##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139603_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4003646 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.662326039814708 32.0 25.0 33.0 18.0 34.0 2 29.991046161423863 31.0 29.0 33.0 25.0 33.0 3 32.13025127596196 33.0 31.0 33.0 30.0 34.0 4 32.00955129399552 33.0 31.0 33.0 29.0 34.0 5 32.89866861355874 33.0 33.0 34.0 32.0 34.0 6 36.87479062834227 38.0 37.0 38.0 35.0 38.0 7 37.05782354383979 38.0 38.0 38.0 35.0 38.0 8 37.174790928069065 38.0 38.0 38.0 36.0 38.0 9 37.255774861214 38.0 38.0 38.0 36.0 38.0 10-11 37.3547424023003 38.0 38.0 38.0 37.0 38.0 12-13 37.413500469322216 38.0 38.0 38.0 37.0 38.0 14-15 37.419791859719865 38.0 38.0 38.0 37.0 38.0 16-17 37.46915848703907 38.0 38.0 38.0 37.0 38.0 18-19 37.46317019536692 38.0 38.0 38.0 37.0 38.0 20-21 37.47637301341551 38.0 38.0 38.0 37.0 38.0 22-23 37.48445439168385 38.0 38.0 38.0 37.0 38.0 24-25 37.49542154500115 38.0 38.0 38.0 37.0 38.0 26-27 37.46227731772407 38.0 38.0 38.0 37.0 38.0 28-29 37.43602899818899 38.0 38.0 38.0 37.0 38.0 30-31 37.45064989582418 38.0 38.0 38.0 37.0 38.0 32-33 37.440196209370484 38.0 38.0 38.0 37.0 38.0 34-35 37.410439557825 38.0 38.0 38.0 37.0 38.0 36-37 37.39021972339738 38.0 38.0 38.0 37.0 38.0 38-39 37.379435342342816 38.0 38.0 38.0 37.0 38.0 40-41 37.392953278981004 38.0 38.0 38.0 37.0 38.0 42-43 37.3535594741697 38.0 38.0 38.0 37.0 38.0 44-45 37.31123970428408 38.0 38.0 38.0 37.0 38.0 46-47 37.270956907394435 38.0 38.0 38.0 37.0 38.0 48-49 37.21105459470199 38.0 38.0 38.0 37.0 38.0 50-51 37.16646220405254 38.0 38.0 38.0 37.0 38.0 52-53 37.160374206403986 38.0 38.0 38.0 37.0 38.0 54-55 37.14443907749731 38.0 38.0 38.0 37.0 38.0 56-57 37.09893751799288 38.0 38.0 38.0 36.0 38.0 58-59 37.07548708199869 38.0 38.0 38.0 36.0 38.0 60-61 37.101922124705936 38.0 38.0 38.0 36.0 38.0 62-63 37.11364413582467 38.0 38.0 38.0 36.0 38.0 64-65 37.127781372272594 38.0 38.0 38.0 36.0 38.0 66-67 37.13084722698645 38.0 38.0 38.0 36.0 38.0 68-69 37.12362978978318 38.0 38.0 38.0 36.0 38.0 70-71 37.12743831662307 38.0 38.0 38.0 36.0 38.0 72-73 37.12598975758829 38.0 38.0 38.0 36.0 38.0 74-75 37.108936469728214 38.0 38.0 38.0 36.0 38.0 76-77 37.09734865414818 38.0 38.0 38.0 36.0 38.0 78-79 37.10625395136863 38.0 38.0 38.0 36.0 38.0 80-81 37.11106465589202 38.0 38.0 38.0 36.0 38.0 82-83 37.06746683422456 38.0 38.0 38.0 36.0 38.0 84-85 37.05779246509496 38.0 38.0 38.0 36.0 38.0 86-87 37.06672416452531 38.0 38.0 38.0 36.0 38.0 88-89 37.05776267408022 38.0 38.0 38.0 36.0 38.0 90-91 37.040606545288796 38.0 38.0 38.0 36.0 38.0 92-93 37.03737119667272 38.0 38.0 38.0 36.0 38.0 94-95 37.01678484614874 38.0 38.0 38.0 36.0 38.0 96-97 36.98991379484193 38.0 38.0 38.0 36.0 38.0 98-99 36.955969278828704 38.0 38.0 38.0 35.5 38.0 100 35.63783399909238 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 4.0 20 12.0 21 49.0 22 196.0 23 581.0 24 1510.0 25 3101.0 26 5513.0 27 9177.0 28 14964.0 29 22587.0 30 30090.0 31 38624.0 32 49184.0 33 65981.0 34 98831.0 35 184136.0 36 585784.0 37 2893321.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.366993984982685 21.866668531633415 14.408966227283832 22.357371256100063 2 15.43322034575697 20.791029602411957 42.1965634125079 21.579186639323172 3 18.18543094329066 27.645289041922226 30.413152540848788 23.75612747393833 4 13.112472980877929 18.431050097835822 38.50060669699569 29.95587022429056 5 13.250082487374623 38.098776539266865 35.39398992367701 13.257151049681504 6 29.65857277199345 38.44323970591725 18.1413640354328 13.7568234866565 7 26.91491705310609 33.45792809853818 22.615236212192585 17.011918636163138 8 24.822074678930157 37.08756968023646 20.54412403094579 17.546231609887588 9 26.350131854814336 17.26651157469966 21.506796554940173 34.876560015545834 10-11 24.556291939896784 27.237248248221746 28.187606996222943 20.018852815658526 12-13 25.71968151030336 25.276910096447086 28.316564451502458 20.686843941747096 14-15 23.049989934175 26.257004240634664 26.387472818525914 24.305533006664426 16-17 21.682311573001208 29.59909542452055 27.207412943102362 21.511180059375878 18-19 21.78993847108361 28.174781186948096 29.534242038382015 20.50103830358628 20-21 22.681853485629475 27.008290997049002 29.599185424870043 20.71067009245148 22-23 22.64260240537699 26.963945323848115 29.505123422512685 20.888328848262212 24-25 22.29091713559658 27.44838627191568 29.567574313112978 20.693122279374755 26-27 21.829498345419935 27.428780209065746 29.844418367906684 20.897303077607635 28-29 21.545184407883088 26.88569302132027 30.14219098712661 21.42693158367003 30-31 21.99723083455082 26.96991804597867 29.979040260609658 21.05381085886086 32-33 21.626523061606214 27.38080205793379 29.84329413142346 21.149380749036535 34-35 21.823562347862577 27.513700726525197 30.063629305361367 20.59910762025086 36-37 22.025785998753044 27.14910824351796 29.580241328678568 21.244864429050423 38-39 21.687351001272727 27.460827988896703 29.743683452784154 21.108137557046415 40-41 21.768154325592622 27.159982785101068 30.105802810240405 20.966060079065905 42-43 22.08682353985953 27.21547470726668 29.46374233721729 21.233959415656496 44-45 21.672170369872365 27.47769339250502 29.514673364537643 21.33546287308497 46-47 22.251252519998356 27.489235000714118 28.903352131562887 21.356160347724636 48-49 22.022251721497852 27.743363713730723 28.59815727295813 21.63622729181329 50-51 21.827564995194994 27.78404079847887 28.560376297289352 21.828017909036785 52-53 22.05533359785003 27.760120193128657 28.75940188869363 21.425144320327682 54-55 22.145335174695134 27.922327297291005 28.48821503200923 21.444122496004635 56-57 22.129627028773882 28.0374472156326 28.211557957043887 21.62136779854963 58-59 21.799612746904 28.11439960694643 28.6078414875389 21.478146158610667 60-61 22.24599273792912 28.68953739193788 27.984986665578283 21.079483204554723 62-63 21.867252055491665 28.830228229947092 28.21740052807228 21.085119186488967 64-65 21.948297964840833 28.575656122384522 28.165562446352727 21.310483466421918 66-67 22.145130904048653 28.901502402652103 27.790896715161246 21.162469978138006 68-69 21.98723420947356 28.522257254535404 28.19754907445042 21.29295946154061 70-71 22.171870334869144 28.15092282727982 28.359858713788515 21.31734812406252 72-73 22.463753870581318 28.22123817397733 27.92379572609503 21.391212229346323 74-75 21.909543290196996 28.33431464551915 28.140626228962155 21.6155158353217 76-77 22.13029189152228 27.87179653823818 28.46670067286143 21.53121089737811 78-79 22.107276362687994 27.777650681515574 28.360499614680446 21.754573341115982 80-81 22.03368372560863 28.221284860054368 28.077979473591324 21.667051940745672 82-83 22.213591469237493 27.901545315683563 28.271573207714695 21.61329000736425 84-85 22.05046494307905 27.88986062347058 28.247260346845408 21.81241408660496 86-87 22.028737843723835 28.072756976540507 28.403343553501408 21.495161626234246 88-89 22.13331609187368 27.888649294731106 28.300784253421497 21.67725035997372 90-91 22.166182741249905 27.896454021886356 28.337375005627386 21.599988231236356 92-93 22.255187810367026 27.97063335997667 28.189820662646074 21.584358167010226 94-95 22.058293359641056 27.766946915605285 28.393809783882208 21.780949940871455 96-97 22.3777080655615 27.92922970270155 28.217518205081028 21.475544026655918 98-99 23.204672313701046 29.781653300879146 28.4663732783332 18.547301107086607 100 29.802594637166465 40.19550372838153 30.001901634452004 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4250.0 1 3260.5 2 1968.5 3 1752.5 4 2189.0 5 3000.5 6 3766.0 7 4896.5 8 6315.5 9 7299.5 10 7210.5 11 6751.0 12 7252.0 13 9128.5 14 13296.0 15 18256.5 16 21867.0 17 23635.0 18 23250.0 19 21048.0 20 18058.0 21 15164.0 22 13411.0 23 13594.5 24 15495.0 25 19683.0 26 26032.5 27 33274.0 28 41171.5 29 50921.5 30 62315.5 31 73422.5 32 90071.0 33 110882.5 34 124519.0 35 138037.0 36 156717.0 37 167605.0 38 175365.5 39 178647.5 40 178422.0 41 176157.0 42 171333.5 43 176910.5 44 183646.0 45 181888.5 46 172618.5 47 163453.0 48 158831.5 49 154108.0 50 148933.5 51 144983.5 52 140523.0 53 134947.0 54 128431.0 55 120068.0 56 110749.0 57 100853.0 58 90359.0 59 79127.5 60 67397.5 61 55405.0 62 43640.0 63 34415.5 64 28531.5 65 22405.0 66 15092.0 67 10228.5 68 7347.0 69 5330.5 70 3912.5 71 2811.5 72 1995.5 73 1349.0 74 907.5 75 625.0 76 413.0 77 244.5 78 157.0 79 122.0 80 96.0 81 65.0 82 38.0 83 22.5 84 17.0 85 13.0 86 11.5 87 10.0 88 7.0 89 4.5 90 3.5 91 2.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00639417171248407 3 0.0040213345535544355 4 0.0 5 7.49316997556727E-5 6 2.747495657707999E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 1.7488420479589952E-4 26-27 0.0017493271650391468 28-29 0.007226942240727196 30-31 0.002179214328108771 32-33 0.004736521267608678 34-35 0.0028512140620868265 36-37 0.001116967858742152 38-39 2.5610775375188254E-5 40-41 3.880724132774578E-5 42-43 0.0025074007500262493 44-45 5.151233614784411E-4 46-47 3.0786685481347154E-4 48-49 0.0018845316288128887 50-51 4.803608580562486E-4 52-53 0.0 54-55 0.0050211336429418565 56-57 0.05033667436510565 58-59 0.07678285573115441 60-61 0.037967729027439556 62-63 0.016995208878755413 64-65 0.0020213697425622143 66-67 0.0 68-69 0.002442043813623827 70-71 0.004136712940009915 72-73 0.01574012719783909 74-75 0.019452626645832298 76-77 0.025780218398272936 78-79 0.008186144762084653 80-81 0.010107244491758868 82-83 0.03777351985521047 84-85 0.022737673789606058 86-87 0.016393027223284926 88-89 0.008753934246945864 90-91 5.317209663071465E-5 92-93 0.0 94-95 0.0 96-97 7.426282542202171E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 49.0 20-21 211.0 22-23 592.0 24-25 932.0 26-27 1938.0 28-29 4811.0 30-31 11974.0 32-33 15171.0 34-35 21136.0 36-37 32161.0 38-39 40195.0 40-41 36534.0 42-43 40608.0 44-45 49279.0 46-47 48558.0 48-49 45714.0 50-51 43533.0 52-53 36111.0 54-55 38051.0 56-57 40007.0 58-59 42006.0 60-61 40527.0 62-63 39269.0 64-65 41720.0 66-67 44608.0 68-69 47154.0 70-71 50888.0 72-73 39270.0 74-75 39440.0 76-77 40616.0 78-79 41998.0 80-81 42777.0 82-83 38689.0 84-85 37228.0 86-87 38571.0 88-89 40035.0 90-91 40414.0 92-93 38831.0 94-95 42548.0 96-97 106701.0 98-99 820114.0 100-101 1782677.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.3972780378331 #Duplication Level Percentage of deduplicated Percentage of total 1 92.8921514932375 83.04305494573467 2 5.338418071214204 9.54480089189058 3 1.0511540537772899 2.819109336183713 4 0.3435990174069241 1.2286726757061222 5 0.14240104432719558 0.636513287629805 6 0.07487134055674538 0.4015976429289994 7 0.0428138882925799 0.26792115529007454 8 0.02873213999763553 0.20548600863924552 9 0.018901376768210385 0.15207584708209887 >10 0.06176558302047776 0.9010281794255321 >50 0.0029833206373091623 0.1816745781710904 >100 0.0018352730675511636 0.3346258987609122 >500 3.319090633682398E-4 0.21905181855668907 >1k 4.148863292003589E-5 0.06438773400047709 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.49772332518909E-5 0.0 0.0 0.0 3 0.0 2.49772332518909E-5 0.0 0.0 0.0 4 0.0 4.99544665037818E-5 0.0 2.49772332518909E-5 0.0 5 0.0 4.99544665037818E-5 0.0 2.49772332518909E-5 0.0 6 0.0 4.99544665037818E-5 0.0 2.49772332518909E-5 0.0 7 0.0 7.493169975567271E-5 0.0 2.49772332518909E-5 0.0 8 0.0 9.99089330075636E-5 0.0 2.49772332518909E-5 0.0 9 0.0 2.247950992670181E-4 0.0 2.49772332518909E-5 0.0 10-11 0.0 2.247950992670181E-4 0.0 4.99544665037818E-5 0.0 12-13 0.0 2.247950992670181E-4 0.0 4.99544665037818E-5 0.0 14-15 0.0 3.247040322745817E-4 0.0 6.244308312972725E-5 0.0 16-17 0.0 3.247040322745817E-4 0.0 7.493169975567271E-5 0.0 18-19 0.0 3.3719264890052716E-4 0.0 9.99089330075636E-5 0.0 20-21 0.0 4.1212434865619987E-4 0.0 9.99089330075636E-5 0.0 22-23 0.0 4.6207881515998166E-4 0.0 9.99089330075636E-5 0.0 24-25 0.0 5.120332816637634E-4 0.0 1.748406327632363E-4 0.0 26-27 0.0 5.245218982897089E-4 0.0 3.6216988215241803E-4 0.0 28-29 2.49772332518909E-5 5.370105149156544E-4 0.0 8.117600806864543E-4 0.0 30-31 2.49772332518909E-5 6.11942214671327E-4 0.0 0.003022245223478799 0.0 32-33 2.49772332518909E-5 6.244308312972725E-4 0.0 0.007280863492926198 0.0 34-35 2.49772332518909E-5 7.243397643048361E-4 0.0 0.012413684926189779 0.0 36-37 2.49772332518909E-5 8.367373139383452E-4 0.0 0.021667749846015355 0.0 38-39 2.49772332518909E-5 8.492259305642907E-4 0.0 0.0415995819810243 0.0 40-41 2.49772332518909E-5 9.241576303199633E-4 0.0 0.0639417171248407 0.0 42-43 2.49772332518909E-5 9.366462469459088E-4 0.0 0.07645531098403804 0.0 44-45 2.49772332518909E-5 0.0010740210298313087 0.0 0.09134174200216502 0.0 46-47 2.49772332518909E-5 0.0011989071960907633 0.0 0.10773929563203141 0.0 48-49 2.49772332518909E-5 0.0011989071960907633 0.0 0.12283803313279945 0.0 50-51 2.49772332518909E-5 0.0013987250621058905 0.0 0.13952282494506257 0.0 52-53 2.49772332518909E-5 0.0013987250621058905 0.0 0.17854975190114208 0.0 54-55 2.49772332518909E-5 0.0013987250621058905 0.0 0.22320904495552302 0.0 56-57 2.49772332518909E-5 0.0014237022953577814 0.0 0.2767477444309512 0.0 58-59 2.49772332518909E-5 0.0014237022953577814 0.0 0.3184847011948609 0.0 60-61 2.49772332518909E-5 0.0014237022953577814 0.0 0.3345325735592008 0.0 62-63 2.49772332518909E-5 0.0014486795286096723 0.0 0.3516294897201201 2.49772332518909E-5 64-65 2.49772332518909E-5 0.0016235201613729086 0.0 0.36042147582478573 2.49772332518909E-5 66-67 2.49772332518909E-5 0.0016235201613729086 0.0 0.3675899417680784 3.7465849877836354E-5 68-69 2.49772332518909E-5 0.0017109404777545267 0.0 0.3749707141940122 4.99544665037818E-5 70-71 2.49772332518909E-5 0.001773383560884254 0.0 0.38195185088791567 4.99544665037818E-5 72-73 2.49772332518909E-5 0.001773383560884254 0.0 0.3872969788038203 4.99544665037818E-5 74-75 2.49772332518909E-5 0.0018233380273880357 0.0 0.39139324505713047 4.99544665037818E-5 76-77 2.49772332518909E-5 0.0018982697271437085 0.0 0.3949899666454027 4.99544665037818E-5 78-79 2.49772332518909E-5 0.0019232469603955994 0.0 0.3971504973216913 4.99544665037818E-5 80-81 2.49772332518909E-5 0.0019732014268993812 0.0 0.3979372801691259 4.99544665037818E-5 82-83 2.49772332518909E-5 0.0019856900435253266 0.0 0.3986116654669269 4.99544665037818E-5 84-85 2.49772332518909E-5 0.001998178660151272 0.0 0.398823971949568 4.99544665037818E-5 86-87 2.49772332518909E-5 0.0020356445100291084 0.0 0.3989238808825755 4.99544665037818E-5 88 2.49772332518909E-5 0.0021230648264107268 0.0 0.39896134673245337 4.99544665037818E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8330 0.0 55.1388 1 GTATCAA 15775 0.0 36.45998 1 TGGTATC 3370 0.0 30.85413 2 TCAACGC 19275 0.0 29.327215 4 ATCAACG 19575 0.0 28.878836 3 TATCAAC 19750 0.0 28.74874 2 CAACGCA 19845 0.0 28.48486 5 AACGCAG 20520 0.0 27.587753 6 GTGGTAT 4000 0.0 26.91567 1 ACCGAAC 1235 0.0 25.520859 8 GGACCGA 1285 0.0 24.527826 6 AGGACCG 1370 0.0 24.499926 5 ACGCAGA 23215 0.0 24.349861 7 CGCAGAG 23460 0.0 24.113016 8 GACCGAA 1325 0.0 22.860586 7 CCGAACC 1375 0.0 22.624678 9 TTAGCCG 615 0.0 22.60321 94 TGCGTAT 715 0.0 22.034176 94 GCAGAGT 26155 0.0 21.769272 9 GAGTACT 13120 0.0 21.246372 12-13 >>END_MODULE