##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139609_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7316053 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.524606779092498 32.0 25.0 33.0 18.0 33.0 2 31.150137375986752 33.0 31.0 33.0 27.0 33.0 3 30.596637558530535 31.0 30.0 33.0 27.0 33.0 4 31.751890397732218 33.0 31.0 33.0 29.0 33.0 5 32.10057103194851 33.0 32.0 33.0 31.0 33.0 6 35.17460671758392 37.0 35.0 38.0 29.0 38.0 7 36.55829707630603 38.0 37.0 38.0 34.0 38.0 8 36.142000474846206 38.0 36.0 38.0 33.0 38.0 9 36.73629879389884 38.0 38.0 38.0 34.0 38.0 10-11 37.03003853307241 38.0 38.0 38.0 35.5 38.0 12-13 37.16896166553195 38.0 38.0 38.0 36.0 38.0 14-15 37.197357304546586 38.0 38.0 38.0 36.0 38.0 16-17 37.270122223007405 38.0 38.0 38.0 36.5 38.0 18-19 37.317364226311646 38.0 38.0 38.0 37.0 38.0 20-21 37.35830076197561 38.0 38.0 38.0 37.0 38.0 22-23 37.38042319082723 38.0 38.0 38.0 37.0 38.0 24-25 37.40369308996664 38.0 38.0 38.0 37.0 38.0 26-27 37.38135210190637 38.0 38.0 38.0 37.0 38.0 28-29 37.366133628126136 38.0 38.0 38.0 37.0 38.0 30-31 37.37015772350252 38.0 38.0 38.0 37.0 38.0 32-33 37.359124754625576 38.0 38.0 38.0 37.0 38.0 34-35 37.338522194477775 38.0 38.0 38.0 37.0 38.0 36-37 37.320618824467786 38.0 38.0 38.0 37.0 38.0 38-39 37.31071001175583 38.0 38.0 38.0 37.0 38.0 40-41 37.30187318822864 38.0 38.0 38.0 37.0 38.0 42-43 37.2586198202212 38.0 38.0 38.0 37.0 38.0 44-45 37.21546616778258 38.0 38.0 38.0 37.0 38.0 46-47 37.18144247821105 38.0 38.0 38.0 37.0 38.0 48-49 37.124644939638195 38.0 38.0 38.0 36.5 38.0 50-51 37.088768223697045 38.0 38.0 38.0 36.0 38.0 52-53 37.07894008212352 38.0 38.0 38.0 36.0 38.0 54-55 37.0563781473315 38.0 38.0 38.0 36.0 38.0 56-57 37.00149565154259 38.0 38.0 38.0 36.0 38.0 58-59 36.97906641880559 38.0 38.0 38.0 36.0 38.0 60-61 37.006904318813554 38.0 38.0 38.0 36.0 38.0 62-63 37.01316126554906 38.0 38.0 38.0 36.0 38.0 64-65 37.01981128675965 38.0 38.0 38.0 36.0 38.0 66-67 37.01701296397407 38.0 38.0 38.0 36.0 38.0 68-69 37.007553553450784 38.0 38.0 38.0 36.0 38.0 70-71 37.000669721703815 38.0 38.0 38.0 36.0 38.0 72-73 36.994263046960015 38.0 38.0 38.0 36.0 38.0 74-75 36.969800659802345 38.0 38.0 38.0 36.0 38.0 76-77 36.94516793662709 38.0 38.0 38.0 36.0 38.0 78-79 36.946121303567054 38.0 38.0 38.0 36.0 38.0 80-81 36.938016522355866 38.0 38.0 38.0 35.5 38.0 82-83 36.886671642317566 38.0 38.0 38.0 35.0 38.0 84-85 36.867011661192294 38.0 38.0 38.0 35.0 38.0 86-87 36.86609535467949 38.0 38.0 38.0 35.0 38.0 88-89 36.84713446018851 38.0 38.0 38.0 35.0 38.0 90-91 36.81813411733066 38.0 38.0 38.0 35.0 38.0 92-93 36.807220177521884 38.0 38.0 38.0 35.0 38.0 94-95 36.778260669784615 38.0 38.0 38.0 35.0 38.0 96-97 36.74472097948155 38.0 38.0 38.0 34.5 38.0 98-99 36.7228939780512 38.0 38.0 38.0 34.5 38.0 100 35.29079930344625 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 21.0 21 97.0 22 403.0 23 1353.0 24 3241.0 25 6676.0 26 12105.0 27 20311.0 28 32604.0 29 47705.0 30 64490.0 31 84336.0 32 111372.0 33 151834.0 34 230251.0 35 423380.0 36 1230400.0 37 4895471.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.518220275331515 19.427141930218383 14.361145278745246 24.693492515704847 2 14.638702266817413 20.52588534590594 42.47892889524791 22.356483492028733 3 18.147595559434563 25.799089223434144 30.422903508670014 25.63041170846128 4 12.519838224244683 17.541029295441135 39.43599096398017 30.503141516334015 5 13.363577340231409 37.166435439889014 35.613425277301275 13.856561942578304 6 29.977761162816446 37.82610240799997 18.553887832608666 13.642248596574918 7 26.6898558553362 32.80442336872081 23.052047326611767 17.453673449331216 8 24.492263793058907 36.44895683505847 21.03739543712983 18.021383934752798 9 25.90403596037372 16.776436693391915 21.547356204226514 35.772171142007856 10-11 24.1520120206893 26.717814920148886 28.867512304790576 20.262660754371243 12-13 25.071018484967233 24.57435040451457 29.03214342487677 21.322487685641427 14-15 22.362953084128833 25.75290938980349 26.91344636240333 24.97069116366434 16-17 21.455031832054797 28.92139381713063 27.672052129748103 21.95152222106647 18-19 21.463834392670474 27.85145214229585 29.80193691871833 20.882776546315345 20-21 22.30177766128925 26.987783170498087 29.773162887984544 20.93727628022812 22-23 22.12135966988499 26.764555476712427 29.63954944500801 21.474535408394573 24-25 21.821614212723304 27.02321376475468 29.747615723633107 21.40755629888891 26-27 21.64119137173904 27.115673667741046 29.77768258335365 21.465452377166265 28-29 21.58180166199833 26.999563315940062 29.900492799842425 21.518142222219183 30-31 21.8614500946583 26.96810369525059 29.74091590078044 21.429530309310675 32-33 21.587671870153326 27.211372078860762 29.656567685317537 21.544388365668375 34-35 21.818518592139043 27.17475268795609 29.659926896040663 21.346801823864205 36-37 21.818751570530573 26.982348807322076 29.58584396679062 21.613055655356728 38-39 21.576018073464773 27.273868133989765 29.666247887875624 21.483865904669834 40-41 21.787331456832074 27.057318882600878 29.67384369107467 21.481505969492375 42-43 21.76039928177116 27.152630662603034 29.33475197011718 21.752218085508627 44-45 21.740752046943985 27.276848119570708 29.285771912016607 21.696627921468696 46-47 21.924244468863975 27.33505332188709 28.969684021149877 21.77101818809905 48-49 21.848833978234723 27.49453499509536 28.802814419756285 21.853816606913636 50-51 21.80777190650956 27.60006067648749 28.65115046829475 21.941016948708196 52-53 21.9767481874441 27.53070869169098 28.568704330242685 21.923838790622234 54-55 22.00099221997245 27.489475032555372 28.61850221202079 21.89103053545139 56-57 21.940710582909663 27.57255388080561 28.549624384799046 21.937111151485684 58-59 21.799717308221577 27.446164154013385 28.604565840532466 22.149552697232576 60-61 22.044791615167846 27.544982766214154 28.687586730305686 21.72263888831231 62-63 21.790812654594973 27.519415827511995 28.783531500507014 21.906240017386015 64-65 21.757272288264765 27.346400258165136 28.778400428802108 22.117927024767987 66-67 21.801129616193222 27.48210992048191 28.72619258746173 21.990567875863135 68-69 21.75110554723318 27.665820363324357 28.694997120380595 21.88807696906187 70-71 21.815166632921514 27.392711331568908 28.62185016111665 22.17027187439292 72-73 21.899694931231874 27.532661444404273 28.392481082860698 22.175162541503155 74-75 21.748846226569203 27.68368889792128 28.58493772581867 21.98252714969085 76-77 21.92220483116443 27.363141195152018 28.54790565453957 22.166748319143984 78-79 21.892649497661562 27.350976099570488 28.224532613740994 22.531841789026956 80-81 22.094588455848417 27.77622490442789 28.08349505991648 22.045691579807215 82-83 22.25455485918605 27.426680326222332 28.181203380070443 22.13756143452118 84-85 21.99562408583343 27.429607219911873 28.110258027488527 22.464510666766166 86-87 21.914245679844097 27.792045679741683 28.186871887762916 22.106836752651308 88-89 22.245586968766027 27.71334292871651 28.11336038113883 21.92770972137863 90-91 22.26796575191714 27.74533163937963 28.10673651683312 21.879966091870113 92-93 22.138793685160255 27.507012018626803 28.05370580128159 22.30048849493135 94-95 22.188109693484623 27.678185594975268 28.116995544602464 22.01670916693764 96-97 22.59354231928934 27.581967959084817 28.09904932045742 21.72544040116842 98-99 23.1819974373821 29.638989116486158 28.46734528403167 18.71166816210007 100 29.578377087263014 40.443520842012845 29.978102070724145 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2249.0 1 1963.5 2 2285.0 3 3134.5 4 3853.0 5 5207.5 6 6697.5 7 9197.0 8 12445.5 9 13984.5 10 13124.0 11 12061.5 12 12939.0 13 16013.0 14 22280.5 15 29442.5 16 34555.0 17 37093.0 18 36194.0 19 32583.5 20 28263.5 21 24883.0 22 23942.5 23 26202.0 24 31413.0 25 39714.5 26 51299.5 27 64839.5 28 78066.5 29 93990.0 30 112116.0 31 129759.5 32 153385.0 33 180550.5 34 201049.5 35 221993.0 36 248218.5 37 265217.5 38 278184.5 39 287969.0 40 293757.5 41 296258.0 42 294498.0 43 299261.0 44 304076.5 45 303866.5 46 299088.0 47 293810.0 48 291635.5 49 288045.0 50 281649.5 51 273135.0 52 262090.0 53 248949.0 54 233384.5 55 216772.5 56 198455.5 57 178366.0 58 158756.5 59 137511.0 60 115338.0 61 93928.0 62 74177.5 63 57526.5 64 43955.5 65 33021.5 66 24007.5 67 17989.0 68 13669.0 69 10163.5 70 7524.0 71 5251.5 72 3645.0 73 2526.5 74 1675.0 75 1096.5 76 729.5 77 449.5 78 291.5 79 182.0 80 109.0 81 73.0 82 55.5 83 41.5 84 31.5 85 26.0 86 23.5 87 19.5 88 12.0 89 7.5 90 3.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006369554731219142 3 0.004346606018299759 4 0.0 5 4.10057171537713E-5 6 3.1437716484557996E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.212655291725164E-4 26-27 0.0019210187825731467 28-29 0.00677720555640584 30-31 0.0025328283649394944 32-33 0.005473588904664897 34-35 0.002668609157359835 36-37 0.0012429436191797524 38-39 3.4724597481147147E-5 40-41 1.5376169244097035E-4 42-43 0.002194735350440498 44-45 4.6080574223505104E-4 46-47 2.933578838106731E-4 48-49 0.0018485932782837662 50-51 5.024791886228226E-4 52-53 0.0 54-55 0.004767218212872627 56-57 0.04702386179796514 58-59 0.07067172242833974 60-61 0.03228711705547529 62-63 0.01351251208403565 64-65 0.001680254864740634 66-67 0.0 68-69 0.002211436282542789 70-71 0.0038188688415808536 72-73 0.012966748176112972 74-75 0.015697922143289637 76-77 0.0206523497058724 78-79 0.006163432763218535 80-81 0.008148815254184653 82-83 0.032439288035860096 84-85 0.018428888656051537 86-87 0.012996458529051779 88-89 0.005733792186160453 90-91 4.358369551384305E-5 92-93 0.0 94-95 0.0 96-97 3.622221495765578E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 68.0 20-21 312.0 22-23 722.0 24-25 808.0 26-27 1890.0 28-29 4903.0 30-31 13751.0 32-33 18278.0 34-35 25407.0 36-37 39229.0 38-39 45584.0 40-41 45109.0 42-43 51746.0 44-45 63538.0 46-47 65223.0 48-49 59782.0 50-51 53437.0 52-53 48494.0 54-55 52178.0 56-57 54032.0 58-59 31072.0 60-61 55542.0 62-63 53911.0 64-65 57075.0 66-67 59870.0 68-69 61736.0 70-71 60346.0 72-73 57063.0 74-75 58573.0 76-77 60284.0 78-79 62541.0 80-81 62639.0 82-83 59247.0 84-85 57629.0 86-87 59703.0 88-89 62242.0 90-91 62924.0 92-93 62907.0 94-95 72975.0 96-97 242480.0 98-99 1693566.0 100-101 3617237.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.44438114280454 #Duplication Level Percentage of deduplicated Percentage of total 1 90.67604428820711 78.384345329716 2 6.671543320664979 11.534348672445907 3 1.5146963132794988 3.928109562622016 4 0.5303842188451843 1.8339494226392707 5 0.24020630280434432 1.038224259626133 6 0.11841897187386256 0.6141992843521937 7 0.07148635729295627 0.43257157414401115 8 0.04204581595488936 0.29076996318917353 9 0.028191999275163145 0.2193335937467885 >10 0.1039137575930486 1.3624889979988157 >50 0.002196467441953949 0.12664228939898198 >100 7.474524298616369E-4 0.14204968343933835 >500 9.978751209452993E-5 0.0658815652304041 >1k 2.4946825066838026E-5 0.027085801451020554 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.834286192295218E-5 0.0 0.0 0.0 3 0.0 8.20114343075426E-5 0.0 0.0 0.0 4 0.0 1.3668572384590435E-4 0.0 1.3668572384590434E-5 0.0 5 0.0 1.3668572384590435E-4 0.0 1.3668572384590434E-5 0.0 6 1.3668572384590434E-5 1.3668572384590435E-4 0.0 1.3668572384590434E-5 0.0 7 1.3668572384590434E-5 1.3668572384590435E-4 0.0 1.3668572384590434E-5 0.0 8 1.3668572384590434E-5 1.640228686150852E-4 0.0 1.3668572384590434E-5 0.0 9 1.3668572384590434E-5 2.870400200763991E-4 0.0 2.7337144769180868E-5 0.0 10-11 1.3668572384590434E-5 2.870400200763991E-4 0.0 2.7337144769180868E-5 0.0 12-13 4.10057171537713E-5 2.870400200763991E-4 0.0 2.7337144769180868E-5 0.0 14-15 4.10057171537713E-5 3.0070859246098956E-4 0.0 2.7337144769180868E-5 1.3668572384590434E-5 16-17 4.784000334606652E-5 3.0070859246098956E-4 0.0 2.7337144769180868E-5 2.7337144769180868E-5 18-19 6.150857573065696E-5 3.1437716484558E-4 0.0 2.7337144769180868E-5 2.7337144769180868E-5 20-21 6.834286192295218E-5 3.417143096147608E-4 0.0 4.10057171537713E-5 3.417143096147608E-5 22-23 8.20114343075426E-5 3.622171681916465E-4 0.0 4.10057171537713E-5 4.10057171537713E-5 24-25 9.568000669213305E-5 4.1689145773000826E-4 0.0 6.834286192295218E-5 4.10057171537713E-5 26-27 1.1618286526901869E-4 4.373943163068939E-4 0.0 8.884572049983782E-5 4.10057171537713E-5 28-29 1.230171514613139E-4 4.373943163068939E-4 0.0 4.3056003011459867E-4 4.10057171537713E-5 30-31 1.3668572384590435E-4 4.784000334606652E-4 0.0 0.0016197258275739664 4.10057171537713E-5 32-33 1.3668572384590435E-4 4.784000334606652E-4 0.0 0.0038613716986467977 4.10057171537713E-5 34-35 1.5035429623049478E-4 5.67245753960503E-4 0.0 0.007039314778064074 4.10057171537713E-5 36-37 1.640228686150852E-4 6.629257606526361E-4 0.0 0.012677600886707628 4.10057171537713E-5 38-39 1.640228686150852E-4 6.697600468449313E-4 0.0 0.02750800192398825 4.10057171537713E-5 40-41 1.640228686150852E-4 7.24434336383293E-4 0.0 0.04293982014619085 4.10057171537713E-5 42-43 1.708571548073804E-4 7.449371949601786E-4 0.0 0.052002083637174304 4.10057171537713E-5 44-45 1.9819429957656132E-4 8.747886326137878E-4 0.0 0.06336750157496125 4.10057171537713E-5 46-47 2.1186287196115172E-4 9.841372116905112E-4 0.0 0.07498578810186313 5.4674289538361737E-5 48-49 2.3236573053803737E-4 9.909714978828064E-4 0.0 0.08612567459530432 5.4674289538361737E-5 50-51 2.3236573053803737E-4 0.001161828652690187 0.0 0.09852306974812786 5.4674289538361737E-5 52-53 2.460343029226278E-4 0.001161828652690187 0.0 0.1347516208534848 6.150857573065696E-5 54-55 2.460343029226278E-4 0.0011754972250747773 0.0 0.1806438526347472 6.834286192295218E-5 56-57 2.460343029226278E-4 0.0012165029422285486 0.0 0.23412897637564953 6.834286192295218E-5 58-59 2.460343029226278E-4 0.0012165029422285486 0.0 0.44113267085407937 6.834286192295218E-5 60-61 2.460343029226278E-4 0.001223337228420844 0.0 0.6278248667690078 6.834286192295218E-5 62-63 2.460343029226278E-4 0.0012780115179592056 0.0 0.6344131186583803 6.834286192295218E-5 64-65 2.460343029226278E-4 0.0013805258108436338 0.0 0.640700661955292 6.834286192295218E-5 66-67 2.733714476918087E-4 0.0014078629556128147 0.0 0.6468105138112039 6.834286192295218E-5 68-69 2.733714476918087E-4 0.0014625372451511766 0.0 0.6525239770679627 6.834286192295218E-5 70-71 2.733714476918087E-4 0.001510377248497243 0.0 0.6576565259983764 6.834286192295218E-5 72-73 2.733714476918087E-4 0.001537714393266424 0.0 0.6614495548351003 1.0934857907672347E-4 74-75 2.733714476918087E-4 0.0015718858242278998 0.0 0.6645523207664024 1.0934857907672347E-4 76-77 2.733714476918087E-4 0.0016470629723431473 0.0 0.667832778138704 1.0934857907672347E-4 78-79 2.733714476918087E-4 0.0016949029756892138 0.0 0.6699650754307002 1.0934857907672347E-4 80-81 2.870400200763991E-4 0.0016949029756892138 0.0 0.6708261954909294 1.0934857907672347E-4 82-83 2.870400200763991E-4 0.0017085715480738043 0.0 0.6715232926825434 1.0934857907672347E-4 84-85 2.870400200763991E-4 0.0017222401204583947 0.0 0.6718308355611967 1.0934857907672347E-4 86-87 2.870400200763991E-4 0.0017359086928429852 0.0 0.6719470184264658 1.0934857907672347E-4 88 2.870400200763991E-4 0.001831588699535118 0.0 0.6719470184264658 1.0934857907672347E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10700 0.0 53.742844 1 GTATCAA 21315 0.0 40.33787 1 TCAACGC 25775 0.0 32.693756 4 ATCAACG 26280 0.0 31.887968 3 CAACGCA 26545 0.0 31.761454 5 TATCAAC 26970 0.0 31.310932 2 AACGCAG 27370 0.0 30.850807 6 CGAGACC 5435 0.0 27.914818 86-87 ACGCAGA 31345 0.0 26.992687 7 GAGACCG 5615 0.0 26.810574 88-89 CGCAGAG 32130 0.0 26.30667 8 AGACCGA 5790 0.0 26.240536 88-89 ACCGAGG 5930 0.0 26.117363 90-91 GACCGAG 5990 0.0 25.289568 90-91 TGGTATC 4870 0.0 25.209023 2 ATCTCCG 5790 0.0 24.358301 74-75 GCCCACG 6060 0.0 24.098429 82-83 GTGGTAT 5370 0.0 23.97315 1 CACGAGA 6245 0.0 23.941622 84-85 CCCACGA 6285 0.0 23.450068 82-83 >>END_MODULE