##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139604_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5575256 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.41002224830573 32.0 25.0 33.0 18.0 33.0 2 29.6221784255288 31.0 28.0 33.0 25.0 33.0 3 31.999581005787 33.0 31.0 33.0 29.0 34.0 4 31.84319572051938 33.0 31.0 33.0 29.0 34.0 5 32.83956539394783 33.0 33.0 34.0 32.0 34.0 6 36.801409657242644 38.0 37.0 38.0 34.0 38.0 7 36.95503793906504 38.0 38.0 38.0 35.0 38.0 8 37.10246435320638 38.0 38.0 38.0 36.0 38.0 9 37.17819863339011 38.0 38.0 38.0 36.0 38.0 10-11 37.299902013468085 38.0 38.0 38.0 36.5 38.0 12-13 37.36178885776725 38.0 38.0 38.0 37.0 38.0 14-15 37.37219447860331 38.0 38.0 38.0 37.0 38.0 16-17 37.43235144718018 38.0 38.0 38.0 37.0 38.0 18-19 37.422012191009706 38.0 38.0 38.0 37.0 38.0 20-21 37.43529435300042 38.0 38.0 38.0 37.0 38.0 22-23 37.44400988963325 38.0 38.0 38.0 37.0 38.0 24-25 37.45977957883383 38.0 38.0 38.0 37.0 38.0 26-27 37.419118434247764 38.0 38.0 38.0 37.0 38.0 28-29 37.386122936247915 38.0 38.0 38.0 37.0 38.0 30-31 37.40462475956774 38.0 38.0 38.0 37.0 38.0 32-33 37.39644295518528 38.0 38.0 38.0 37.0 38.0 34-35 37.365507335065814 38.0 38.0 38.0 37.0 38.0 36-37 37.34340300440675 38.0 38.0 38.0 37.0 38.0 38-39 37.348266619233065 38.0 38.0 38.0 37.0 38.0 40-41 37.349488056815865 38.0 38.0 38.0 37.0 38.0 42-43 37.31049940654829 38.0 38.0 38.0 37.0 38.0 44-45 37.27357828965421 38.0 38.0 38.0 37.0 38.0 46-47 37.24773910164629 38.0 38.0 38.0 37.0 38.0 48-49 37.190022771839125 38.0 38.0 38.0 37.0 38.0 50-51 37.14843154014571 38.0 38.0 38.0 37.0 38.0 52-53 37.13872550464337 38.0 38.0 38.0 37.0 38.0 54-55 37.12451807349933 38.0 38.0 38.0 36.5 38.0 56-57 37.076509671739345 38.0 38.0 38.0 36.0 38.0 58-59 37.0607664828929 38.0 38.0 38.0 36.0 38.0 60-61 37.08816374874097 38.0 38.0 38.0 36.0 38.0 62-63 37.102736335063256 38.0 38.0 38.0 36.0 38.0 64-65 37.11302703742108 38.0 38.0 38.0 36.0 38.0 66-67 37.119331867479644 38.0 38.0 38.0 36.0 38.0 68-69 37.116607183360145 38.0 38.0 38.0 36.0 38.0 70-71 37.1133840651388 38.0 38.0 38.0 36.0 38.0 72-73 37.112869687794614 38.0 38.0 38.0 36.0 38.0 74-75 37.09814821677851 38.0 38.0 38.0 36.0 38.0 76-77 37.081373235684666 38.0 38.0 38.0 36.0 38.0 78-79 37.08695082239256 38.0 38.0 38.0 36.0 38.0 80-81 37.08906805498488 38.0 38.0 38.0 36.0 38.0 82-83 37.042369340037894 38.0 38.0 38.0 36.0 38.0 84-85 37.03150282917116 38.0 38.0 38.0 36.0 38.0 86-87 37.03379801096273 38.0 38.0 38.0 36.0 38.0 88-89 37.02526726142729 38.0 38.0 38.0 36.0 38.0 90-91 37.00478452325278 38.0 38.0 38.0 36.0 38.0 92-93 36.9994869769091 38.0 38.0 38.0 36.0 38.0 94-95 36.98075812147589 38.0 38.0 38.0 36.0 38.0 96-97 36.95386489373243 38.0 38.0 38.0 35.0 38.0 98-99 36.92597263674848 38.0 38.0 38.0 35.0 38.0 100 35.61531847769278 38.0 36.0 38.0 30.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 6.0 20 15.0 21 53.0 22 280.0 23 895.0 24 2121.0 25 4438.0 26 8158.0 27 13787.0 28 22126.0 29 33066.0 30 44492.0 31 57290.0 32 73416.0 33 97902.0 34 147196.0 35 272553.0 36 823424.0 37 3974036.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34583237074674 20.978103965091467 14.158094265088456 23.517969399073337 2 15.239826280118645 20.621056468288877 41.75164198723146 22.38747526436102 3 18.357856801029154 26.28888114010448 30.248545847333162 25.10471621153321 4 13.01265807345887 17.80296725388036 38.60999387292709 30.57438079973368 5 13.601788762194067 37.32172106301204 35.3888218864367 13.687668288357191 6 30.13526956158643 37.73467608019604 18.452665159765377 13.677389198452156 7 26.643260865510033 32.89326983370808 22.889137288045607 17.574332012736278 8 24.344227422023312 36.84704343621172 20.92551445171307 17.8832146900519 9 25.75205515226565 17.115016781292194 21.42116882166487 35.711759244777284 10-11 24.31199571822352 26.862407753114837 28.61599539106366 20.20960113759799 12-13 25.200340576289232 24.55936552509876 28.85628928967567 21.384004608936344 14-15 22.382676239440844 25.82518183918371 26.775470041196314 25.016671880179135 16-17 21.625491277889303 28.927120117892347 27.496244118655717 21.951144485562637 18-19 21.633203928214236 27.899481207679074 29.498636475168137 20.968678388938553 20-21 22.61362212648278 26.9983694759732 29.401000125286952 20.987008272257064 22-23 22.290209045430384 26.824933342290088 29.31821734651148 21.56664026576805 24-25 21.995819118857682 26.96752650453688 29.463336384770226 21.573317991835207 26-27 21.86342266252219 27.172783966910696 29.400243849335165 21.563549521231945 28-29 21.787988227162664 27.150475604785857 29.48980332741604 21.57173284063544 30-31 22.095669832682784 27.035172529114266 29.322424269761214 21.546733368441735 32-33 21.820398018107 27.273207168210295 29.249992478088714 21.65640233559399 34-35 22.010898571305777 27.23335887257605 29.285678197045755 21.470064359072413 36-37 22.00917882820532 27.06222093855471 29.245276164110834 21.683324069129128 38-39 21.79802899343955 27.291551687015588 29.33637083884946 21.574048480695403 40-41 22.11196044843905 27.143484550401926 29.18214299375048 21.562412007408543 42-43 22.01941638626029 27.241361404347092 28.921161490384932 21.818060719007683 44-45 22.015526857536962 27.34549953557064 28.870742375356244 21.768231231536156 46-47 22.128705378918536 27.333325056854203 28.563102451471007 21.974867112756254 48-49 22.088145360427223 27.410275580196814 28.523394156857762 21.9781849025182 50-51 22.042208702885162 27.576742656517496 28.360195761720075 22.02085287887727 52-53 22.24348389308902 27.5357469769446 28.20765090346489 22.013118226501486 54-55 22.241489625866258 27.498498845186038 28.233146935227964 22.026864593719743 56-57 22.145653270870717 27.59650162181671 28.228484471360886 22.029360635951683 58-59 22.113167379506972 27.55395078391023 28.264827332601627 22.068054503981173 60-61 22.176327464248594 27.594647932932386 28.274224032749988 21.954800570069025 62-63 22.095389413815997 27.617357339683807 28.311901721944338 21.975351524555858 64-65 22.066120840210896 27.55170976605549 28.3442919952613 22.037877398472315 66-67 22.13440892191757 27.764303356049247 28.050886984939883 22.0504007370933 68-69 22.107484789838473 27.658821893687 28.221688064730717 22.012005251743812 70-71 22.117536942249874 27.34663655081708 28.367436265091307 22.16839024184174 72-73 22.25307344108384 27.48208361450843 28.120903368266454 22.143939576141282 74-75 22.00952802102979 27.67677888492702 28.101056710658217 22.212636383384964 76-77 22.264188245624553 27.47504152399223 28.000450063652487 22.26032016673073 78-79 22.259933188022707 27.513596678750122 27.9430528873911 22.283417245836066 80-81 22.24501065009689 27.560607882222087 27.858005324710096 22.336376142970924 82-83 22.370594561225733 27.493321361267697 27.922708490361103 22.21337558714546 84-85 22.455684550724275 27.51560198335265 27.812996397891084 22.21571706803199 86-87 22.256348838256955 27.581520882851418 27.93411806006663 22.22801221882499 88-89 22.34575185106516 27.56858277438216 27.868302370966784 22.21736300358589 90-91 22.417416084003428 27.601845000323312 27.795005648045546 22.185733267627718 92-93 22.49413215703795 27.59625126033377 27.79541182842906 22.114204754199214 94-95 22.35134047482033 27.65876933363005 27.814068245741137 22.175821945808487 96-97 22.507491544940358 27.700387063674608 27.8771228329177 21.91499855846733 98-99 23.485833109703556 29.66425865716948 28.05756297931503 18.79234525381193 100 29.990706513992492 40.649289684990734 29.36000380101677 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1606.0 1 1409.0 2 1468.0 3 1865.5 4 2430.5 5 3476.0 6 4470.5 7 5789.5 8 7282.5 9 8092.5 10 8082.5 11 7880.5 12 8668.5 13 11010.0 14 15753.5 15 21106.0 16 24829.5 17 26819.0 18 26518.0 19 24183.0 20 21219.5 21 18734.5 22 18160.5 23 20184.5 24 24699.0 25 32061.5 26 42602.0 27 54218.5 28 65467.5 29 78278.5 30 90392.0 31 101984.5 32 116916.0 33 134059.0 34 150051.0 35 165532.5 36 182640.5 37 194931.5 38 203489.5 39 210979.5 40 218512.0 41 225208.0 42 227994.5 43 232211.0 44 237055.5 45 239675.0 46 239886.0 47 239068.5 48 238420.5 49 237261.0 50 232913.5 51 225717.5 52 216030.0 53 203196.0 54 189433.0 55 175326.5 56 159468.5 57 143141.0 58 127622.5 59 110355.5 60 91938.0 61 73739.0 62 57077.0 63 43538.5 64 33099.0 65 24769.0 66 17899.0 67 13385.5 68 10094.0 69 7355.0 70 5436.0 71 3834.5 72 2585.5 73 1746.5 74 1188.0 75 798.5 76 522.5 77 324.5 78 215.0 79 141.0 80 89.5 81 52.5 82 34.0 83 32.0 84 26.0 85 17.0 86 8.0 87 3.5 88 3.0 89 3.5 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005452664415768532 3 0.003372042467646329 4 0.0 5 7.174558441800699E-5 6 3.228551298810315E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.6145142680007576E-4 26-27 0.001955636651680928 28-29 0.00782568747811926 30-31 0.00280332240426946 32-33 0.005413681372693409 34-35 0.0030638921842550647 36-37 0.0011898003051883195 38-39 3.6586153348300724E-5 40-41 1.1981955543626852E-4 42-43 0.0026381020899063335 44-45 7.781838501536678E-4 46-47 4.6436518436245505E-4 48-49 0.0020399877830590794 50-51 5.51302199976265E-4 52-53 0.0 54-55 0.004930611242266026 56-57 0.051804507111300836 58-59 0.07780053339195284 60-61 0.0363506683853811 62-63 0.01584093694898032 64-65 0.0016625661863984532 66-67 0.0 68-69 0.00236293350599626 70-71 0.004373597848531212 72-73 0.015139909913222652 74-75 0.01826486207795064 76-77 0.02420544817593714 78-79 0.0070324624484894415 80-81 0.008322691265143801 82-83 0.036788463028450465 84-85 0.021126707747017193 86-87 0.015321367730212303 88-89 0.007402413871674964 90-91 1.0757032110936078E-4 92-93 0.0 94-95 0.0 96-97 3.73938295693951E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 188.0 22-23 503.0 24-25 670.0 26-27 1614.0 28-29 4309.0 30-31 13304.0 32-33 17172.0 34-35 23699.0 36-37 36848.0 38-39 41861.0 40-41 41452.0 42-43 47100.0 44-45 55892.0 46-47 56571.0 48-49 52282.0 50-51 46926.0 52-53 42933.0 54-55 46368.0 56-57 47204.0 58-59 49348.0 60-61 48111.0 62-63 46842.0 64-65 49389.0 66-67 51647.0 68-69 52680.0 70-71 51486.0 72-73 48746.0 74-75 49134.0 76-77 51415.0 78-79 52537.0 80-81 52827.0 82-83 48740.0 84-85 48390.0 86-87 49420.0 88-89 51149.0 90-91 51998.0 92-93 50836.0 94-95 57728.0 96-97 165884.0 98-99 1239154.0 100-101 2630875.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.90192706946345 #Duplication Level Percentage of deduplicated Percentage of total 1 91.78174797040121 80.67792516402083 2 5.9250877217655145 10.416532575976113 3 1.3123091850228081 3.4606351882338577 4 0.4566762935462993 1.6057090499863875 5 0.20213006265779435 0.8883811013145759 6 0.10543026108257136 0.5560513872356807 7 0.05773451611610642 0.35524826575201246 8 0.038352063756778056 0.2696976249049374 9 0.028273213806012696 0.22367429801959277 >10 0.08939587337335499 1.182564783420082 >50 0.0016617253049170347 0.09470604288201864 >100 0.0011101564248226692 0.202087338922414 >500 6.06378282569676E-5 0.03819075364091282 >1k 3.0318913588529785E-5 0.02859642569053465 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.7936396104501747E-5 2 0.0 0.0 0.0 1.7936396104501747E-5 1.7936396104501747E-5 3 0.0 0.0 0.0 1.7936396104501747E-5 1.7936396104501747E-5 4 0.0 7.174558441800699E-5 0.0 1.7936396104501747E-5 3.5872792209003494E-5 5 0.0 7.174558441800699E-5 0.0 1.7936396104501747E-5 3.5872792209003494E-5 6 5.3809188313505244E-5 7.174558441800699E-5 0.0 1.7936396104501747E-5 3.5872792209003494E-5 7 5.3809188313505244E-5 7.174558441800699E-5 0.0 1.7936396104501747E-5 3.5872792209003494E-5 8 5.3809188313505244E-5 7.174558441800699E-5 0.0 1.7936396104501747E-5 3.5872792209003494E-5 9 5.3809188313505244E-5 1.2555477273151224E-4 0.0 1.7936396104501747E-5 3.5872792209003494E-5 10-11 5.3809188313505244E-5 1.2555477273151224E-4 0.0 7.174558441800699E-5 3.5872792209003494E-5 12-13 5.3809188313505244E-5 1.2555477273151224E-4 0.0 1.1658657467926136E-4 3.5872792209003494E-5 14-15 5.3809188313505244E-5 1.9730035714951924E-4 0.0 1.345229707837631E-4 7.174558441800699E-5 16-17 1.6142756494051574E-4 1.9730035714951924E-4 0.0 1.6142756494051574E-4 8.968198052250874E-5 18-19 1.6142756494051574E-4 2.3317314935852274E-4 0.0 2.86982337672028E-4 8.968198052250874E-5 20-21 1.6142756494051574E-4 2.8698233767202795E-4 0.0 3.1388693182878057E-4 8.968198052250874E-5 22-23 1.6142756494051574E-4 3.228551298810315E-4 0.0 3.228551298810315E-4 1.1658657467926136E-4 24-25 1.6142756494051574E-4 3.6769612014228586E-4 0.0 3.4079152598553324E-4 1.4349116883601398E-4 26-27 1.6142756494051574E-4 3.946007142990385E-4 0.0 5.02219090926049E-4 1.6142756494051574E-4 28-29 1.6142756494051574E-4 3.946007142990385E-4 0.0 9.416607954863417E-4 1.6142756494051574E-4 30-31 1.6142756494051574E-4 4.3047350650804195E-4 0.0 0.0021792721266969623 1.6142756494051574E-4 32-33 1.6142756494051574E-4 4.3047350650804195E-4 0.0 0.005165682078096504 1.7936396104501748E-4 34-35 1.9730035714951924E-4 4.5737810066479457E-4 0.0 0.008896452467832867 1.7936396104501748E-4 36-37 1.9730035714951924E-4 4.842826948215472E-4 0.0 0.01565847379923003 1.7936396104501748E-4 38-39 1.9730035714951924E-4 5.02219090926049E-4 0.0 0.03410605719271008 1.9730035714951924E-4 40-41 1.9730035714951924E-4 5.02219090926049E-4 0.0 0.05442799397911056 1.9730035714951924E-4 42-43 2.1523675325402098E-4 5.02219090926049E-4 0.0 0.06571895532689441 2.062685552017701E-4 44-45 2.2420495130627186E-4 5.470600811873033E-4 0.0 0.07958378951567426 2.1523675325402098E-4 46-47 2.3317314935852274E-4 5.919010714485577E-4 0.0 0.09356521027913337 2.1523675325402098E-4 48-49 2.3317314935852274E-4 6.008692695008086E-4 0.0 0.10664981123736739 2.4214134741077362E-4 50-51 2.511095454630245E-4 7.443604383368226E-4 0.0 0.12102583271512554 2.511095454630245E-4 52-53 2.6904594156752624E-4 7.533286363890734E-4 0.0 0.16494309857699807 2.6007774351527533E-4 54-55 2.780141396197771E-4 7.533286363890734E-4 0.0 0.22087774982888678 2.6904594156752624E-4 56-57 2.8698233767202795E-4 7.533286363890734E-4 0.0 0.2971433060652282 2.6904594156752624E-4 58-59 3.049187337765297E-4 7.533286363890734E-4 0.0 0.3431322256771707 2.780141396197771E-4 60-61 3.4079152598553324E-4 7.622968344413243E-4 0.0 0.35858443092119896 2.8698233767202795E-4 62-63 3.5872792209003495E-4 7.712650324935751E-4 0.0 0.37153450890864925 2.8698233767202795E-4 64-65 3.5872792209003495E-4 8.609470130160839E-4 0.0 0.3788346221231814 2.8698233767202795E-4 66-67 3.766643181945367E-4 8.878516071728366E-4 0.0 0.3857939438117281 2.8698233767202795E-4 68-69 3.946007142990385E-4 9.326925974340909E-4 0.0 0.39188335028920646 2.8698233767202795E-4 70-71 4.0356891235128933E-4 9.775335876953453E-4 0.0 0.3974615694777065 2.8698233767202795E-4 72-73 4.484099026125437E-4 9.865017857475962E-4 0.0 0.40193670030577966 3.5872792209003495E-4 74-75 4.484099026125437E-4 0.001004438181852098 0.0 0.40559572511109804 3.5872792209003495E-4 76-77 4.484099026125437E-4 0.001058247370165603 0.0 0.40920990892615516 3.5872792209003495E-4 78-79 4.484099026125437E-4 0.0010941201623746067 0.0 0.41178378176715114 3.5872792209003495E-4 80-81 4.484099026125437E-4 0.0010941201623746067 0.0 0.4125729831957492 3.5872792209003495E-4 82-83 4.484099026125437E-4 0.0010941201623746067 0.0 0.413245598049668 3.946007142990385E-4 84-85 4.484099026125437E-4 0.0010941201623746067 0.0 0.41357742137760134 3.946007142990385E-4 86-87 4.5737810066479457E-4 0.0011479293506881118 0.0 0.41374781714059405 3.946007142990385E-4 88 4.663462987170455E-4 0.0012017385390016171 0.0 0.41375678533864635 3.946007142990385E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8780 0.0 53.3189 1 GTATCAA 15940 0.0 36.00651 1 TCAACGC 19260 0.0 29.274494 4 ATCAACG 19510 0.0 28.964708 3 TATCAAC 19860 0.0 28.624653 2 CAACGCA 19725 0.0 28.605656 5 AACGCAG 20440 0.0 27.605019 6 TGGTATC 3765 0.0 27.098303 2 GTGGTAT 4330 0.0 25.6956 1 ACGCAGA 23380 0.0 24.15147 7 CGCAGAG 24075 0.0 23.454262 8 GCAGAGT 27550 0.0 20.526352 9 GAGTACT 15525 0.0 20.20016 12-13 CAGAGTA 26745 0.0 19.276205 10-11 GTACTTT 16590 0.0 18.94153 14-15 GTACATG 20230 0.0 18.118372 1 TACATGG 20140 0.0 17.907482 2 AGAGTAC 25330 0.0 17.43598 10-11 ACATGGG 20315 0.0 17.049768 3 AGTACTT 16930 0.0 16.267195 12-13 >>END_MODULE