##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139600_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6810063 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.206924517438384 32.0 25.0 33.0 18.0 33.0 2 29.70221978856877 31.0 28.0 33.0 25.0 33.0 3 32.03285549634416 33.0 31.0 33.0 29.0 34.0 4 31.92337134032387 33.0 31.0 33.0 29.0 34.0 5 32.87246373491699 33.0 33.0 34.0 32.0 34.0 6 36.853421620328625 38.0 37.0 38.0 35.0 38.0 7 37.02174135540302 38.0 38.0 38.0 35.0 38.0 8 37.14676721786568 38.0 38.0 38.0 36.0 38.0 9 37.2248899900045 38.0 38.0 38.0 36.0 38.0 10-11 37.336427063890596 38.0 38.0 38.0 36.5 38.0 12-13 37.3938594253827 38.0 38.0 38.0 37.0 38.0 14-15 37.40055958366318 38.0 38.0 38.0 37.0 38.0 16-17 37.45335197339584 38.0 38.0 38.0 37.0 38.0 18-19 37.44169341752051 38.0 38.0 38.0 37.0 38.0 20-21 37.45587793962725 38.0 38.0 38.0 37.0 38.0 22-23 37.46271320209334 38.0 38.0 38.0 37.0 38.0 24-25 37.476248517665454 38.0 38.0 38.0 37.0 38.0 26-27 37.43775029101734 38.0 38.0 38.0 37.0 38.0 28-29 37.40714926605338 38.0 38.0 38.0 37.0 38.0 30-31 37.42252851497179 38.0 38.0 38.0 37.0 38.0 32-33 37.41306764651551 38.0 38.0 38.0 37.0 38.0 34-35 37.38265657665012 38.0 38.0 38.0 37.0 38.0 36-37 37.360466968981285 38.0 38.0 38.0 37.0 38.0 38-39 37.363446182956764 38.0 38.0 38.0 37.0 38.0 40-41 37.36565031366249 38.0 38.0 38.0 37.0 38.0 42-43 37.3311157886953 38.0 38.0 38.0 37.0 38.0 44-45 37.29462643515407 38.0 38.0 38.0 37.0 38.0 46-47 37.26927922505892 38.0 38.0 38.0 37.0 38.0 48-49 37.21439253025713 38.0 38.0 38.0 37.0 38.0 50-51 37.17274899382167 38.0 38.0 38.0 37.0 38.0 52-53 37.162592412353746 38.0 38.0 38.0 37.0 38.0 54-55 37.14959657476294 38.0 38.0 38.0 37.0 38.0 56-57 37.10524349934765 38.0 38.0 38.0 36.0 38.0 58-59 37.08902798233031 38.0 38.0 38.0 36.0 38.0 60-61 37.11462770549531 38.0 38.0 38.0 36.0 38.0 62-63 37.126990189619605 38.0 38.0 38.0 36.0 38.0 64-65 37.13598975250231 38.0 38.0 38.0 36.0 38.0 66-67 37.13830055808542 38.0 38.0 38.0 36.0 38.0 68-69 37.13232875898849 38.0 38.0 38.0 36.0 38.0 70-71 37.12833244955824 38.0 38.0 38.0 36.0 38.0 72-73 37.1285766105799 38.0 38.0 38.0 36.0 38.0 74-75 37.116454936927234 38.0 38.0 38.0 36.0 38.0 76-77 37.102573720814064 38.0 38.0 38.0 36.0 38.0 78-79 37.10935661982802 38.0 38.0 38.0 36.0 38.0 80-81 37.1114288421212 38.0 38.0 38.0 36.0 38.0 82-83 37.071196823723014 38.0 38.0 38.0 36.0 38.0 84-85 37.060295402800506 38.0 38.0 38.0 36.0 38.0 86-87 37.06042654740645 38.0 38.0 38.0 36.0 38.0 88-89 37.052781313337675 38.0 38.0 38.0 36.0 38.0 90-91 37.032060540239065 38.0 38.0 38.0 36.0 38.0 92-93 37.02661955060785 38.0 38.0 38.0 36.0 38.0 94-95 37.0120511384315 38.0 38.0 38.0 36.0 38.0 96-97 36.99196228200023 38.0 38.0 38.0 36.0 38.0 98-99 36.95955796051814 38.0 38.0 38.0 35.5 38.0 100 35.65440979206512 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 6.0 20 29.0 21 74.0 22 324.0 23 1108.0 24 2663.0 25 5396.0 26 9727.0 27 16230.0 28 26290.0 29 38844.0 30 52203.0 31 67149.0 32 86626.0 33 115645.0 34 173471.0 35 320940.0 36 986832.0 37 4906504.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.17841494271052 21.364192959742077 14.188326892130073 23.269065205417334 2 15.021608156721216 20.811689565629717 42.219631798595444 21.94707047905362 3 18.326185816256043 26.671937483259477 30.34972710014238 24.652149600342092 4 12.787106374786841 18.04040579360279 38.886600608540626 30.28588722306974 5 13.328076404613176 37.82438040193479 35.622417423635035 13.225125769817007 6 29.939741928170193 38.06163016322073 18.61653716673113 13.38209074187795 7 26.557302039643393 33.172116028882556 23.024794337438582 17.245787594035473 8 24.161156805744675 37.488581236326304 20.959717993798296 17.39054396413073 9 25.711538938773398 17.34290857514828 21.59264899605187 35.35290349002645 10-11 24.175987799231812 27.244762640228142 28.741863327842932 19.837386232697114 12-13 25.06600893413174 24.88413102786274 29.037675569227478 21.01218446877804 14-15 22.2124229981426 26.211982179900538 26.957959126075632 24.617635695881226 16-17 21.416505251126164 29.348634513366466 27.695624842237144 21.53923539327022 18-19 21.390932800474825 28.372285249049828 29.692838377559795 20.543943572915552 20-21 22.379544183511918 27.38280007850272 29.602851296164857 20.63480444182051 22-23 22.04695807939511 27.31001240461392 29.489865942939364 21.153163573051604 24-25 21.736159260897093 27.476981240590444 29.60958615506786 21.177273343444604 26-27 21.635694306818344 27.615036241729822 29.551169832450487 21.198099619001344 28-29 21.515450678024063 27.62533823317409 29.63160670621985 21.227604382582005 30-31 21.85352597918611 27.489968537963094 29.517144423114704 21.13936105973609 32-33 21.62428773216635 27.627018086050537 29.477668288991016 21.271025892792096 34-35 21.754714486955034 27.722042132730063 29.484751720244862 21.038491660070044 36-37 21.725707915273134 27.59817911557042 29.41288740245262 21.263225566703827 38-39 21.581056023008912 27.690837789469224 29.547784339935852 21.180321847586008 40-41 21.794326245948035 27.611235119805066 29.414485165596666 21.179953468650233 42-43 21.74260884894158 27.70292089992379 29.14802209917884 21.40644815195579 44-45 21.819508105695217 27.835605561424376 29.018694032259624 21.326192300620782 46-47 21.873521516799133 27.817807408493145 28.761340670651407 21.547330404056314 48-49 21.878216775326536 27.92524365795047 28.6888123396431 21.507727227079886 50-51 21.821379727032507 28.041140727352186 28.596203871682597 21.54127567393271 52-53 21.96188497708274 28.030024701597128 28.47125623271736 21.536834088602774 54-55 21.966182165669164 28.024688427299704 28.42438666197254 21.584742745058595 56-57 21.978899255154015 28.12067152066069 28.344575693381845 21.555853530803446 58-59 21.868895148842554 28.138538272344782 28.49866904798984 21.493897530822824 60-61 21.992477882454825 28.1914531434312 28.40353675041835 21.412532223695624 62-63 21.940787275838584 28.294955739156833 28.371943131644507 21.392313853360076 64-65 21.88256353624039 28.234902682923035 28.434052557510768 21.448481223325803 66-67 22.027151618602936 28.365726689058125 28.160788667584256 21.446333024754683 68-69 21.999869238561633 28.223992789292623 28.328826497276765 21.447311474868975 70-71 21.96659978235294 27.904633715548133 28.49255163875306 21.636214863345867 72-73 22.110173090664357 28.102635622032924 28.28046813321638 21.506723154086338 74-75 21.88679140809853 28.144216227531743 28.317437454687504 21.651554909682226 76-77 21.938209957921732 27.965434417495892 28.38104310765174 21.715312516930634 78-79 21.954552034636936 27.969071162174096 28.332930709228833 21.743446093960138 80-81 21.963396726676912 28.03774945958242 28.197781094323183 21.801072719417487 82-83 22.01781240000524 27.914420390604093 28.372174183153913 21.695593026236754 84-85 22.104382877541376 27.884969862720826 28.252614869553334 21.758032390184464 86-87 21.929099816178898 28.002161002947222 28.314323944176707 21.754415236697174 88-89 22.01008846745885 27.95425330055248 28.255017684876098 21.780640547112572 90-91 22.026319449706154 27.986908202251826 28.24411962502278 21.74265272301924 92-93 22.072725659432294 28.00862618359165 28.189631925216453 21.729016231759605 94-95 21.952088076838066 28.05397777956688 28.246758435485468 21.747175708109584 96-97 22.06142596157463 28.169737119716594 28.275566755367432 21.49327016334134 98-99 23.108135434821577 30.092431481504594 28.443733400010313 18.355699683663516 100 29.233710696178193 40.973643119505375 29.792646184316425 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1846.0 1 1620.5 2 1663.0 3 2082.5 4 2745.0 5 3949.5 6 5020.5 7 6326.5 8 7875.5 9 8866.0 10 9068.0 11 9178.5 12 10353.0 13 13140.0 14 18502.5 15 24710.0 16 29336.5 17 31718.5 18 31645.5 19 29715.0 20 27348.0 21 25754.5 22 26050.5 23 29478.0 24 36260.0 25 46131.5 26 59341.0 27 74542.0 28 89912.0 29 107241.0 30 124206.5 31 139517.5 32 157930.5 33 178059.5 34 195582.5 35 213722.0 36 233784.0 37 248515.0 38 258632.5 39 266723.5 40 274433.5 41 281057.0 42 285126.5 43 289834.0 44 294322.5 45 297943.5 46 296256.0 47 292481.5 48 288895.0 49 282124.5 50 273227.5 51 261410.0 52 247761.0 53 231689.0 54 213506.0 55 195425.5 56 176456.0 57 156835.5 58 137892.0 59 118579.0 60 99337.5 61 79789.5 62 62151.0 63 48318.5 64 36979.0 65 27880.5 66 20271.5 67 14892.0 68 11126.5 69 8164.0 70 6019.0 71 4389.5 72 3139.0 73 2169.5 74 1486.5 75 1000.5 76 648.0 77 391.5 78 260.0 79 179.5 80 120.5 81 82.0 82 62.0 83 46.5 84 29.0 85 18.5 86 14.0 87 12.5 88 7.5 89 2.5 90 2.0 91 2.0 92 1.5 93 1.5 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005374399620091621 3 0.003509512320223763 4 0.0 5 4.4052455902390334E-5 6 3.083671913167323E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 2.717023540365387E-4 26-27 0.0017993482833960326 28-29 0.00717819128829137 30-31 0.0025818638408865724 32-33 0.005264583670972074 34-35 0.0026851809523471366 36-37 0.0010925187216460734 38-39 1.496728600298328E-5 40-41 3.770405813302173E-5 42-43 0.002363045733444946 44-45 5.520359007347444E-4 46-47 4.1834096663568107E-4 48-49 0.002097672155288478 50-51 4.662846925690184E-4 52-53 0.0 54-55 0.005294695254480515 56-57 0.04961442780410085 58-59 0.0734178293618624 60-61 0.03653648392179153 62-63 0.014851044194162584 64-65 0.001639901612665721 66-67 0.0 68-69 0.002625524014433127 70-71 0.004080169832919229 72-73 0.015232386669364436 74-75 0.018626117567054026 76-77 0.024013158488651525 78-79 0.0066302998676405845 80-81 0.008974572383808171 82-83 0.03541016209922964 84-85 0.02079827152081993 86-87 0.015677919854741536 88-89 0.0069307790379555985 90-91 8.821694153432002E-5 92-93 0.0 94-95 0.0 96-97 5.111058705722515E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 58.0 20-21 304.0 22-23 630.0 24-25 770.0 26-27 1913.0 28-29 5330.0 30-31 15430.0 32-33 20031.0 34-35 27969.0 36-37 43413.0 38-39 51554.0 40-41 49076.0 42-43 56019.0 44-45 66275.0 46-47 67172.0 48-49 62758.0 50-51 58197.0 52-53 55002.0 54-55 59372.0 56-57 61292.0 58-59 61472.0 60-61 59238.0 62-63 57057.0 64-65 60321.0 66-67 63691.0 68-69 65899.0 70-71 65690.0 72-73 59649.0 74-75 60274.0 76-77 63114.0 78-79 64866.0 80-81 64895.0 82-83 60153.0 84-85 58955.0 86-87 61111.0 88-89 63678.0 90-91 64275.0 92-93 62275.0 94-95 69700.0 96-97 198321.0 98-99 1487428.0 100-101 3235436.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.77146205955077 #Duplication Level Percentage of deduplicated Percentage of total 1 90.63444302848497 78.644831345347 2 6.742091628314719 11.70042295856651 3 1.5415137389489615 4.012782027404582 4 0.5320919479101347 1.8468158508110688 5 0.21689268960073577 0.9410047893342084 6 0.11424951233291011 0.5948158334830372 7 0.0675821257331815 0.4104939901272384 8 0.040785961705095415 0.2831246022924782 9 0.02735141525557372 0.21359900620116298 >10 0.08055178227131576 1.086407989617177 >50 0.0017339550134779374 0.09941277044186254 >100 6.354217345036852E-4 0.11600226948479103 >500 7.679269446507095E-5 0.050286566888848284 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 1.4684151967463443E-5 0.0 0.0 0.0 2 0.0 4.405245590239033E-5 0.0 0.0 0.0 3 0.0 4.405245590239033E-5 0.0 2.9368303934926886E-5 0.0 4 0.0 7.342075983731722E-5 0.0 2.9368303934926886E-5 0.0 5 0.0 8.810491180478065E-5 0.0 2.9368303934926886E-5 0.0 6 0.0 8.810491180478065E-5 0.0 2.9368303934926886E-5 0.0 7 0.0 1.027890637722441E-4 0.0 2.9368303934926886E-5 0.0 8 0.0 1.32157367707171E-4 0.0 5.873660786985377E-5 0.0 9 0.0 2.349464314794151E-4 0.0 8.810491180478065E-5 0.0 10-11 0.0 2.569726594306102E-4 0.0 1.1747321573970754E-4 0.0 12-13 0.0 2.64314735414342E-4 0.0 1.32157367707171E-4 0.0 14-15 0.0 3.3039341926792746E-4 0.0 1.32157367707171E-4 0.0 16-17 0.0 3.377354952516592E-4 0.0 1.4684151967463445E-4 0.0 18-19 0.0 3.597617232028544E-4 0.0 1.4684151967463445E-4 0.0 20-21 0.0 3.8178795115404953E-4 0.0 1.6886774762582958E-4 0.0 22-23 0.0 4.331824830401716E-4 0.0 2.2026227951195166E-4 0.0 24-25 0.0 4.8457701492629363E-4 0.0 3.0836719131673235E-4 0.0 26-27 0.0 5.139453188612205E-4 0.0 3.671037991865861E-4 0.0 28-29 0.0 5.28629470828684E-4 0.0 5.873660786985377E-4 0.0 30-31 0.0 6.461026865683915E-4 0.0 0.0013215736770717098 0.0 32-33 0.0 6.681289145195866E-4 0.0 0.003347986648581665 0.0 34-35 0.0 8.002862822267577E-4 0.0 0.005983791926741353 0.0 36-37 0.0 9.544698778851239E-4 0.0 0.010117380705582314 0.0 38-39 0.0 9.838381818200507E-4 0.0 0.016482960583477715 0.0 40-41 0.0 0.001057258941657368 0.0 0.022995381981047752 0.0 42-43 1.4684151967463443E-5 0.0010646010176410996 0.0 0.029052594667626424 0.0 44-45 1.4684151967463443E-5 0.0011380217774784168 0.0 0.03612301383996007 0.0 46-47 1.4684151967463443E-5 0.0012334687652669292 0.0 0.04312735432844013 0.0 48-49 1.4684151967463443E-5 0.0012481529172343926 0.0 0.05031524671651349 0.0 50-51 1.4684151967463443E-5 0.0013876523609252954 0.0 0.057238824369172506 0.0 52-53 1.4684151967463443E-5 0.001394994436909027 0.0 0.06437532222535973 0.0 54-55 1.4684151967463443E-5 0.0014096785888764907 0.0 0.07132826818195367 0.0 56-57 1.4684151967463443E-5 0.0014390468928114175 0.0 0.07773055843976773 0.0 58-59 1.4684151967463443E-5 0.0014390468928114175 0.0 0.08519010763923916 0.0 60-61 1.4684151967463443E-5 0.0014390468928114175 0.0 0.09287726119420628 0.0 62-63 2.2026227951195164E-5 0.001453731044778881 0.0 0.09974944431497917 0.0 64-65 2.9368303934926886E-5 0.0015124676526487347 0.0 0.1060269192810698 0.0 66-67 2.9368303934926886E-5 0.0015418359565836615 0.0 0.11244389369085131 0.0 68-69 2.9368303934926886E-5 0.001556520108551125 0.0 0.11879478941677926 0.0 70-71 2.9368303934926886E-5 0.0015712042605185883 0.0 0.12482997587540673 0.0 72-73 2.9368303934926886E-5 0.001585888412486052 0.0 0.12925724769359698 0.0 74-75 2.9368303934926886E-5 0.0016225987924047105 0.0 0.13248776112643892 0.0 76-77 2.9368303934926886E-5 0.0017033616282257596 0.0 0.13629829856199568 0.0 78-79 2.9368303934926886E-5 0.0017474140841281498 0.0 0.13877257816851327 0.0 80-81 2.9368303934926886E-5 0.0017547561601118815 0.0 0.13960223275467495 0.0 82-83 2.9368303934926886E-5 0.001769440312079345 0.0 0.14019694090935722 0.0 84-85 2.9368303934926886E-5 0.0017767823880630767 0.0 0.14043922941682035 0.0 86-87 2.9368303934926886E-5 0.0018061506919980035 0.0 0.14056404470854383 0.0 88 2.9368303934926886E-5 0.0018648872998678573 0.0 0.14057138678452755 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10855 0.0 51.31474 1 GTATCAA 19350 0.0 35.16439 1 ATCAACG 23365 0.0 28.851053 3 TCAACGC 23675 0.0 28.489542 4 CAACGCA 23970 0.0 28.17394 5 TATCAAC 24295 0.0 27.955204 2 AACGCAG 24710 0.0 27.347193 6 GTGGTAT 4805 0.0 25.33411 1 TGGTATC 4660 0.0 24.86132 2 ACGCAGA 28610 0.0 23.633827 7 CGCAGAG 29095 0.0 23.25429 8 GCAGAGT 33455 0.0 20.324055 9 GAGTACT 18075 0.0 19.99315 12-13 GTACATG 26305 0.0 19.739332 1 TACATGG 26025 0.0 19.306541 2 CAGAGTA 32910 0.0 18.613697 10-11 ACATGGG 26335 0.0 18.48871 3 GTACTTT 20080 0.0 17.882189 14-15 AGAGTAC 31070 0.0 17.048042 10-11 CATGGGG 16635 0.0 16.803936 4 >>END_MODULE