##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139602_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8526854 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.95335102489148 32.0 18.0 33.0 18.0 33.0 2 29.547078676379353 31.0 27.0 33.0 25.0 33.0 3 31.966207349158317 33.0 31.0 33.0 29.0 34.0 4 31.860845043201163 33.0 31.0 33.0 29.0 34.0 5 32.84566969247978 33.0 33.0 34.0 32.0 34.0 6 36.832107597948784 38.0 37.0 38.0 35.0 38.0 7 37.000514726767925 38.0 38.0 38.0 35.0 38.0 8 37.134180320197814 38.0 38.0 38.0 36.0 38.0 9 37.216698210148785 38.0 38.0 38.0 36.0 38.0 10-11 37.329807218465334 38.0 38.0 38.0 36.5 38.0 12-13 37.3859063964271 38.0 38.0 38.0 37.0 38.0 14-15 37.393423940412255 38.0 38.0 38.0 37.0 38.0 16-17 37.44601578729975 38.0 38.0 38.0 37.0 38.0 18-19 37.436211467910674 38.0 38.0 38.0 37.0 38.0 20-21 37.44816710916895 38.0 38.0 38.0 37.0 38.0 22-23 37.45820450097328 38.0 38.0 38.0 37.0 38.0 24-25 37.473075147925854 38.0 38.0 38.0 37.0 38.0 26-27 37.433035121131084 38.0 38.0 38.0 37.0 38.0 28-29 37.40100948130284 38.0 38.0 38.0 37.0 38.0 30-31 37.41764125568392 38.0 38.0 38.0 37.0 38.0 32-33 37.409669601977924 38.0 38.0 38.0 37.0 38.0 34-35 37.379055945977285 38.0 38.0 38.0 37.0 38.0 36-37 37.35793378182397 38.0 38.0 38.0 37.0 38.0 38-39 37.36261945031332 38.0 38.0 38.0 37.0 38.0 40-41 37.36459951495719 38.0 38.0 38.0 37.0 38.0 42-43 37.330955583754445 38.0 38.0 38.0 37.0 38.0 44-45 37.2952291396038 38.0 38.0 38.0 37.0 38.0 46-47 37.27373714640845 38.0 38.0 38.0 37.0 38.0 48-49 37.218480486250655 38.0 38.0 38.0 37.0 38.0 50-51 37.17771428391596 38.0 38.0 38.0 37.0 38.0 52-53 37.167224215616955 38.0 38.0 38.0 37.0 38.0 54-55 37.15373876293464 38.0 38.0 38.0 37.0 38.0 56-57 37.109943626051226 38.0 38.0 38.0 36.0 38.0 58-59 37.093783710753144 38.0 38.0 38.0 36.0 38.0 60-61 37.11969936660575 38.0 38.0 38.0 36.0 38.0 62-63 37.13329293803993 38.0 38.0 38.0 36.0 38.0 64-65 37.142668838102296 38.0 38.0 38.0 36.0 38.0 66-67 37.14738298698259 38.0 38.0 38.0 36.0 38.0 68-69 37.14085137595625 38.0 38.0 38.0 36.0 38.0 70-71 37.13909069624913 38.0 38.0 38.0 36.0 38.0 72-73 37.13803958577343 38.0 38.0 38.0 36.0 38.0 74-75 37.12387559949891 38.0 38.0 38.0 36.0 38.0 76-77 37.108824749211536 38.0 38.0 38.0 36.0 38.0 78-79 37.11429464141453 38.0 38.0 38.0 36.0 38.0 80-81 37.11626877308339 38.0 38.0 38.0 36.0 38.0 82-83 37.075545846728446 38.0 38.0 38.0 36.0 38.0 84-85 37.061205639279976 38.0 38.0 38.0 36.0 38.0 86-87 37.06562217782955 38.0 38.0 38.0 36.0 38.0 88-89 37.054436601490615 38.0 38.0 38.0 36.0 38.0 90-91 37.03444848831823 38.0 38.0 38.0 36.0 38.0 92-93 37.02602503136255 38.0 38.0 38.0 36.0 38.0 94-95 37.011633306897906 38.0 38.0 38.0 36.0 38.0 96-97 36.98807037037865 38.0 38.0 38.0 36.0 38.0 98-99 36.95903086920816 38.0 38.0 38.0 35.5 38.0 100 35.655372850611116 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 6.0 20 28.0 21 109.0 22 362.0 23 1222.0 24 3128.0 25 6460.0 26 11975.0 27 20339.0 28 32709.0 29 48079.0 30 65033.0 31 83986.0 32 108253.0 33 145354.0 34 218643.0 35 411450.0 36 1266706.0 37 6103009.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.19665940099361 21.261827633028545 14.085746044203407 23.455766921774433 2 15.222316647436292 20.571675735318436 42.12272833146581 22.08327928577946 3 18.418109191497656 26.45155252251704 30.13729010690499 24.993048179080315 4 12.885854501554736 17.817028413996532 38.752557508314325 30.54455957613441 5 13.524734981296143 37.565755517482366 35.44504295900093 13.464466542220569 6 30.185704395923878 37.91552805491278 18.423186761881407 13.475580787281935 7 26.773156899367574 32.876580272161334 22.9546207780736 17.395642050397488 8 24.276280560215994 37.36073116767333 20.79748287000106 17.56550540210962 9 25.80095777410989 17.1152220971533 21.477874489231315 35.6059456395055 10-11 24.412321355566778 27.034273132857678 28.63931410107409 19.91409141050146 12-13 25.200824360309205 24.666623821634566 28.836450113957625 21.296101704098604 14-15 22.423821259282732 26.004766822558473 26.701577158468996 24.869834759689798 16-17 21.705895280955907 28.978642064236116 27.473978093209993 21.841484561597984 18-19 21.686779203678167 28.04568953567166 29.356665424317104 20.910865836333073 20-21 22.72420750918726 27.153852784558723 29.22661082674476 20.89532887950926 22-23 22.39869064876454 26.946909349358926 29.12480237756792 21.529597624308614 24-25 22.028725473171306 27.168844890620214 29.30191093605482 21.50051870015366 26-27 21.892505995435926 27.27503082034738 29.236652522564345 21.595810661652358 28-29 21.850883631969367 27.32146636847955 29.31837374607576 21.509276253475328 30-31 22.176172700608323 27.226527203333706 29.132788231333155 21.464511864724813 32-33 21.89300491024333 27.425128757904044 29.07531731461692 21.60654901723571 34-35 22.06070662244231 27.392261935402047 29.120631066426306 21.426400375729337 36-37 22.08492218075043 27.19707864894938 29.08672738659705 21.63127178370314 38-39 21.847313816510855 27.460039523743202 29.179242185589295 21.51340447415665 40-41 22.123000575022665 27.32296041088038 29.06294824705531 21.491090767041644 42-43 22.06566810913022 27.400692107738394 28.780378799718836 21.753260983412552 44-45 22.05948223453162 27.567327206776564 28.68032735182885 21.69286320686296 46-47 22.17638719643521 27.507000695464335 28.417622953387017 21.89898915471343 48-49 22.132951951277246 27.589455690539904 28.36519220893331 21.91240014924954 50-51 22.08879833972085 27.741086368392644 28.226569215499104 21.943546076387406 52-53 22.276814378020756 27.682664927216777 28.115904014782767 21.924616679979696 54-55 22.31068384942974 27.613839805125938 28.09201901594896 21.98345732949536 56-57 22.222264962436135 27.76339171153954 28.082621991291774 21.931721334732547 58-59 22.183379842713734 27.746608988445686 28.148324838644847 21.921686330195737 60-61 22.262029684099343 27.796486952114453 28.12289039307634 21.818592970709872 62-63 22.20603703845319 27.834171312505806 28.149131688447675 21.81065996059333 64-65 22.20753760557961 27.759992019820164 28.13041215321674 21.902058221383488 66-67 22.35401186422232 27.945912817722967 27.839385396992945 21.86068992106177 68-69 22.278799672924517 27.841572258939934 28.046563044686636 21.833065023448917 70-71 22.299895899144573 27.468954748429248 28.204492771545514 22.02665658088067 72-73 22.37148454965724 27.661434252451638 28.021097259826284 21.94598393806484 74-75 22.086347792556165 27.78908013266847 28.048312512287637 22.076259562487728 76-77 22.24706586169021 27.652416006074226 28.05239312330831 22.04812500892725 78-79 22.255377617606975 27.671498855893145 27.95701763979011 22.116105886709768 80-81 22.241021291356468 27.723362936670004 27.869753634189713 22.16586213778381 82-83 22.357356016629446 27.602492432687903 28.0064807699477 22.03367078073495 84-85 22.41813891103814 27.583803027950317 27.858722304472778 22.139335756538767 86-87 22.216733579676525 27.71191791081663 27.976756444408164 22.094592065098684 88-89 22.35010428674409 27.67017898519232 27.90182445211246 22.077892275951132 90-91 22.368915865331974 27.710911705853913 27.90679410300009 22.013378325814017 92-93 22.415012339344006 27.720834528016702 27.833497756867292 22.030655375771996 94-95 22.237264834486727 27.728155923531634 27.89655901389279 22.138020228088852 96-97 22.383347633529834 27.839876817192195 27.937054584773424 21.83972096450455 98-99 23.415819506490724 29.718271731029393 28.11137064244938 18.75453812003051 100 29.889046790963114 40.71018949831537 29.400763710721513 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1894.0 1 1730.5 2 2002.5 3 2667.0 4 3551.5 5 5181.0 6 6580.5 7 8059.0 8 9795.0 9 10810.0 10 10987.0 11 11172.5 12 12472.0 13 15544.5 14 22083.5 15 30049.5 16 35708.0 17 38287.5 18 37822.0 19 35141.5 20 31627.5 21 28762.0 22 28995.0 23 32902.5 24 40354.5 25 52232.0 26 69967.0 27 89195.5 28 105337.0 29 124114.0 30 142243.5 31 159038.5 32 183767.5 33 212362.0 34 236367.0 35 259517.5 36 287102.5 37 307122.5 38 318977.5 39 328045.0 40 338797.5 41 347209.5 42 348242.0 43 352457.0 44 359530.0 45 363370.0 46 361474.5 47 359947.0 48 359317.0 49 355902.0 50 349256.0 51 338626.5 52 323952.0 53 306123.0 54 286746.5 55 266432.0 56 244158.5 57 221119.0 58 197752.0 59 171608.0 60 144905.5 61 116980.5 62 90528.0 63 69298.0 64 51976.0 65 38494.0 66 28008.0 67 21061.0 68 15798.0 69 11599.0 70 8561.0 71 6031.0 72 4195.0 73 2885.5 74 1974.0 75 1291.5 76 831.0 77 555.5 78 367.5 79 222.0 80 143.0 81 99.5 82 77.5 83 51.5 84 32.5 85 23.0 86 17.5 87 12.0 88 7.5 89 7.0 90 6.0 91 4.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004831793765907098 3 0.0036473006339735616 4 0.0 5 3.518296431485751E-5 6 2.6973605974724087E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.1082619361656836E-4 26-27 0.0021760586275944294 28-29 0.008519800291656469 30-31 0.002778677568012099 32-33 0.005760002600835531 34-35 0.0031971667311221784 36-37 0.0012115727288994958 38-39 2.3930572622707006E-5 40-41 6.030648358020295E-5 42-43 0.00261386115984071 44-45 6.135845659429151E-4 46-47 3.6593459074247506E-4 48-49 0.0018931664839322195 50-51 4.7490596861821365E-4 52-53 0.0 54-55 0.0053994008406809055 56-57 0.05206523023974638 58-59 0.07635102667637449 60-61 0.0376991654494433 62-63 0.016239291776065205 64-65 0.0016489385416176819 66-67 0.0 68-69 0.002350661080090629 70-71 0.004496034511588967 72-73 0.015986880261032985 74-75 0.019333828113020528 76-77 0.025624160328522758 78-79 0.007216847113514185 80-81 0.008945834051289101 82-83 0.03627505931888843 84-85 0.02092751761114438 86-87 0.015633268425294077 88-89 0.007855990515563767 90-91 5.514038782125282E-5 92-93 0.0 94-95 0.0 96-97 4.1100375419049156E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 58.0 20-21 302.0 22-23 674.0 24-25 855.0 26-27 2364.0 28-29 6499.0 30-31 20509.0 32-33 26792.0 34-35 36604.0 36-37 57521.0 38-39 67833.0 40-41 64400.0 42-43 72596.0 44-45 85947.0 46-47 87040.0 48-49 81696.0 50-51 74501.0 52-53 71026.0 54-55 76712.0 56-57 79319.0 58-59 78220.0 60-61 75445.0 62-63 72956.0 64-65 75997.0 66-67 80007.0 68-69 81770.0 70-71 80757.0 72-73 74928.0 74-75 76110.0 76-77 79605.0 78-79 82175.0 80-81 81746.0 82-83 75580.0 84-85 74153.0 86-87 76251.0 88-89 80074.0 90-91 80937.0 92-93 78776.0 94-95 88536.0 96-97 248821.0 98-99 1868985.0 100-101 4001777.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.41720506893502 #Duplication Level Percentage of deduplicated Percentage of total 1 90.3157564304725 77.14519487977657 2 6.749240504098012 11.530025203962042 3 1.6232673324238007 4.159648758460406 4 0.5915984875232195 2.0213075730897057 5 0.2704556004560924 1.15507807431 6 0.15470614337155297 0.79287398242752 7 0.07644061900641243 0.45705408204869435 8 0.053874999670973256 0.3681481515987463 9 0.03650959944383553 0.2806693148410898 >10 0.12410471907484218 1.6850623014168693 >50 0.0030521385596578004 0.17476172985401014 >100 8.791475415592921E-4 0.1286581492617269 >500 6.856713432119248E-5 0.03881112863637075 >1k 4.571122320309085E-5 0.06270667031622076 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.172765477161917E-5 1.172765477161917E-5 2 0.0 0.0 0.0 2.345530954323834E-5 1.172765477161917E-5 3 0.0 0.0 0.0 3.518296431485751E-5 1.172765477161917E-5 4 0.0 2.345530954323834E-5 0.0 3.518296431485751E-5 2.345530954323834E-5 5 0.0 2.345530954323834E-5 0.0 3.518296431485751E-5 2.345530954323834E-5 6 0.0 2.345530954323834E-5 0.0 3.518296431485751E-5 4.691061908647668E-5 7 0.0 2.345530954323834E-5 0.0 3.518296431485751E-5 4.691061908647668E-5 8 0.0 2.345530954323834E-5 0.0 4.691061908647668E-5 5.8638273858095845E-5 9 0.0 8.209358340133419E-5 0.0 1.0554889294457252E-4 5.8638273858095845E-5 10-11 0.0 8.209358340133419E-5 0.0 1.114127203303821E-4 6.450210124390543E-5 12-13 0.0 8.209358340133419E-5 0.0 1.1727654771619169E-4 7.036592862971502E-5 14-15 0.0 1.4073185725943003E-4 0.0 1.1727654771619169E-4 1.0554889294457252E-4 16-17 0.0 1.524595120310492E-4 0.0 1.2900420248781086E-4 1.1727654771619169E-4 18-19 0.0 1.583233394168588E-4 0.0 1.4073185725943003E-4 1.7005099418847795E-4 20-21 0.0 1.6418716680266838E-4 0.0 1.4073185725943003E-4 1.8764247634590672E-4 22-23 0.0 1.7591482157428755E-4 0.0 1.465956846452396E-4 2.0523395850333546E-4 24-25 0.0 1.935063037317163E-4 0.0 1.524595120310492E-4 2.228254406607642E-4 26-27 0.0 1.9937013111752586E-4 0.0 1.993701311175259E-4 2.228254406607642E-4 28-29 0.0 1.9937013111752586E-4 0.0 4.92561500408005E-4 2.2868926804657378E-4 30-31 0.0 2.580084049756217E-4 0.0 0.0015070036381530632 2.4041692281819298E-4 32-33 0.0 2.580084049756217E-4 0.0 0.0036473006339735616 2.462807502040026E-4 34-35 0.0 3.1664667883371755E-4 0.0 0.006514712225634449 2.462807502040026E-4 36-37 0.0 3.6355729792019424E-4 0.0 0.010947765729306495 2.462807502040026E-4 38-39 0.0 3.7528495269181344E-4 0.0 0.017872945871947613 2.7559988713305047E-4 40-41 0.0 4.163317443924805E-4 0.0 0.025185138622052166 2.8146371451886007E-4 42-43 0.0 4.2805939916409967E-4 0.0 0.031963723080048044 2.8732754190466967E-4 44-45 0.0 4.51514708707338E-4 0.0 0.03910586483596412 2.931913692904792E-4 46-47 0.0 4.7497001825057636E-4 0.0 0.04716276366406649 2.931913692904792E-4 48-49 0.0 4.8669767302219556E-4 0.0 0.05498510939673648 2.931913692904792E-4 50-51 0.0 5.336082921086722E-4 0.0 0.06277813599247742 2.931913692904792E-4 52-53 0.0 5.570636016519106E-4 0.0 0.07059461789776159 3.049190240620984E-4 54-55 0.0 5.746550838093393E-4 0.0 0.07848732955906129 3.049190240620984E-4 56-57 0.0 5.863827385809584E-4 0.0 0.08604580305936985 3.2251050621952715E-4 58-59 0.0 5.863827385809584E-4 0.0 0.0941554763339445 3.401019883769559E-4 60-61 0.0 6.157018755100065E-4 0.0 0.10142075846496257 3.518296431485751E-4 62-63 0.0 6.274295302816256E-4 0.0 0.10843389601839085 3.518296431485751E-4 64-65 0.0 7.388422506120077E-4 0.0 0.11477855724983682 3.518296431485751E-4 66-67 0.0 7.388422506120077E-4 0.0 0.12163337146384821 3.5769347053438464E-4 68-69 0.0 7.505699053836268E-4 0.0 0.12830640702889953 3.6355729792019424E-4 70-71 0.0 7.681613875410555E-4 0.0 0.13448688109354284 3.8114878007762304E-4 72-73 0.0 7.740252149268652E-4 0.0 0.13893752607937232 4.573785360931476E-4 74-75 0.0 7.916166970842939E-4 0.0 0.1424206395465432 4.573785360931476E-4 76-77 0.0 8.502549709423898E-4 0.0 0.1458392509124702 4.573785360931476E-4 78-79 0.0 8.795741078714377E-4 0.0 0.14807336914646363 4.573785360931476E-4 80-81 0.0 8.795741078714377E-4 0.0 0.14875943695060334 4.6910619086476676E-4 82-83 0.0 8.795741078714377E-4 0.0 0.14931650055225526 4.925615004080052E-4 84-85 0.0 8.795741078714377E-4 0.0 0.14953932599291603 4.925615004080052E-4 86-87 0.0 8.795741078714377E-4 0.0 0.1496448748858606 4.984253277938147E-4 88 0.0 8.795741078714377E-4 0.0 0.1496566025406322 5.042891551796242E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12945 0.0 52.706295 1 GTATCAA 23770 0.0 36.99254 1 TCAACGC 29245 0.0 29.722418 4 ATCAACG 29340 0.0 29.640787 3 TATCAAC 29835 0.0 29.20612 2 CAACGCA 29815 0.0 29.154188 5 AACGCAG 30890 0.0 28.193762 6 ACGCAGA 35310 0.0 24.640858 7 CGCAGAG 35965 0.0 24.192097 8 TGGTATC 5550 0.0 23.290354 2 GTGGTAT 6085 0.0 22.342583 1 GCAGAGT 41330 0.0 21.142836 9 GAGTACT 23125 0.0 19.807178 12-13 GTACATG 32440 0.0 19.587885 1 TACATGG 31935 0.0 19.543959 2 CAGAGTA 40240 0.0 19.272675 10-11 ACATGGG 32265 0.0 18.747007 3 GTACTTT 24985 0.0 18.26567 14-15 AGAGTAC 38380 0.0 17.743515 10-11 AGTACTT 25355 0.0 16.679298 12-13 >>END_MODULE