##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139605_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7344400 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.07731223789554 25.0 18.0 33.0 18.0 33.0 2 27.649798485921245 28.0 25.0 31.0 18.0 33.0 3 26.136815805239365 28.0 18.0 31.0 18.0 33.0 4 30.624084608681443 31.0 29.0 33.0 27.0 33.0 5 32.34800623604379 33.0 33.0 33.0 32.0 33.0 6 36.68421722673057 38.0 37.0 38.0 34.0 38.0 7 36.932357578563256 38.0 38.0 38.0 35.0 38.0 8 37.13025284570557 38.0 38.0 38.0 36.0 38.0 9 37.31344439300692 38.0 38.0 38.0 36.0 38.0 10-11 37.32432370241272 38.0 38.0 38.0 36.5 38.0 12-13 37.435529042535805 38.0 38.0 38.0 37.0 38.0 14-15 37.42453093513426 38.0 38.0 38.0 37.0 38.0 16-17 37.456578481564186 38.0 38.0 38.0 37.0 38.0 18-19 37.452357170088774 38.0 38.0 38.0 37.0 38.0 20-21 37.46213466201142 38.0 38.0 38.0 37.0 38.0 22-23 37.46988387530784 38.0 38.0 38.0 37.0 38.0 24-25 37.47674767780093 38.0 38.0 38.0 37.0 38.0 26-27 37.43833811797381 38.0 38.0 38.0 37.0 38.0 28-29 37.41309602999581 38.0 38.0 38.0 37.0 38.0 30-31 37.42315240145436 38.0 38.0 38.0 37.0 38.0 32-33 37.410072889964255 38.0 38.0 38.0 37.0 38.0 34-35 37.384603215876766 38.0 38.0 38.0 37.0 38.0 36-37 37.362386045293036 38.0 38.0 38.0 37.0 38.0 38-39 37.35387787993491 38.0 38.0 38.0 37.0 38.0 40-41 37.34827173801456 38.0 38.0 38.0 37.0 38.0 42-43 37.3091964860296 38.0 38.0 38.0 37.0 38.0 44-45 37.2711257489963 38.0 38.0 38.0 37.0 38.0 46-47 37.24111783264615 38.0 38.0 38.0 37.0 38.0 48-49 37.18860519474373 38.0 38.0 38.0 37.0 38.0 50-51 37.14687481492716 38.0 38.0 38.0 37.0 38.0 52-53 37.134400448677184 38.0 38.0 38.0 36.0 38.0 54-55 37.11044047943855 38.0 38.0 38.0 36.0 38.0 56-57 37.05492633687582 38.0 38.0 38.0 36.0 38.0 58-59 37.02946439806749 38.0 38.0 38.0 36.0 38.0 60-61 37.05692448097524 38.0 38.0 38.0 36.0 38.0 62-63 37.064893864228345 38.0 38.0 38.0 36.0 38.0 64-65 37.07365234913081 38.0 38.0 38.0 36.0 38.0 66-67 37.06996572098944 38.0 38.0 38.0 36.0 38.0 68-69 37.059401177097584 38.0 38.0 38.0 36.0 38.0 70-71 37.051964757419526 38.0 38.0 38.0 36.0 38.0 72-73 37.04662675517309 38.0 38.0 38.0 36.0 38.0 74-75 37.027583730574975 38.0 38.0 38.0 36.0 38.0 76-77 37.00568937767638 38.0 38.0 38.0 36.0 38.0 78-79 37.00868707917492 38.0 38.0 38.0 36.0 38.0 80-81 37.00244667887672 38.0 38.0 38.0 36.0 38.0 82-83 36.95343549566961 38.0 38.0 38.0 36.0 38.0 84-85 36.93944962622781 38.0 38.0 38.0 36.0 38.0 86-87 36.9391621732934 38.0 38.0 38.0 36.0 38.0 88-89 36.92089732922243 38.0 38.0 38.0 35.0 38.0 90-91 36.89911550659111 38.0 38.0 38.0 35.0 38.0 92-93 36.886749389636634 38.0 38.0 38.0 35.0 38.0 94-95 36.85988382456281 38.0 38.0 38.0 35.0 38.0 96-97 36.82775931967042 38.0 38.0 38.0 35.0 38.0 98-99 36.80160582431215 38.0 38.0 38.0 35.0 38.0 100 35.40387238466686 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 5.0 20 19.0 21 104.0 22 392.0 23 1263.0 24 2906.0 25 6010.0 26 11189.0 27 19125.0 28 30604.0 29 44484.0 30 59894.0 31 77141.0 32 99992.0 33 136158.0 34 210123.0 35 417239.0 36 1497446.0 37 4730303.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 51.52588366646697 15.741585425630412 10.91353956756168 21.81899134034094 2 14.960220356986706 20.00379080683048 41.704798270934575 23.331190565248242 3 19.55406873372361 25.237622044855375 30.145749872076376 25.062559349344642 4 13.001810903545557 17.68458961930178 39.345256249659606 29.968343227493055 5 13.662218833396874 37.70414193126736 34.97692119165623 13.65671804367954 6 30.047462050647066 37.69059775387868 18.663963289551187 13.597976905923076 7 26.716722945373345 33.11892053809705 22.77004248134633 17.39431403518327 8 24.036844398453244 37.12099014214912 20.992170905724088 17.849994553673547 9 25.58552094112521 17.64587985403845 21.62651816349872 35.14208104133762 10-11 24.096522520559883 27.155635586297045 28.705380970535373 20.042460922607702 12-13 24.970725995316158 24.83784243777572 28.917304340722183 21.27412722618594 14-15 22.2565492075595 26.30990278307282 26.746133108218505 24.687414901149175 16-17 21.558833941506453 29.3981128478841 27.559718969555036 21.483334241054408 18-19 21.48148929796852 28.35821169870922 29.477261587059527 20.68303741626273 20-21 22.32125265800682 27.498853195238386 29.49259829263952 20.68729585411527 22-23 22.114590993349477 27.2905395712817 29.349987639580654 21.24488179578817 24-25 21.76285592524512 27.502427855928307 29.480200182108767 21.254516036717803 26-27 21.709196987162866 27.606937086922507 29.428992891744006 21.254873034170622 28-29 21.638951592548047 27.59597747368916 29.52899872503506 21.236072208727734 30-31 21.916352150609306 27.489977411031603 29.42304677567314 21.17062366268595 32-33 21.661340888156328 27.726237287774268 29.320062514096794 21.292359309972607 34-35 21.84468357511737 27.719226823664084 29.2839437592026 21.152145842015948 36-37 21.86598151117566 27.551342118646932 29.261848330717726 21.320828039459684 38-39 21.59945395873002 27.806681187176196 29.363217077004826 21.230647777088958 40-41 21.89132002255975 27.649625774586532 29.270819077442017 21.1882351254117 42-43 21.819534994492574 27.738032070915352 29.054547173875356 21.387885760716717 44-45 21.83378926982406 27.85667502314972 28.94055463333107 21.368981073695146 46-47 21.975362531950417 27.856375075703653 28.654844375356266 21.513418016989664 48-49 21.82435250339729 27.97367087225294 28.644040581398983 21.55793604295079 50-51 21.810811405980573 28.11717031171993 28.498754203964005 21.57326407833549 52-53 21.99860648472748 28.048971357635427 28.420509760407747 21.531912397229345 54-55 22.052582430848712 28.00209033188429 28.427227381289693 21.51809985597731 56-57 21.953895075548637 28.11691949360393 28.36085693188949 21.568328498957943 58-59 21.840883472428427 28.012302705050367 28.390622452250152 21.75619137027105 60-61 22.110527480175733 28.00313061015508 28.53976801583989 21.3465738938293 62-63 21.817752579272582 28.03989821090731 28.57740361795124 21.564945591868867 64-65 21.80555759150472 28.00419059415919 28.51708945186955 21.673162362466545 66-67 21.900445941754377 28.128429869299204 28.48668099362991 21.484443195316512 68-69 21.827040734964083 28.30777009813264 28.413876258746562 21.451312908156716 70-71 21.812183893776524 28.125846125560123 28.304920276605962 21.757049704057398 72-73 21.964446393588048 28.18524857583908 28.139361899111826 21.710943131461043 74-75 21.669666838757145 28.26578521746783 28.43344731024342 21.631100633531602 76-77 21.89107758855266 27.827462141566027 28.40226164463883 21.879198625242484 78-79 21.89515342796104 27.92447787180209 28.06071523882505 22.119653461411815 80-81 22.104910295925603 28.15464488679758 28.011995221066936 21.72844959620988 82-83 22.1549293764528 27.841319046236375 28.13634575671568 21.86740582059515 84-85 22.000004888919946 27.770506680076917 28.116439912097217 22.113048518905916 86-87 21.848303483283875 28.102897422285643 28.146592258300167 21.90220683613032 88-89 22.18861113341428 28.081277275303908 28.105691713884124 21.624419877397692 90-91 22.231584451173024 28.109006514533252 28.05624171932993 21.60316731496379 92-93 22.027831542655584 27.88431638785454 28.02160202427222 22.066250045217654 94-95 22.1468130725286 28.141712848859573 28.076384041143704 21.635090037468125 96-97 22.494409485225745 28.002166819205843 28.132861696739216 21.370561998829203 98-99 23.124014191228124 30.038305712278596 28.489455006374463 18.348225090118813 100 29.287011571934197 40.910119879124835 29.80286854894097 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1162.0 1 1158.5 2 1539.5 3 2091.0 4 2613.5 5 3640.5 6 4608.5 7 5618.0 8 7735.5 9 9427.0 10 9506.0 11 9552.5 12 10516.0 13 12837.0 14 17037.5 15 21745.0 16 26172.0 17 30099.5 18 31579.0 19 30076.0 20 27232.0 21 24888.0 22 24914.0 23 28364.0 24 35071.0 25 45078.0 26 59468.5 27 76147.0 28 91342.5 29 107906.5 30 125182.0 31 141662.0 32 161684.5 33 184141.5 34 204418.0 35 222429.0 36 244039.5 37 262240.5 38 273769.5 39 283071.5 40 292943.0 41 300724.0 42 302685.5 43 306727.5 44 311734.5 45 312703.5 46 309436.5 47 306049.5 48 303250.5 49 296817.5 50 287864.5 51 277038.0 52 262744.5 53 246462.0 54 228967.0 55 210355.0 56 190590.5 57 171058.5 58 151966.5 59 131044.5 60 109725.0 61 88698.0 62 69198.0 63 53356.0 64 40488.0 65 30269.0 66 22198.0 67 16724.0 68 12779.0 69 9304.0 70 6822.5 71 4966.5 72 3505.5 73 2403.0 74 1594.0 75 1058.5 76 699.5 77 456.5 78 306.0 79 201.5 80 139.0 81 93.0 82 61.0 83 41.0 84 24.0 85 16.0 86 13.0 87 9.5 88 6.0 89 2.5 90 2.0 91 3.0 92 2.0 93 1.0 94 0.5 95 0.0 96 0.5 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004316213713850009 3 0.002369152006971298 4 0.0 5 0.0 6 8.169489679211372E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.0426426157754514E-4 26-27 0.001790923748254956 28-29 0.007207137000249252 30-31 0.002407013587557608 32-33 0.005124291746016325 34-35 0.0025760279362008315 36-37 0.0011281851538951179 38-39 2.0756759629043494E-5 40-41 4.872815003647998E-5 42-43 0.0023465118575898454 44-45 6.069705914279097E-4 46-47 3.9876664325574164E-4 48-49 0.0017457613919192655 50-51 4.4187244098811663E-4 52-53 0.0 54-55 0.005019778515318556 56-57 0.049110240822426515 58-59 0.07429381724511397 60-61 0.03480247941391303 62-63 0.014959174550325775 64-65 0.0015574768508551007 66-67 0.0 68-69 0.0021547487667952746 70-71 0.004062023404640308 72-73 0.01403218200430167 74-75 0.01690188929654833 76-77 0.0220872428305594 78-79 0.006616198954493539 80-81 0.008561384424571356 82-83 0.03553345993779684 84-85 0.020621931149886297 86-87 0.014948687099206416 88-89 0.007236889999444111 90-91 9.57301981867482E-5 92-93 0.0 94-95 0.0 96-97 5.427900876036062E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 49.0 20-21 210.0 22-23 601.0 24-25 677.0 26-27 1910.0 28-29 4870.0 30-31 13982.0 32-33 18314.0 34-35 26090.0 36-37 40278.0 38-39 43875.0 40-41 43629.0 42-43 50621.0 44-45 61427.0 46-47 63088.0 48-49 58874.0 50-51 51647.0 52-53 48208.0 54-55 53328.0 56-57 56446.0 58-59 31465.0 60-61 56554.0 62-63 54926.0 64-65 58273.0 66-67 61557.0 68-69 63984.0 70-71 61371.0 72-73 58652.0 74-75 59452.0 76-77 62584.0 78-79 64890.0 80-81 64179.0 82-83 60622.0 84-85 59212.0 86-87 62065.0 88-89 64884.0 90-91 64898.0 92-93 64226.0 94-95 73157.0 96-97 246709.0 98-99 1668195.0 100-101 3644421.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.55102729423614 #Duplication Level Percentage of deduplicated Percentage of total 1 92.60951362369102 82.93277082221088 2 5.471327572585612 9.799260095766419 3 1.1336134322346663 3.0454874223347788 4 0.36910995323285023 1.3221670198611677 5 0.16263959910412212 0.7282271589248431 6 0.08925955933798327 0.4795971140728337 7 0.04750776025086674 0.29780581144393753 8 0.03068820978335585 0.21985285695364354 9 0.021678955870209994 0.17472354919593444 >10 0.06338917359398744 0.8370937443932055 >50 9.239295629907652E-4 0.05390981494917429 >100 3.0654606460953706E-4 0.06759466883788093 >500 2.0842344747634362E-5 0.016032834563159327 >1k 2.084234295524826E-5 0.025477086492056298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3615816132018953E-5 0.0 0.0 0.0 3 0.0 1.3615816132018953E-5 0.0 1.3615816132018953E-5 0.0 4 0.0 1.3615816132018953E-5 0.0 2.7231632264037906E-5 0.0 5 0.0 1.3615816132018953E-5 0.0 2.7231632264037906E-5 0.0 6 5.446326452807581E-5 1.3615816132018953E-5 0.0 2.7231632264037906E-5 0.0 7 5.446326452807581E-5 1.3615816132018953E-5 0.0 2.7231632264037906E-5 0.0 8 5.446326452807581E-5 4.084744839605686E-5 0.0 4.084744839605686E-5 1.3615816132018953E-5 9 6.807908066009477E-5 9.531071292413267E-5 0.0 5.446326452807581E-5 4.084744839605686E-5 10-11 8.169489679211372E-5 9.531071292413267E-5 0.0 6.12711725940853E-5 4.084744839605686E-5 12-13 8.169489679211372E-5 9.531071292413267E-5 0.0 6.807908066009477E-5 4.084744839605686E-5 14-15 8.169489679211372E-5 1.770056097162464E-4 0.0 6.807908066009477E-5 4.7655356462066336E-5 16-17 8.169489679211372E-5 1.9062142584826535E-4 0.0 6.807908066009477E-5 5.446326452807581E-5 18-19 8.169489679211372E-5 2.042372419802843E-4 0.0 1.0892652905615162E-4 6.807908066009477E-5 20-21 8.169489679211372E-5 2.1785305811230325E-4 0.0 1.0892652905615162E-4 6.807908066009477E-5 22-23 8.169489679211372E-5 2.1785305811230325E-4 0.0 1.225423451881706E-4 6.807908066009477E-5 24-25 8.169489679211372E-5 2.314688742443222E-4 0.0 2.2466096617831274E-4 7.488698872610425E-5 26-27 8.169489679211372E-5 2.314688742443222E-4 0.0 3.1316377103643596E-4 8.85028048581232E-5 28-29 8.169489679211372E-5 2.382767823103317E-4 0.0 5.310168291487392E-4 9.531071292413267E-5 30-31 9.531071292413267E-5 2.927400468384075E-4 0.0 0.0015930504874462174 9.531071292413267E-5 32-33 9.531071292413267E-5 2.99547954904417E-4 0.0 0.003914547137955449 9.531071292413267E-5 34-35 9.531071292413267E-5 3.472033113664833E-4 0.0 0.006787484341811448 9.531071292413267E-5 36-37 9.531071292413267E-5 3.9485866782854967E-4 0.0 0.012131692173628889 9.531071292413267E-5 38-39 9.531071292413267E-5 4.2209030009258757E-4 0.0 0.02614236697347639 9.531071292413267E-5 40-41 1.0211862099014215E-4 4.493219323566255E-4 0.0 0.04106530145416916 9.531071292413267E-5 42-43 1.0892652905615162E-4 4.697456565546539E-4 0.0 0.04930287021404063 9.531071292413267E-5 44-45 1.157344371221611E-4 5.310168291487392E-4 0.0 0.05956919557758292 9.531071292413267E-5 46-47 1.225423451881706E-4 5.71864277544796E-4 0.0 0.07031207450574586 1.0892652905615162E-4 48-49 1.225423451881706E-4 5.71864277544796E-4 0.0 0.08123195904362507 1.225423451881706E-4 50-51 1.225423451881706E-4 6.944066227329666E-4 0.0 0.09257393388159686 1.3615816132018954E-4 52-53 1.225423451881706E-4 7.080224388649856E-4 0.0 0.12706960405206688 1.5658188551821798E-4 54-55 1.225423451881706E-4 7.148303469309951E-4 0.0 0.1706878710309896 1.6338979358422744E-4 56-57 1.225423451881706E-4 7.352540711290234E-4 0.0 0.2240754860846359 1.6338979358422744E-4 58-59 1.225423451881706E-4 7.624857033930614E-4 0.0 0.4397500136158161 1.701977016502369E-4 60-61 1.225423451881706E-4 8.169489679211372E-4 0.0 0.6334349980937857 1.770056097162464E-4 62-63 1.225423451881706E-4 8.305647840531562E-4 0.0 0.6400046293774849 2.1104515004629379E-4 64-65 1.225423451881706E-4 9.394913131093078E-4 0.0 0.6462066336256196 2.1785305811230325E-4 66-67 1.225423451881706E-4 9.394913131093078E-4 0.0 0.6522452480801699 2.1785305811230325E-4 68-69 1.225423451881706E-4 9.667229453733456E-4 0.0 0.6584812918686346 2.1785305811230325E-4 70-71 1.225423451881706E-4 9.803387615053647E-4 0.0 0.6636553019988018 2.1785305811230325E-4 72-73 1.3615816132018954E-4 0.001000762485703393 0.0 0.6678149338271335 2.450846903763412E-4 74-75 1.3615816132018954E-4 0.0010484178421654594 0.0 0.670953379445564 2.723163226403791E-4 76-77 1.42966069386199E-4 0.0010824573824955068 0.0 0.6741803278688525 2.791242307063885E-4 78-79 1.6338979358422744E-4 0.0010892652905615163 0.0 0.6761273895757312 2.85932138772398E-4 80-81 1.6338979358422744E-4 0.0010960731986275258 0.0 0.676706061761342 3.2677958716845483E-4 82-83 1.6338979358422744E-4 0.001116496922825554 0.0 0.6773323893034149 3.676270355645117E-4 84-85 1.6338979358422744E-4 0.001130112738957573 0.0 0.6776319372583193 3.676270355645117E-4 86-87 1.6338979358422744E-4 0.001143728555089592 0.0 0.6777272479712434 3.676270355645117E-4 88 1.6338979358422744E-4 0.0012662709002777626 0.0 0.6777544796035074 3.676270355645117E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10595 0.0 52.509724 1 GTATCAA 19590 0.0 37.94553 1 TCAACGC 21790 0.0 33.46573 4 ATCAACG 22110 0.0 32.885498 3 TATCAAC 22295 0.0 32.786312 2 CAACGCA 22520 0.0 32.380917 5 AACGCAG 23365 0.0 31.282946 6 CGAGACC 5245 0.0 28.689592 86-87 AGACCGA 5605 0.0 27.692633 88-89 ACGCAGA 26600 0.0 27.41422 7 GAGACCG 5510 0.0 26.905727 88-89 CGCAGAG 27540 0.0 26.494015 8 ACCGAGG 5930 0.0 26.389622 90-91 TGGTATC 4615 0.0 26.367529 2 GACCGAG 5770 0.0 26.238604 90-91 CCCACGA 5785 0.0 25.40208 82-83 GTGGTAT 5315 0.0 25.304838 1 ACGAGAC 5900 0.0 25.271002 86-87 CACGAGA 5925 0.0 25.213411 84-85 GCGCAGA 1565 0.0 24.826946 1 >>END_MODULE