##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139601_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6569957 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.216504765556305 32.0 25.0 33.0 18.0 33.0 2 29.56592988355936 31.0 27.0 33.0 25.0 33.0 3 32.003144465024654 33.0 31.0 33.0 29.0 34.0 4 31.863499867655147 33.0 31.0 33.0 29.0 34.0 5 32.86195267335844 33.0 33.0 34.0 32.0 34.0 6 36.85996879431631 38.0 37.0 38.0 35.0 38.0 7 37.02815710970407 38.0 38.0 38.0 35.0 38.0 8 37.15324544742074 38.0 38.0 38.0 36.0 38.0 9 37.228915044649455 38.0 38.0 38.0 36.0 38.0 10-11 37.344733078161696 38.0 38.0 38.0 36.5 38.0 12-13 37.40157804685784 38.0 38.0 38.0 37.0 38.0 14-15 37.409277945045915 38.0 38.0 38.0 37.0 38.0 16-17 37.46572298722808 38.0 38.0 38.0 37.0 38.0 18-19 37.45422306416922 38.0 38.0 38.0 37.0 38.0 20-21 37.469196834774195 38.0 38.0 38.0 37.0 38.0 22-23 37.47462841635816 38.0 38.0 38.0 37.0 38.0 24-25 37.48796797719248 38.0 38.0 38.0 37.0 38.0 26-27 37.448308639708856 38.0 38.0 38.0 37.0 38.0 28-29 37.417207929493586 38.0 38.0 38.0 37.0 38.0 30-31 37.43204312584504 38.0 38.0 38.0 37.0 38.0 32-33 37.42311284791441 38.0 38.0 38.0 37.0 38.0 34-35 37.38993575916487 38.0 38.0 38.0 37.0 38.0 36-37 37.36589834424211 38.0 38.0 38.0 37.0 38.0 38-39 37.36712059902996 38.0 38.0 38.0 37.0 38.0 40-41 37.36649174096931 38.0 38.0 38.0 37.0 38.0 42-43 37.32646116226875 38.0 38.0 38.0 37.0 38.0 44-45 37.28556886368689 38.0 38.0 38.0 37.0 38.0 46-47 37.25112727242591 38.0 38.0 38.0 37.0 38.0 48-49 37.18893799535918 38.0 38.0 38.0 37.0 38.0 50-51 37.144903306264425 38.0 38.0 38.0 37.0 38.0 52-53 37.13387761059528 38.0 38.0 38.0 37.0 38.0 54-55 37.12127565382716 38.0 38.0 38.0 36.5 38.0 56-57 37.07751485241572 38.0 38.0 38.0 36.0 38.0 58-59 37.0641318047636 38.0 38.0 38.0 36.0 38.0 60-61 37.089422604307515 38.0 38.0 38.0 36.0 38.0 62-63 37.10495043332148 38.0 38.0 38.0 36.0 38.0 64-65 37.11826975976339 38.0 38.0 38.0 36.0 38.0 66-67 37.12228003100935 38.0 38.0 38.0 36.0 38.0 68-69 37.1189409758002 38.0 38.0 38.0 36.0 38.0 70-71 37.11850085262829 38.0 38.0 38.0 36.0 38.0 72-73 37.120432284509135 38.0 38.0 38.0 36.0 38.0 74-75 37.1113534566515 38.0 38.0 38.0 36.0 38.0 76-77 37.09938622215071 38.0 38.0 38.0 36.0 38.0 78-79 37.10802970990663 38.0 38.0 38.0 36.0 38.0 80-81 37.11198085815695 38.0 38.0 38.0 36.0 38.0 82-83 37.07405454810572 38.0 38.0 38.0 36.0 38.0 84-85 37.063834441945644 38.0 38.0 38.0 36.0 38.0 86-87 37.07021517329206 38.0 38.0 38.0 36.0 38.0 88-89 37.06173016726171 38.0 38.0 38.0 36.0 38.0 90-91 37.043709093869836 38.0 38.0 38.0 36.0 38.0 92-93 37.039368214583234 38.0 38.0 38.0 36.0 38.0 94-95 37.02551185915359 38.0 38.0 38.0 36.0 38.0 96-97 37.00684575605678 38.0 38.0 38.0 36.0 38.0 98-99 36.97604698781221 38.0 38.0 38.0 35.5 38.0 100 35.683421773165755 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 7.0 20 30.0 21 88.0 22 287.0 23 903.0 24 2430.0 25 5019.0 26 9217.0 27 15869.0 28 26127.0 29 39265.0 30 52694.0 31 65954.0 32 84186.0 33 111894.0 34 166940.0 35 308887.0 36 959193.0 37 4720964.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.06249097216313 21.75478469645996 14.454691255970168 22.728033075406735 2 14.838661950413584 21.054894786945123 42.53532395014508 21.571119312496215 3 18.100418844390106 27.303275029175417 30.676892535978954 23.91941359045552 4 12.627464685080891 18.390439998313536 39.31450388488083 29.667591431724745 5 13.055540419308873 38.066217815223666 35.706292616356215 13.171949149111242 6 29.130025010898127 38.52402824015333 18.919849447544085 13.426097301404457 7 25.972163896963103 33.71551746837917 23.283074759850024 17.029243874807705 8 23.980065622956133 37.46546590791994 21.156531161467267 17.397937307656655 9 25.678098045390556 17.40242744358905 21.903826767815985 35.01564774320441 10-11 23.88397671400285 27.549023532421902 28.869374639742695 19.697625113832558 12-13 24.901707880279886 25.26536322840469 29.230708815902446 20.602220075412976 14-15 22.05319608636708 26.518369907139423 27.305186320093117 24.123247686400383 16-17 20.98821955760137 29.716450198989126 28.064978203053688 21.23035204035582 18-19 20.949490232584473 28.53563577356747 30.28442956323763 20.23044443061043 20-21 22.04935944864805 27.511736503230573 30.222194080354807 20.21670996776657 22-23 21.80064058577584 27.41422172268317 30.085840685873077 20.699297005667916 24-25 21.35666942376284 27.631865475830473 30.23738605666415 20.774079043742535 26-27 21.24286137437827 27.733901680307564 30.203887651036947 20.819349294277217 28-29 21.127727278854817 27.770591934505934 30.25907192720661 20.842608859432644 30-31 21.400039619705723 27.685497006943212 30.14204838758625 20.772414985764815 32-33 21.166295698721278 27.81542500388933 30.115854378740497 20.90242491864889 34-35 21.34866230266849 27.826525472654385 30.109424183292223 20.7153880413849 36-37 21.320545517331933 27.70906945038641 30.071207699828385 20.899177332453274 38-39 21.17076576956192 27.85311193038367 30.163364742808785 20.81275755724562 40-41 21.387505142234158 27.761636169257525 30.041765824809662 20.809092863698652 42-43 21.3557106758859 27.826123953198255 29.777051712471824 21.04111365844402 44-45 21.373997553751394 28.001066109127297 29.586473039059797 21.038463298061508 46-47 21.508422555380918 28.016981737836744 29.29003171279651 21.18456399398583 48-49 21.498864619994098 28.11522843715309 29.178019108290638 21.20788783456217 50-51 21.4757126108619 28.253837262118164 29.01318132944923 21.257268797570706 52-53 21.604063670534988 28.2665770265494 28.89725611279556 21.232103190120057 54-55 21.628944137373708 28.265751285125447 28.846865354844365 21.258439222656484 56-57 21.615861094532935 28.37038290710099 28.7311607933262 21.28259520503988 58-59 21.548298635270218 28.331896972768266 28.885521133882385 21.23428325807913 60-61 21.648288609191344 28.44115620911312 28.799966521550065 21.110588660145474 62-63 21.54615430930612 28.48518453952458 28.868304373121507 21.10035677804779 64-65 21.564954641654086 28.441449419891025 28.821185077555437 21.17241086089945 66-67 21.64644501105091 28.548709565438056 28.64321082689944 21.161634596611588 68-69 21.641605115680658 28.398496740865347 28.78283633307756 21.177061810376436 70-71 21.625561983511155 28.098201039687225 28.944137605974262 21.332099370827358 72-73 21.735759269781745 28.23960823592077 28.797987988232705 21.22664450606478 74-75 21.53115392379482 28.37680766987968 28.759923388091973 21.33211501823353 76-77 21.616780220389092 28.193115362594472 28.80720050728608 21.382903909730356 78-79 21.573494682208292 28.192223039949145 28.72889067983652 21.505391598006042 80-81 21.57527950592713 28.288731258285782 28.656552536009972 21.479436699777118 82-83 21.70251969265577 28.18203551657415 28.718385880504414 21.39705891026566 84-85 21.764791580584546 28.197901610065035 28.59194266396375 21.44536414538667 86-87 21.56388021766862 28.265519734782902 28.709634221787006 21.460965825761477 88-89 21.69245576744878 28.215527732225926 28.62361507960316 21.468401420722135 90-91 21.762068877981168 28.23699206632086 28.57645554149151 21.424483514206468 92-93 21.77020367284383 28.275429833126687 28.53828510016372 21.416081393865767 94-95 21.626822810858126 28.293547379842455 28.584834874594172 21.49479493470525 96-97 21.737508489736832 28.426887727937917 28.602765227029277 21.232838555295974 98-99 22.744031191010965 30.32310195376691 28.829471344201224 18.103395511020906 100 28.668364227911848 41.10622752846826 30.2254082436199 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1980.0 1 1672.0 2 1692.0 3 2224.0 4 2960.5 5 4183.0 6 5252.0 7 6746.5 8 8547.0 9 9663.0 10 10006.0 11 10352.5 12 11642.0 13 14719.5 14 20953.5 15 28085.5 16 33411.0 17 36197.0 18 35898.0 19 33485.5 20 30418.5 21 27851.5 22 27541.0 23 31063.5 24 38087.5 25 48259.0 26 62156.5 27 77689.5 28 93727.5 29 111901.5 30 129757.5 31 146791.0 32 167035.5 33 187919.0 34 206065.5 35 223717.0 36 243159.0 37 257512.0 38 266662.5 39 273628.5 40 278571.0 41 281702.5 42 282432.5 43 284387.5 44 286631.0 45 287317.5 46 282524.0 47 275835.0 48 269979.5 49 260900.5 50 250721.0 51 238726.5 52 224132.0 53 208525.5 54 190857.0 55 172750.0 56 154337.0 57 136217.0 58 119699.0 59 102647.5 60 85879.5 61 69551.5 62 53939.0 63 41581.0 64 32101.0 65 24106.5 66 17439.0 67 13052.5 68 9960.0 69 7351.0 70 5367.0 71 3792.5 72 2658.0 73 1864.5 74 1331.0 75 953.0 76 645.5 77 394.0 78 257.0 79 177.0 80 118.5 81 78.5 82 49.0 83 33.5 84 29.5 85 25.5 86 17.0 87 10.0 88 4.5 89 3.0 90 4.0 91 3.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005098967923229939 3 0.0032572511509588267 4 0.0 5 4.566239931250692E-5 6 3.1963679518754844E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.4356362197677607E-4 26-27 0.002002075154704077 28-29 0.00784402543809834 30-31 0.0025695723141316643 32-33 0.005343487641636823 34-35 0.0029532595662789306 36-37 0.001141049526560819 38-39 3.8836248511600775E-5 40-41 3.914908370395119E-5 42-43 0.0026679451754631767 44-45 6.296507980584757E-4 46-47 3.546648952767261E-4 48-49 0.0017931020992335302 50-51 5.271021513262508E-4 52-53 0.0 54-55 0.005094581706725158 56-57 0.05018017123495877 58-59 0.07404298795336012 60-61 0.037034377793438766 62-63 0.01599504398637096 64-65 0.0017501476797593916 66-67 0.0 68-69 0.00232325015645779 70-71 0.0046756379134759935 72-73 0.016036330250629695 74-75 0.019555506794204643 76-77 0.02563240162820197 78-79 0.007332166001388415 80-81 0.008686637651032239 82-83 0.03627959263087971 84-85 0.021117667464146943 86-87 0.01589391875531704 88-89 0.008219539730219836 90-91 9.287355420384403E-5 92-93 0.0 94-95 0.0 96-97 5.3877406057199705E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 216.0 22-23 464.0 24-25 763.0 26-27 1926.0 28-29 5297.0 30-31 15862.0 32-33 20845.0 34-35 28764.0 36-37 45365.0 38-39 52209.0 40-41 50197.0 42-43 57801.0 44-45 69304.0 46-47 69628.0 48-49 65436.0 50-51 58705.0 52-53 55332.0 54-55 59849.0 56-57 61848.0 58-59 61877.0 60-61 59683.0 62-63 57453.0 64-65 59837.0 66-67 63899.0 68-69 65941.0 70-71 66178.0 72-73 59408.0 74-75 59801.0 76-77 63099.0 78-79 65009.0 80-81 64400.0 82-83 60027.0 84-85 58225.0 86-87 60626.0 88-89 63214.0 90-91 63370.0 92-93 61507.0 94-95 67961.0 96-97 186806.0 98-99 1393439.0 100-101 3088352.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.04897792930937 #Duplication Level Percentage of deduplicated Percentage of total 1 91.35037902386922 80.43307506506707 2 6.398287948435409 11.267254287143109 3 1.3626403439624366 3.599372687134053 4 0.4354945384470771 1.5337939601624584 5 0.18414536528272063 0.810690560178144 6 0.09515541212463734 0.5027002069209918 7 0.05267734809856946 0.32467306620738423 8 0.030151493475002122 0.21238465468129422 9 0.022441397697211103 0.17783479174901354 >10 0.06655292584598747 0.8764833165426693 >50 0.0012035342861238744 0.07145598019561139 >100 7.706322616443381E-4 0.1356492858418311 >500 1.0003621397510418E-4 0.05463213817635537 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.522079977083564E-5 0.0 0.0 0.0 3 0.0 1.522079977083564E-5 0.0 0.0 0.0 4 0.0 3.044159954167128E-5 0.0 0.0 1.522079977083564E-5 5 0.0 3.044159954167128E-5 0.0 0.0 1.522079977083564E-5 6 6.088319908334256E-5 3.044159954167128E-5 0.0 0.0 1.522079977083564E-5 7 6.088319908334256E-5 3.044159954167128E-5 0.0 0.0 1.522079977083564E-5 8 6.088319908334256E-5 4.566239931250691E-5 0.0 0.0 1.522079977083564E-5 9 6.088319908334256E-5 1.0654559839584948E-4 0.0 0.0 1.522079977083564E-5 10-11 7.610399885417819E-5 1.0654559839584948E-4 0.0 7.61039988541782E-6 1.522079977083564E-5 12-13 7.610399885417819E-5 1.0654559839584948E-4 0.0 1.522079977083564E-5 1.522079977083564E-5 14-15 7.610399885417819E-5 1.5220799770835638E-4 0.0 1.522079977083564E-5 4.566239931250691E-5 16-17 1.5220799770835638E-4 1.8264959725002765E-4 0.0 3.044159954167128E-5 4.566239931250691E-5 18-19 1.6742879747919201E-4 2.1309119679169893E-4 0.0 6.849359896876037E-5 6.849359896876037E-5 20-21 1.6742879747919201E-4 2.283119965625346E-4 0.0 8.371439873959601E-5 8.371439873959601E-5 22-23 1.6742879747919201E-4 2.283119965625346E-4 0.0 9.132479862501383E-5 1.0654559839584946E-4 24-25 1.7503919736460983E-4 2.359223964479524E-4 0.0 1.141559982812673E-4 1.4459759782293856E-4 26-27 1.8264959725002765E-4 2.4353279633337023E-4 0.0 1.5220799770835638E-4 1.5220799770835638E-4 28-29 1.8264959725002765E-4 2.51143196218788E-4 0.0 4.033511939271444E-4 1.5220799770835638E-4 30-31 1.8264959725002765E-4 3.0441599541671275E-4 0.0 0.001347040779718954 1.5220799770835638E-4 32-33 1.8264959725002765E-4 3.4246799484380185E-4 0.0 0.003660602344885971 1.5220799770835638E-4 34-35 1.8264959725002765E-4 4.185719936979801E-4 0.0 0.0066438790999697565 1.5220799770835638E-4 36-37 1.8264959725002765E-4 4.566239931250692E-4 0.0 0.011095963032939181 1.5220799770835638E-4 38-39 1.8264959725002765E-4 4.7945519278132264E-4 0.0 0.017092958142648423 1.5220799770835638E-4 40-41 1.978703970208633E-4 5.327279919792473E-4 0.0 0.02391187643998279 1.5220799770835638E-4 42-43 1.978703970208633E-4 5.47948791750083E-4 0.0 0.03000019634831704 1.598183975937742E-4 44-45 1.978703970208633E-4 6.088319908334255E-4 0.0 0.03723768663934939 1.8264959725002765E-4 46-47 2.054807969062811E-4 6.697151899167681E-4 0.0 0.04498507372270473 1.8264959725002765E-4 48-49 2.1309119679169895E-4 7.001567894584393E-4 0.0 0.052230174413622495 2.1309119679169895E-4 50-51 2.1309119679169895E-4 7.838711881980353E-4 0.0 0.0600460550959466 2.1309119679169895E-4 52-53 2.2070159667711677E-4 7.914815880834532E-4 0.0 0.06704762299053099 2.2070159667711677E-4 54-55 2.283119965625346E-4 7.914815880834532E-4 0.0 0.07385132048809452 2.283119965625346E-4 56-57 2.283119965625346E-4 8.143127877397067E-4 0.0 0.08086810918244974 2.51143196218788E-4 58-59 2.283119965625346E-4 8.295335875105423E-4 0.0 0.08797622267542998 2.739743958750415E-4 60-61 2.359223964479524E-4 8.675855869376315E-4 0.0 0.09516805056714983 2.739743958750415E-4 62-63 2.5875359610420584E-4 8.980271864793027E-4 0.0 0.10219244966139049 3.0441599541671275E-4 64-65 2.6636399598962366E-4 9.741311853334809E-4 0.0 0.10833404236892266 3.0441599541671275E-4 66-67 2.739743958750415E-4 9.969623849897342E-4 0.0 0.11470394707301737 3.0441599541671275E-4 68-69 2.739743958750415E-4 0.0010197935846459876 0.0 0.121035799777685 3.1202639530213057E-4 70-71 2.739743958750415E-4 0.0010350143844168234 0.0 0.12681209329071713 3.3485759495838403E-4 72-73 2.891951956458771E-4 0.001050235184187659 0.0 0.13148487882036367 3.3485759495838403E-4 74-75 3.1202639530213057E-4 0.0010882871836147483 0.0 0.1350769875662809 3.3485759495838403E-4 76-77 3.196367951875484E-4 0.0011111183832710017 0.0 0.1382961867178126 3.4246799484380185E-4 78-79 3.3485759495838403E-4 0.0011263391830418372 0.0 0.14060974828297962 3.5007839472921967E-4 80-81 3.3485759495838403E-4 0.0011491703826980908 0.0 0.14142406107071934 3.5007839472921967E-4 82-83 3.3485759495838403E-4 0.0011567807825835085 0.0 0.14207855546086529 3.652991945000553E-4 84-85 3.3485759495838403E-4 0.0011720015823543442 0.0 0.1423525298567403 3.652991945000553E-4 86-87 3.3485759495838403E-4 0.0011872223821251797 0.0 0.14249712745456325 3.652991945000553E-4 88 3.3485759495838403E-4 0.0012328847814376868 0.0 0.14249712745456325 3.652991945000553E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11665 0.0 52.769814 1 GTATCAA 21885 0.0 36.962036 1 ATCAACG 26605 0.0 29.90116 3 TCAACGC 26710 0.0 29.829836 4 TATCAAC 27000 0.0 29.588573 2 CAACGCA 27300 0.0 29.15457 5 TGGTATC 4900 0.0 28.465788 2 AACGCAG 28295 0.0 28.129341 6 GTGGTAT 5175 0.0 27.4373 1 ACGCAGA 32265 0.0 24.668207 7 CGCAGAG 32550 0.0 24.43939 8 GCAGAGT 36900 0.0 21.614908 9 GAGTACT 19875 0.0 20.327793 12-13 CAGAGTA 36825 0.0 19.079136 10-11 TACATGG 28410 0.0 18.697721 2 GTACATG 28935 0.0 18.618258 1 GTACTTT 21765 0.0 18.44783 14-15 ACATGGG 28510 0.0 18.13342 3 AGAGTAC 34755 0.0 17.716333 10-11 AGTACTT 21545 0.0 16.697643 12-13 >>END_MODULE