98-99 22.98490060521921 30.033838729556507 28.401109060268208 18.58015160495608 100 29.24564579576774 40.97016723436906 29.784186969863203 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2633.0 1 2197.5 2 1867.0 3 2313.0 4 3383.5 5 4933.0 6 5970.5 7 6300.5 8 6194.0 9 6044.0 10 6207.5 11 7273.0 12 9500.0 13 14619.5 14 23352.5 15 33052.0 16 40659.5 17 43946.0 18 43849.5 19 39990.0 20 34813.5 21 30887.5 22 28960.5 23 30795.0 24 36496.5 25 46078.0 26 59610.0 27 74884.5 28 89189.0 29 105785.5 30 123784.5 31 140770.0 32 163224.5 33 189281.0 34 210576.5 35 231869.5 36 256689.5 37 272756.0 38 283825.0 39 291758.5 40 297476.0 41 299756.5 42 298479.5 43 306813.0 44 313988.0 45 311785.5 46 304185.5 47 297231.5 48 292965.5 49 286768.0 50 278053.0 51 267407.0 52 254033.0 53 237925.5 54 220380.0 55 202888.5 56 184476.0 57 165717.5 58 147705.5 59 128216.5 60 107686.0 61 87303.0 62 68142.0 63 52415.5 64 40317.5 65 30446.0 66 22052.5 67 16292.5 68 12208.5 69 8882.0 70 6428.5 71 4498.5 72 3067.0 73 2079.0 74 1385.5 75 910.5 76 601.0 77 390.0 78 264.0 79 176.5 80 128.0 81 98.0 82 74.5 83 52.5 84 32.5 85 20.5 86 15.5 87 11.5 88 7.5 89 5.0 90 3.5 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005659023474415738 3 0.00410033462662381 4 0.0 5 1.1233793497599478E-4 6 3.3701380492798434E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.6863988210947975E-4 26-27 0.0016095676637996915 28-29 0.00628715637332347 30-31 0.0021408106968423325 32-33 0.005189564188872176 34-35 0.0025082899336585657 36-37 9.471613574118367E-4 38-39 3.586526824638349E-5 40-41 3.6149301241236866E-5 42-43 0.0021932975740817226 44-45 5.811501520590407E-4 46-47 3.272984215512919E-4 48-49 0.001782328774231587 50-51 3.499905768841419E-4 52-53 0.0 54-55 0.004661218599208415 56-57 0.04659665192919375 58-59 0.07093743828648416 60-61 0.033204161662812016 62-63 0.014062349861421715 64-65 0.0015321754813618596 66-67 0.0 68-69 0.0024011979977010198 70-71 0.004009777441312898 72-73 0.013717043627548678 74-75 0.01632807932025428 76-77 0.02159570601884208 78-79 0.006249346448298413 80-81 0.00847394079766717 82-83 0.03404173776052819 84-85 0.019883399568591593 86-87 0.0147915279092606 88-89 0.006551322158033637 90-91 2.8479188548176536E-5 92-93 0.0 94-95 9.738937078772711E-6 96-97 4.9511847838604845E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 802.0 20-21 2680.0 22-23 1750.0 24-25 1842.0 26-27 3155.0 28-29 6838.0 30-31 17664.0 32-33 22870.0 34-35 31566.0 36-37 48164.0 38-39 54978.0 40-41 53042.0 42-43 61271.0 44-45 74094.0 46-47 74352.0 48-49 68949.0 50-51 80808.0 52-53 55107.0 54-55 59209.0 56-57 61028.0 58-59 64954.0 60-61 63521.0 62-63 61631.0 64-65 65958.0 66-67 69845.0 68-69 72557.0 70-71 76218.0 72-73 63479.0 74-75 63394.0 76-77 66024.0 78-79 68456.0 80-81 67992.0 82-83 62777.0 84-85 60706.0 86-87 62614.0 88-89 66496.0 90-91 67520.0 92-93 66273.0 94-95 71337.0 96-97 202653.0 98-99 1548174.0 100-101 3328622.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.2994973441835 #Duplication Level Percentage of deduplicated Percentage of total 1 91.71790617888207 80.98645013056269 2 6.110796489325839 10.791605167601455 3 1.2810749154613532 3.3935481328643955 4 0.4262690486810482 1.5055737092767938 5 0.18301165641930695 0.8079918634975609 6 0.08757609780958733 0.4639755249570967 7 0.05481531278388293 0.33881151959067407 8 0.03365392355232117 0.237729962666363 9 0.023845245839408745 0.18949708995014478 >10 0.07918468550723223 1.062933974381389 >50 0.0012582337971425378 0.0714388695025289 >100 5.171333852118922E-4 0.07848658840838064 >500 6.830895004040391E-5 0.04378973510904092 >1k 2.2769605580063568E-5 0.02816773163150345 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 1.4042241871999348E-5 0.0 0.0 0.0 6 0.0 1.4042241871999348E-5 0.0 0.0 0.0 7 1.4042241871999348E-5 1.4042241871999348E-5 0.0 1.4042241871999348E-5 0.0 8 1.4042241871999348E-5 1.4042241871999348E-5 0.0 1.4042241871999348E-5 0.0 9 1.4042241871999348E-5 4.212672561599804E-5 0.0 2.8084483743998696E-5 0.0 10-11 1.4042241871999348E-5 4.212672561599804E-5 0.0 6.319008842399707E-5 0.0 12-13 1.4042241871999348E-5 4.212672561599804E-5 0.0 7.021120935999674E-5 0.0 14-15 1.4042241871999348E-5 1.1233793497599478E-4 0.0 7.021120935999674E-5 0.0 16-17 2.8084483743998696E-5 1.1233793497599478E-4 0.0 7.021120935999674E-5 0.0 18-19 3.510560467999837E-5 1.2638017684799414E-4 0.0 7.021120935999674E-5 0.0 20-21 4.212672561599804E-5 1.4042241871999348E-4 0.0 7.723233029599641E-5 0.0 22-23 5.616896748799739E-5 1.4744353965599316E-4 0.0 9.127457216799576E-5 7.021120935999674E-6 24-25 5.616896748799739E-5 1.6850690246399217E-4 0.0 1.1233793497599478E-4 1.4042241871999348E-5 26-27 5.616896748799739E-5 1.6850690246399217E-4 0.0 1.9659138620799086E-4 4.9147846551997714E-5 28-29 5.616896748799739E-5 1.7552802339999184E-4 0.0 5.897741586239726E-4 5.616896748799739E-5 30-31 5.616896748799739E-5 2.2467586995198957E-4 0.0 0.001979956103951908 5.616896748799739E-5 32-33 5.616896748799739E-5 2.2467586995198957E-4 0.0 0.005350094153231752 5.616896748799739E-5 34-35 5.616896748799739E-5 2.738237165039873E-4 0.0 0.00949255550547156 8.425345123199608E-5 36-37 7.021120935999674E-5 3.159504421199853E-4 0.0 0.01658388765083123 8.425345123199608E-5 38-39 8.425345123199608E-5 3.5105604679998374E-4 0.0 0.03423498568393441 8.425345123199608E-5 40-41 8.425345123199608E-5 3.791405305439824E-4 0.0 0.05261628029438156 8.425345123199608E-5 42-43 9.829569310399544E-5 4.072250142879811E-4 0.0 0.06395539060602104 8.425345123199608E-5 44-45 9.829569310399544E-5 4.353094980319798E-4 0.0 0.07702871778885242 8.425345123199608E-5 46-47 1.0531681403999511E-4 4.4935173990397914E-4 0.0 0.09114117087021177 8.425345123199608E-5 48-49 1.1233793497599478E-4 4.4935173990397914E-4 0.0 0.10512724377472313 8.425345123199608E-5 50-51 1.5446466059199283E-4 4.914784655199772E-4 0.0 0.11939416151667445 8.425345123199608E-5 52-53 1.6850690246399217E-4 4.914784655199772E-4 0.0 0.1595058254240406 8.425345123199608E-5 54-55 1.6850690246399217E-4 4.914784655199772E-4 0.0 0.21016321297727825 8.425345123199608E-5 56-57 1.7552802339999184E-4 5.055207073919766E-4 0.0 0.279868901629883 9.127457216799576E-5 58-59 1.8254914433599154E-4 5.055207073919766E-4 0.0 0.3254078920207769 9.829569310399544E-5 60-61 1.8254914433599154E-4 5.125418283279762E-4 0.0 0.3427360184908241 9.829569310399544E-5 62-63 2.176547490159899E-4 5.195629492639759E-4 0.0 0.3552897827243915 1.1233793497599478E-4 64-65 2.2467586995198957E-4 5.616896748799739E-4 0.0 0.3619317631298472 1.1233793497599478E-4 66-67 2.3169699088798924E-4 5.897741586239726E-4 0.0 0.3683209831816069 1.1233793497599478E-4 68-69 2.457392327599886E-4 6.03816400495972E-4 0.0 0.37437318942843867 1.1233793497599478E-4 70-71 2.5978147463198795E-4 6.03816400495972E-4 0.0 0.37971626246073437 1.1233793497599478E-4 72-73 2.668025955679876E-4 6.03816400495972E-4 0.0 0.38446956133440613 1.1233793497599478E-4 74-75 2.668025955679876E-4 6.03816400495972E-4 0.0 0.38789586835117396 1.1233793497599478E-4 76-77 2.668025955679876E-4 6.24879763303971E-4 0.0 0.3913572809726218 1.1233793497599478E-4 78-79 2.668025955679876E-4 6.4594312611197E-4 0.0 0.39347063837435775 1.1233793497599478E-4 80-81 2.668025955679876E-4 6.4594312611197E-4 0.0 0.3943201940076137 1.1233793497599478E-4 82-83 2.668025955679876E-4 6.4594312611197E-4 0.0 0.3949450737709177 1.2638017684799414E-4 84-85 2.668025955679876E-4 6.4594312611197E-4 0.0 0.3952118763664857 1.2638017684799414E-4 86-87 2.8084483743998697E-4 6.4594312611197E-4 0.0 0.39529612981771767 1.2638017684799414E-4 88 2.8084483743998697E-4 6.740276098559687E-4 0.0 0.39530315093865365 1.2638017684799414E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12480 0.0 51.567535 1 GTATCAA 23045 0.0 37.28947 1 TGGTATC 5235 0.0 30.693796 2 TCAACGC 27850 0.0 30.313606 4 ATCAACG 28070 0.0 30.003374 3 TATCAAC 28755 0.0 29.52189 2 CAACGCA 28610 0.0 29.508352 5 GTGGTAT 5770 0.0 28.93282 1 AACGCAG 29405 0.0 28.738945 6 ACGCAGA 33340 0.0 25.359327 7 CGCAGAG 33915 0.0 24.941687 8 GCAGAGT 38485 0.0 22.088358 9 AAAGGCG 2610 0.0 21.134182 94 GAGTACT 21130 0.0 20.421373 12-13 TTAGCCG 675 5.456968E-12 19.770687 94 AGGACCG 1595 0.0 19.623095 5 GGACCGA 1345 0.0 19.54723 6 CAGAGTA 37955 0.0 19.488623 10-11 GTACATG 30075 0.0 19.469671 1 TACATGG 30155 0.0 18.933607 2 >>END_MODULE