##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139598_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7881754 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.66005523643595 18.0 18.0 30.0 18.0 32.0 2 25.716372015670622 27.0 25.0 29.0 18.0 31.0 3 29.00422367914553 29.0 27.0 31.0 25.0 33.0 4 27.37394024223542 29.0 27.0 31.0 15.0 33.0 5 30.958353813123324 32.0 31.0 33.0 29.0 33.0 6 35.65267959390765 37.0 35.0 38.0 31.0 38.0 7 36.17838656217893 38.0 36.0 38.0 33.0 38.0 8 36.444628061215816 38.0 37.0 38.0 34.0 38.0 9 36.77075369264253 38.0 37.0 38.0 34.0 38.0 10-11 37.03550136175272 38.0 38.0 38.0 35.5 38.0 12-13 37.16546190099311 38.0 38.0 38.0 36.0 38.0 14-15 37.21899199086904 38.0 38.0 38.0 36.0 38.0 16-17 37.38158714418136 38.0 38.0 38.0 36.5 38.0 18-19 37.4058995624578 38.0 38.0 38.0 37.0 38.0 20-21 37.454787277916054 38.0 38.0 38.0 37.0 38.0 22-23 37.474458064565 38.0 38.0 38.0 37.0 38.0 24-25 37.50081610737441 38.0 38.0 38.0 37.0 38.0 26-27 37.45790629203276 38.0 38.0 38.0 37.0 38.0 28-29 37.42574309554973 38.0 38.0 38.0 37.0 38.0 30-31 37.4498798463178 38.0 38.0 38.0 37.0 38.0 32-33 37.44434027030758 38.0 38.0 38.0 37.0 38.0 34-35 37.40832784676009 38.0 38.0 38.0 37.0 38.0 36-37 37.39055226029386 38.0 38.0 38.0 37.0 38.0 38-39 37.3944164494076 38.0 38.0 38.0 37.0 38.0 40-41 37.409236267109364 38.0 38.0 38.0 37.0 38.0 42-43 37.387076630962376 38.0 38.0 38.0 37.0 38.0 44-45 37.35820696056541 38.0 38.0 38.0 37.0 38.0 46-47 37.33481851245868 38.0 38.0 38.0 37.0 38.0 48-49 37.278626464545795 38.0 38.0 38.0 37.0 38.0 50-51 37.2036450033297 38.0 38.0 38.0 37.0 38.0 52-53 37.234272877046166 38.0 38.0 38.0 37.0 38.0 54-55 37.22806732171041 38.0 38.0 38.0 37.0 38.0 56-57 37.19034042336372 38.0 38.0 38.0 37.0 38.0 58-59 37.1856407878538 38.0 38.0 38.0 37.0 38.0 60-61 37.20877255764281 38.0 38.0 38.0 37.0 38.0 62-63 37.21568722942344 38.0 38.0 38.0 37.0 38.0 64-65 37.16372670431798 38.0 38.0 38.0 36.0 38.0 66-67 37.2107493384856 38.0 38.0 38.0 37.0 38.0 68-69 37.22775518005226 38.0 38.0 38.0 37.0 38.0 70-71 37.21679434994704 38.0 38.0 38.0 37.0 38.0 72-73 37.21384787938936 38.0 38.0 38.0 37.0 38.0 74-75 37.18242260205932 38.0 38.0 38.0 36.0 38.0 76-77 37.19418564518942 38.0 38.0 38.0 36.0 38.0 78-79 37.20124981900184 38.0 38.0 38.0 36.0 38.0 80-81 37.200787273520056 38.0 38.0 38.0 36.0 38.0 82-83 37.161913437191075 38.0 38.0 38.0 36.0 38.0 84-85 37.15614350630451 38.0 38.0 38.0 36.0 38.0 86-87 37.1306006771524 38.0 38.0 38.0 36.0 38.0 88-89 37.14509654181011 38.0 38.0 38.0 36.0 38.0 90-91 37.1392631182881 38.0 38.0 38.0 36.0 38.0 92-93 37.12383911001878 38.0 38.0 38.0 36.0 38.0 94-95 37.11694157778379 38.0 38.0 38.0 36.0 38.0 96-97 37.10415912629746 38.0 38.0 38.0 36.0 38.0 98-99 37.13182242655696 38.0 38.0 38.0 36.0 38.0 100 35.8394300857752 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 12.0 20 21.0 21 76.0 22 361.0 23 1039.0 24 2601.0 25 5486.0 26 10210.0 27 17293.0 28 28136.0 29 41782.0 30 57091.0 31 76394.0 32 103267.0 33 149509.0 34 254465.0 35 558184.0 36 1924736.0 37 4651090.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.547136335389304 25.93898515482721 14.184647224462982 20.3292312853205 2 15.54583673523764 21.565618214033545 40.31517652156316 22.57336852916566 3 18.25756459821198 26.970439427832716 30.238714304727633 24.53328166922767 4 12.92204306429956 18.410494929488365 38.14528983351284 30.52217217269923 5 13.41112650813512 37.92778866226985 35.42230574565002 13.23877908394502 6 29.817525388384365 37.864617444289685 18.59110294485212 13.726754222473831 7 26.4652743838537 33.058216138280265 23.02505337659286 17.451456101273173 8 24.308612017071326 37.22406205522273 21.066275349370205 17.401050578335735 9 25.583759655528453 17.284946980075755 21.57167046827394 35.55962289612185 10-11 24.19727893055277 27.146609752093255 28.621611382441014 20.034499934912965 12-13 24.97560187745012 24.77706738880711 28.957260021056225 21.290070712686543 14-15 22.204518182120374 26.195406504694258 26.490677075178954 25.109398238006413 16-17 21.516555832623045 29.42772636649152 27.362240689064897 21.693477111820542 18-19 21.57758285782581 28.41241302380155 29.164092155121818 20.845911963250817 20-21 22.535145148788878 27.360371931282085 29.088844231128146 21.015638688800887 22-23 22.37062611607964 27.344296977357523 28.918227793044416 21.366849113518416 24-25 21.979865761167098 27.5541849092245 29.017732435548567 21.448216894059836 26-27 21.853526844791013 27.630305266828657 29.068196088722758 21.447971799657573 28-29 21.661243005514596 27.422222896446417 29.25876941234104 21.65776468569794 30-31 21.949719475656526 27.383885108085703 29.168387925019506 21.498007491238262 32-33 21.703214997988315 27.745811036008316 29.006427143515047 21.54454682248832 34-35 21.83862173800688 27.655350725181087 29.17265112326651 21.333376413545516 36-37 21.939057713528463 27.457496846031926 28.97394688049043 21.62949855994918 38-39 21.759881892420086 27.55296760904265 29.147204497871854 21.539946000665413 40-41 21.859073807700018 27.381747864917482 29.157433185677718 21.601745141704782 42-43 21.887147242397656 27.475853482421105 28.879370327348912 21.75762894783233 44-45 21.82262397994851 27.58350730173153 28.81190745634473 21.781961261975226 46-47 22.04482927110464 27.523560523066447 28.521459036707164 21.910151169121747 48-49 21.949415335217605 27.657205189487854 28.455222531704987 21.938156943589554 50-51 21.91550204999151 27.780216820689517 28.39924049827752 21.90504063104145 52-53 22.05130527427953 27.711781329849494 28.434804349691213 21.802109046179766 54-55 22.00115881833529 27.766135665342944 28.261259636080442 21.971445880241323 56-57 22.028061879330032 27.9471078531358 28.13252660980473 21.892303657729435 58-59 21.876359993090052 28.000968849011436 28.30430485888703 21.818366299011483 60-61 22.02403908207067 28.20946443572403 28.063671769610142 21.70282471259516 62-63 21.933512594359588 28.289665458547436 28.107510135918584 21.669311811174392 64-65 21.953863178993394 28.180387477477424 28.062739216930876 21.803010126598306 66-67 22.04591771154186 28.140047923017413 27.995982412774318 21.818051952666412 68-69 21.94070021463925 28.038673262061153 28.17240041899462 21.84822610430498 70-71 22.052908617527052 27.783862099837176 28.25505679466821 21.908172487967565 72-73 22.098263580807597 27.888763828541265 28.04112228608446 21.971850304566683 74-75 21.934129544162865 27.98193936011518 28.09371095891855 21.9902201368034 76-77 22.112206062665003 27.759600095588944 28.114174079291775 22.01401976245428 78-79 22.01137866164926 27.68856960449225 28.119419273889513 22.180632459968972 80-81 22.08936039015245 27.886762676905924 27.936935153600178 22.086941779341448 82-83 22.149064440656765 27.735686728312626 28.07719523005566 22.03805360097495 84-85 22.070366957340298 27.826034197850774 28.026812915834252 22.07678592897468 86-87 22.062946967428648 27.85585963579493 28.07807356775817 22.003119829018253 88-89 22.137582599204343 27.749708473396435 28.053846265610733 22.05886266178849 90-91 22.21057871872477 27.76499221473141 28.0157307007072 22.008698365836622 92-93 22.18376861005585 27.798440424147312 27.975448216682192 22.04234274911465 94-95 22.05752350873417 27.77380424321681 28.057364529807998 22.111307718241026 96-97 22.27406899571241 27.80500555783109 28.034999275289373 21.885926171167124 98-99 23.237059382814877 29.77517943342967 28.286352918622182 18.70140826513327 100 22.166678978088335 30.551302863506745 22.286369385139015 24.99564877326591 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1960.0 1 1719.5 2 1691.0 3 2035.0 4 2560.5 5 3511.5 6 4416.5 7 5925.0 8 7679.5 9 8610.0 10 8811.0 11 9059.0 12 10233.5 13 12859.0 14 18145.0 15 24202.5 16 28381.0 17 29986.5 18 29332.0 19 27573.0 20 25361.5 21 23533.5 22 23876.0 23 27613.5 24 34642.5 25 44824.5 26 57747.5 27 72886.0 28 90570.5 29 111110.0 30 132929.0 31 154579.5 32 177596.0 33 201455.0 34 223597.5 35 244194.0 36 267208.0 37 287027.5 38 301398.0 39 313326.5 40 320441.0 41 323787.0 42 325401.0 43 334746.0 44 345840.0 45 349613.0 46 345396.0 47 335535.0 48 326156.0 49 317412.5 50 308807.5 51 298827.5 52 286785.5 53 270628.0 54 251326.5 55 231172.5 56 209186.0 57 185031.0 58 162557.5 59 141238.0 60 118200.0 61 96066.0 62 76279.5 63 59299.5 64 45866.0 65 34601.0 66 25219.5 67 18958.0 68 14621.0 69 10846.5 70 7759.5 71 5549.0 72 3904.5 73 2585.0 74 1689.0 75 1116.5 76 719.0 77 458.5 78 310.5 79 189.0 80 111.5 81 77.5 82 60.5 83 44.0 84 29.5 85 18.5 86 14.5 87 12.5 88 11.0 89 11.5 90 6.5 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0017635668405788863 3 9.26189779584595E-4 4 6.343765613593116E-5 5 0.0 6 0.0 7 2.791256869980971E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.16874210209215E-4 24-25 2.9818637968363564E-4 26-27 6.9795240434134E-5 28-29 0.002767345751733923 30-31 0.00192506148601913 32-33 0.0043612744802793355 34-35 0.008983460472390832 36-37 0.0014105060517441582 38-39 0.0 40-41 1.8180690742879255E-4 42-43 6.601696387590955E-4 44-45 9.882374705653469E-5 46-47 4.654158151219449E-5 48-49 0.00417307947770757 50-51 0.0032953060429213948 52-53 3.8873887584491885E-4 54-55 0.0028735888994223264 56-57 0.043688835630117835 58-59 0.06736647938594129 60-61 0.03269851831925661 62-63 0.011868057987972845 64-65 9.567147021369481E-4 66-67 1.8165285790081669E-4 68-69 0.0013736135593140659 70-71 0.011289985582242753 72-73 0.017769366243461347 74-75 0.011967594665911095 76-77 0.014072793651017393 78-79 0.003143263444496471 80-81 0.01489298028022281 82-83 0.047960071401416546 84-85 0.026092744562739544 86-87 0.0038435177941954484 88-89 1.632513664547501E-4 90-91 1.6511701595245027E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 44.0 20-21 188.0 22-23 447.0 24-25 610.0 26-27 1874.0 28-29 4992.0 30-31 15749.0 32-33 20458.0 34-35 28351.0 36-37 44468.0 38-39 51829.0 40-41 49897.0 42-43 57049.0 44-45 68094.0 46-47 68756.0 48-49 64652.0 50-51 59044.0 52-53 56899.0 54-55 62268.0 56-57 64599.0 58-59 64818.0 60-61 66344.0 62-63 63084.0 64-65 68117.0 66-67 73363.0 68-69 74343.0 70-71 77339.0 72-73 65085.0 74-75 65452.0 76-77 67771.0 78-79 69664.0 80-81 68788.0 82-83 64922.0 84-85 63817.0 86-87 66000.0 88-89 68722.0 90-91 69271.0 92-93 67650.0 94-95 76799.0 96-97 230431.0 98-99 498969.0 100-101 5130737.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.9384175180643 #Duplication Level Percentage of deduplicated Percentage of total 1 90.02203505505577 77.36351234387205 2 7.061395594757634 12.136903257650031 3 1.6473178079617974 4.247036566966902 4 0.6038660818435482 2.0758118186587375 5 0.2732592583939152 1.174173411926645 6 0.13703253398840715 0.7065815471672443 7 0.07988378228172617 0.4805560084254391 8 0.04968190570338131 0.3415667484344227 9 0.03417063303358601 0.2642913115647187 >10 0.09046809031272603 1.139769695163348 >50 7.484877022292792E-4 0.04265565456302053 >100 1.4076896529593267E-4 0.027141635607501862 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2687531227186234E-5 0.0 2 0.0 3.8062593681558696E-5 0.0 1.2687531227186234E-5 0.0 3 0.0 3.8062593681558696E-5 0.0 1.2687531227186234E-5 0.0 4 0.0 8.881271859030362E-5 0.0 2.5375062454372467E-5 0.0 5 0.0 8.881271859030362E-5 0.0 2.5375062454372467E-5 0.0 6 7.612518736311739E-5 8.881271859030362E-5 0.0 2.5375062454372467E-5 0.0 7 7.612518736311739E-5 8.881271859030362E-5 0.0 3.8062593681558696E-5 0.0 8 7.612518736311739E-5 1.0150024981748987E-4 0.0 5.0750124908744935E-5 0.0 9 7.612518736311739E-5 2.4106309331653844E-4 0.0 5.0750124908744935E-5 0.0 10-11 1.0150024981748987E-4 2.4106309331653844E-4 0.0 7.612518736311739E-5 0.0 12-13 1.0150024981748987E-4 2.4106309331653844E-4 0.0 8.881271859030362E-5 6.343765613593117E-6 14-15 1.0784401543108299E-4 2.9181321822528336E-4 0.0 1.2053154665826922E-4 2.5375062454372467E-5 16-17 1.7762543718060725E-4 2.9815698383887647E-4 0.0 1.3956284349904855E-4 2.5375062454372467E-5 18-19 1.7762543718060725E-4 3.2987581190684203E-4 0.0 1.5225037472623478E-4 2.5375062454372467E-5 20-21 1.7762543718060725E-4 3.6159463997480765E-4 0.0 1.903129684077935E-4 2.5375062454372467E-5 22-23 1.7762543718060725E-4 4.123447648835526E-4 0.0 2.347193277029453E-4 2.5375062454372467E-5 24-25 1.903129684077935E-4 4.504073585651113E-4 0.0 2.600943901573178E-4 2.5375062454372467E-5 26-27 1.903129684077935E-4 4.8212618663307687E-4 0.0 3.1718828067965583E-4 2.5375062454372467E-5 28-29 2.0300049963497974E-4 4.8212618663307687E-4 0.0 6.470640925864979E-4 2.5375062454372467E-5 30-31 2.1568803086216597E-4 5.392200771554148E-4 0.0 0.0015986289346254655 2.5375062454372467E-5 32-33 2.1568803086216597E-4 5.45563842769008E-4 0.0 0.0036222901653616695 2.5375062454372467E-5 34-35 2.2203179647575907E-4 6.914704518816497E-4 0.0 0.00651504728516013 2.5375062454372467E-5 36-37 2.283755620893522E-4 8.437208266078844E-4 0.0 0.010625807402768469 2.5375062454372467E-5 38-39 2.283755620893522E-4 8.69095889062257E-4 0.0 0.01646841553288773 3.8062593681558696E-5 40-41 2.5375062454372464E-4 9.388773108117812E-4 0.0 0.022659930771754613 3.8062593681558696E-5 42-43 2.5375062454372464E-4 9.642523732661537E-4 0.0 0.028692851870281665 3.8062593681558696E-5 44-45 2.600943901573178E-4 0.0010847839199244229 0.0 0.03577249429505158 3.8062593681558696E-5 46-47 2.664381557709109E-4 0.0011799404041283198 0.0 0.0433152316096138 3.8062593681558696E-5 48-49 2.664381557709109E-4 0.0011799404041283198 0.0 0.0508706564554032 3.8062593681558696E-5 50-51 2.664381557709109E-4 0.001459066091126417 0.0 0.058261143395239176 3.8062593681558696E-5 52-53 2.664381557709109E-4 0.001471753622353603 0.0 0.06495381611757992 3.8062593681558696E-5 54-55 2.664381557709109E-4 0.0014780973879671962 0.0 0.07158939494939832 3.8062593681558696E-5 56-57 2.664381557709109E-4 0.0014971286848079754 0.0 0.07840259921839732 3.8062593681558696E-5 58-59 2.664381557709109E-4 0.0014971286848079754 0.0 0.08442917655131078 3.8062593681558696E-5 60-61 2.7912568699809716E-4 0.001522503747262348 0.0 0.09062069179017768 5.0750124908744935E-5 62-63 3.1718828067965583E-4 0.0015351912784895342 0.0 0.0964886749827513 5.0750124908744935E-5 64-65 3.1718828067965583E-4 0.0017001291844429551 0.0 0.10264212762793662 5.0750124908744935E-5 66-67 3.2987581190684203E-4 0.0017001291844429551 0.0 0.10868139249207727 5.0750124908744935E-5 68-69 3.2987581190684203E-4 0.0017255042468973278 0.0 0.1147333448874451 6.343765613593116E-5 70-71 3.3621957752043513E-4 0.001744535543738107 0.0 0.11955460675377588 6.343765613593116E-5 72-73 3.6793840558840076E-4 0.0017572230749652931 0.0 0.1236717106369978 6.343765613593116E-5 74-75 3.6793840558840076E-4 0.0018016294342604452 0.0 0.12691337486554388 6.343765613593116E-5 76-77 3.7428217120199386E-4 0.0018714108560099695 0.0 0.13034535206249775 6.343765613593116E-5 78-79 3.933134680427732E-4 0.0018904421528507488 0.0 0.13270523287075442 6.343765613593116E-5 80-81 3.933134680427732E-4 0.0018904421528507488 0.0 0.13346014097877199 6.343765613593116E-5 82-83 3.996572336563664E-4 0.0018904421528507488 0.0 0.13396764222785945 6.343765613593116E-5 84-85 4.060009992699595E-4 0.0019031296840779349 0.0 0.13422139285240314 6.343765613593116E-5 86-87 4.060009992699595E-4 0.0019411922777594936 0.0 0.13431020557099346 6.343765613593116E-5 88 4.060009992699595E-4 0.002004629933895425 0.0 0.13433558063344783 6.343765613593116E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11565 0.0 51.664238 1 GTATCAA 20385 0.0 33.750988 1 TCAACGC 25025 0.0 27.83181 4 ATCAACG 25185 0.0 27.638472 3 CAACGCA 25645 0.0 27.17551 5 TATCAAC 26015 0.0 26.855198 2 AACGCAG 26790 0.0 26.06162 6 GTGGTAT 5480 0.0 25.047958 1 TGGTATC 5355 0.0 24.60099 2 ACGCAGA 31495 0.0 22.154816 7 CGCAGAG 32050 0.0 21.797546 8 GTACATG 31415 0.0 19.614681 1 TACATGG 32555 0.0 19.606613 2 TATACAC 7955 0.0 19.49821 3 ACATGGG 32565 0.0 19.026047 3 GCAGAGT 37360 0.0 18.699448 9 CTTATAC 5530 0.0 18.673748 1 GAGTACT 18045 0.0 18.651001 12-13 CAGAGTA 36850 0.0 17.741642 10-11 CATGGGG 21880 0.0 17.304815 4 >>END_MODULE