##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139597_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6892471 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.71123534651071 18.0 18.0 30.0 18.0 33.0 2 29.984556772164876 31.0 28.0 33.0 27.0 33.0 3 31.207635113734973 33.0 31.0 33.0 29.0 33.0 4 32.4680006633325 33.0 33.0 33.0 31.0 34.0 5 32.96939022304193 33.0 33.0 34.0 33.0 34.0 6 37.03680363689597 38.0 38.0 38.0 36.0 38.0 7 37.10436605391593 38.0 38.0 38.0 36.0 38.0 8 37.05690818285634 38.0 38.0 38.0 36.0 38.0 9 37.31779836288031 38.0 38.0 38.0 37.0 38.0 10-11 37.360959226379045 38.0 38.0 38.0 37.0 38.0 12-13 37.391178069519626 38.0 38.0 38.0 37.0 38.0 14-15 37.40422803374871 38.0 38.0 38.0 37.0 38.0 16-17 37.41798674234538 38.0 38.0 38.0 37.0 38.0 18-19 37.45932039467413 38.0 38.0 38.0 37.0 38.0 20-21 37.477088075912064 38.0 38.0 38.0 37.0 38.0 22-23 37.49800019606673 38.0 38.0 38.0 37.0 38.0 24-25 37.511908637107894 38.0 38.0 38.0 37.0 38.0 26-27 37.48596734713708 38.0 38.0 38.0 37.0 38.0 28-29 37.45832307439418 38.0 38.0 38.0 37.0 38.0 30-31 37.46537978246556 38.0 38.0 38.0 37.0 38.0 32-33 37.45282261966092 38.0 38.0 38.0 37.0 38.0 34-35 37.42035338583532 38.0 38.0 38.0 37.0 38.0 36-37 37.40201221381747 38.0 38.0 38.0 37.0 38.0 38-39 37.37377381314186 38.0 38.0 38.0 37.0 38.0 40-41 37.37140921456597 38.0 38.0 38.0 37.0 38.0 42-43 37.34960762337211 38.0 38.0 38.0 37.0 38.0 44-45 37.31000373538828 38.0 38.0 38.0 37.0 38.0 46-47 37.26174671288342 38.0 38.0 38.0 37.0 38.0 48-49 37.202295831048176 38.0 38.0 38.0 37.0 38.0 50-51 37.109750895098855 38.0 38.0 38.0 36.0 38.0 52-53 37.124665541444884 38.0 38.0 38.0 36.0 38.0 54-55 37.10131261544083 38.0 38.0 38.0 36.0 38.0 56-57 37.04588007690565 38.0 38.0 38.0 36.0 38.0 58-59 37.030668244370275 38.0 38.0 38.0 36.0 38.0 60-61 37.047870132578865 38.0 38.0 38.0 36.0 38.0 62-63 37.048499756759746 38.0 38.0 38.0 36.0 38.0 64-65 36.9845767431803 38.0 38.0 38.0 36.0 38.0 66-67 37.02726665214603 38.0 38.0 38.0 36.0 38.0 68-69 37.0402424403555 38.0 38.0 38.0 36.0 38.0 70-71 37.023601144325994 38.0 38.0 38.0 36.0 38.0 72-73 37.01771256933455 38.0 38.0 38.0 36.0 38.0 74-75 36.97461712698034 38.0 38.0 38.0 36.0 38.0 76-77 36.977659925671745 38.0 38.0 38.0 36.0 38.0 78-79 36.977538105115826 38.0 38.0 38.0 36.0 38.0 80-81 36.97355769407618 38.0 38.0 38.0 36.0 38.0 82-83 36.91607838300379 38.0 38.0 38.0 35.0 38.0 84-85 36.9014235373735 38.0 38.0 38.0 35.0 38.0 86-87 36.87128922278472 38.0 38.0 38.0 35.0 38.0 88-89 36.87757475131906 38.0 38.0 38.0 35.0 38.0 90-91 36.865575330111156 38.0 38.0 38.0 35.0 38.0 92-93 36.84420015394588 38.0 38.0 38.0 35.0 38.0 94-95 36.826368237473375 38.0 38.0 38.0 35.0 38.0 96-97 36.8011963599471 38.0 38.0 38.0 35.0 38.0 98-99 36.83562635753565 38.0 38.0 38.0 35.0 38.0 100 35.36530101480236 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 2.0 20 7.0 21 70.0 22 258.0 23 908.0 24 2264.0 25 4742.0 26 9274.0 27 16283.0 28 26468.0 29 39671.0 30 53422.0 31 68106.0 32 88647.0 33 120064.0 34 185158.0 35 350229.0 36 1215760.0 37 4711135.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.17255930420309 19.551377147615128 17.256162557666183 23.019900990515595 2 14.657513893983221 20.892076134849408 41.841637609631306 22.60877236153607 3 18.25667239469168 25.592693895387807 31.145773303689207 25.0048604062313 4 12.76753487068344 17.883860435437764 38.178933345481866 31.169671348396932 5 13.574304483834606 36.88681461264037 35.565720914893944 13.973159988631073 6 30.238966547701107 37.42611321832185 18.48775279576802 13.847167438209027 7 26.57645482160679 32.51912275516823 22.809923854285046 18.094498568939922 8 24.243888730181094 36.761489457119225 21.027654668405567 17.966967144294117 9 25.36913104168302 16.95734374508068 21.451566499155383 36.22195871408091 10-11 24.258353789228856 26.66043136053819 28.68617075066402 20.395044099568935 12-13 25.09145123715428 24.224077257633727 28.941957100726285 21.742514404485703 14-15 22.241384838615932 25.601471518704976 26.729209306792878 25.427934335886214 16-17 21.675615319962898 28.74600415438817 27.494392069259344 22.083988456389587 18-19 21.64213676053189 27.6659415759602 29.480095019623587 21.21182664388432 20-21 22.45461819653805 26.737791364490075 29.45536032314064 21.352230115831237 22-23 22.22311700351192 26.742282456963984 29.30058549892775 21.734015040596347 24-25 21.979364604058222 26.882943056938274 29.418183878804616 21.719508460198888 26-27 21.893699248363642 27.013097596765046 29.414366000803895 21.67883715406742 28-29 21.754486938613603 26.906923501783858 29.495374400855834 21.843215158746705 30-31 22.102699942452357 26.877497359189604 29.406730152712758 21.61307254564528 32-33 21.889279390237025 26.99416618086719 29.39155564187674 21.724998787019047 34-35 21.990341224782867 27.02382812654171 29.423575357698173 21.562255290977255 36-37 21.964507263689352 26.867122185981668 29.358718413390644 21.809652136938336 38-39 21.745112303879747 26.93321729242177 29.53874920335214 21.782921200346347 40-41 22.022034057805712 26.76844390813648 29.400647063763536 21.80887497029427 42-43 21.944738319512975 26.86646837756335 29.2682142017351 21.920579101188572 44-45 21.913720525916943 27.06742928891393 29.112454997977206 21.90639518719192 46-47 22.117423651934764 26.96953111136783 28.7267749715764 22.186270265121006 48-49 22.026250480569395 27.090119678577267 28.686073458034496 22.19755638281884 50-51 21.95458832647443 27.282832419189283 28.599031466465103 22.163547787871185 52-53 22.076663015897154 27.242089246184868 28.602910633956714 22.078337103961264 54-55 22.078202907728485 27.184429400953924 28.528938064695463 22.208429626622127 56-57 22.113855290342848 27.339584404532257 28.360139990691913 22.18642031443298 58-59 21.959240644393198 27.357364975060406 28.609037979160362 22.074356401386037 60-61 22.03335082677275 27.498098179091002 28.492340333804805 21.976210660331446 62-63 21.93861414310538 27.576259464331383 28.513823454190046 21.971302938373192 64-65 21.890404476471957 27.48668349217946 28.52551223723973 22.097399794108856 66-67 21.94229291325899 27.492449132321404 28.46329774917024 22.101960205249362 68-69 21.893684404145464 27.46643467377442 28.49267064000309 22.14721028207702 70-71 21.930623135815853 27.126877471000533 28.562930872902896 22.379568520280717 72-73 22.05849131228708 27.077255548813085 28.551902455164285 22.312350683735556 74-75 21.99085999329549 27.301019027445918 28.430603283804995 22.2775176954536 76-77 22.172779717631013 27.20630265234964 28.225926058653073 22.394991571366276 78-79 22.142130317890626 27.28233898616726 28.17335656354337 22.402174132398745 80-81 22.143517936679554 27.30140164124463 28.110263835949944 22.44481658612587 82-83 22.2607461204319 27.29947983557289 28.125636297639588 22.314137746355627 84-85 22.307659550662184 27.349501018725796 28.059941768277152 22.282897662334868 86-87 22.18228447754831 27.440087678192448 28.107830222624923 22.269797621634314 88-89 22.311054280853508 27.371499931465365 28.0380834396134 22.27936234806773 90-91 22.295703378059493 27.425924581875517 28.007821605341487 22.270550434723503 92-93 22.422784999061303 27.42302015882807 28.004088281697303 22.15010656041332 94-95 22.269616212955395 27.47754332847872 28.00156184394389 22.25127861462199 96-97 22.362900477829193 27.57957433764502 28.079923390460344 21.97760179406544 98-99 23.406082005593674 29.45593418756142 28.311582251966083 18.826401554878817 100 29.80734171701525 40.48995964771896 29.70269863526579 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2083.0 1 1932.5 2 1989.0 3 2336.0 4 2901.5 5 4051.5 6 5286.0 7 7522.5 8 9679.0 9 10295.0 10 10023.0 11 9704.5 12 10710.5 13 13450.5 14 19157.0 15 26097.5 16 30889.0 17 32700.5 18 31830.5 19 29223.5 20 26067.0 21 23480.5 22 22967.0 23 25878.0 24 32320.0 25 41672.0 26 53902.5 27 67658.0 28 81275.0 29 96809.0 30 112048.0 31 126715.0 32 144507.0 33 163417.0 34 180411.0 35 197131.5 36 216338.0 37 231641.0 38 242722.0 39 252490.0 40 262399.0 41 271130.0 42 276082.0 43 282012.5 44 291696.0 45 302137.0 46 303099.0 47 300201.0 48 299465.5 49 294574.5 50 287713.0 51 279804.0 52 267178.0 53 251162.5 54 233946.0 55 215470.5 56 195416.0 57 175460.0 58 156356.5 59 134982.5 60 112868.5 61 91112.0 62 71479.5 63 55046.5 64 41212.0 65 30772.5 66 22647.5 67 17143.0 68 13191.0 69 9810.0 70 7142.0 71 4986.5 72 3437.0 73 2313.0 74 1513.5 75 985.5 76 664.0 77 420.5 78 264.5 79 172.5 80 118.5 81 83.0 82 54.5 83 38.0 84 29.0 85 21.5 86 15.0 87 14.0 88 13.0 89 10.5 90 6.5 91 2.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004047895159805533 3 6.238691464933258E-4 4 7.254292401085184E-5 5 0.0 6 0.0 7 4.062403744607703E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.674540205797839E-4 24-25 5.369199586571633E-4 26-27 9.43363366152703E-5 28-29 0.0026569845954421533 30-31 0.00183149038402138 32-33 0.004560308993716098 34-35 0.009230209987642627 36-37 0.0014831802586064288 38-39 0.0 40-41 1.116755524422066E-4 42-43 5.850381883677457E-4 44-45 1.1351235139246736E-4 46-47 5.35176051513906E-5 48-49 0.004139405924200373 50-51 0.003250634692270131 52-53 2.9080318424771026E-4 54-55 0.0027890798017534755 56-57 0.03939313630744453 58-59 0.0611241668323558 60-61 0.02742203919144485 62-63 0.009850897862470282 64-65 8.966146818329593E-4 66-67 1.0906796973246382E-4 68-69 0.0011368744200031527 70-71 0.010001703294363605 72-73 0.015150893867988454 74-75 0.009602027555010445 76-77 0.011689792292435676 78-79 0.0025023422461562137 80-81 0.013409820724850712 82-83 0.043669152079772046 84-85 0.02344824861153997 86-87 0.003422760853293343 88-89 4.742879041407231E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 61.0 20-21 371.0 22-23 773.0 24-25 705.0 26-27 2036.0 28-29 5278.0 30-31 15169.0 32-33 20159.0 34-35 28107.0 36-37 43668.0 38-39 48268.0 40-41 48685.0 42-43 55768.0 44-45 66397.0 46-47 66905.0 48-49 61761.0 50-51 54339.0 52-53 50145.0 54-55 54836.0 56-57 55431.0 58-59 58956.0 60-61 59598.0 62-63 57532.0 64-65 61759.0 66-67 65451.0 68-69 67522.0 70-71 72147.0 72-73 59611.0 74-75 58406.0 76-77 61827.0 78-79 63917.0 80-81 63014.0 82-83 58842.0 84-85 58231.0 86-87 60408.0 88-89 62283.0 90-91 63194.0 92-93 62132.0 94-95 70567.0 96-97 207890.0 98-99 1551114.0 100-101 3269208.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.44067250095449 #Duplication Level Percentage of deduplicated Percentage of total 1 91.33776124427018 79.86635267930603 2 6.253575569146156 10.936337066033582 3 1.3670489051610768 3.586070268269344 4 0.49352153609483024 1.7261542003934416 5 0.2200939800536925 0.9622582814653268 6 0.10569755395438758 0.5545359119686544 7 0.06111525444574007 0.3740771264161723 8 0.04226555959944558 0.29565831640037554 9 0.02614299392738023 0.20573648731786479 >10 0.09013135555598632 1.2370930196333147 >50 0.002017362755058473 0.11946508619438137 >100 5.538141613246231E-4 0.08443305580883854 >500 4.991393999757071E-5 0.028478413420936884 >1k 2.495693472874664E-5 0.02335008737181115 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.4508584802170369E-5 0.0 2 0.0 0.0 0.0 2.9017169604340738E-5 0.0 3 0.0 0.0 0.0 2.9017169604340738E-5 0.0 4 0.0 2.9017169604340738E-5 0.0 7.254292401085184E-5 0.0 5 0.0 2.9017169604340738E-5 0.0 7.254292401085184E-5 0.0 6 8.705150881302221E-5 2.9017169604340738E-5 0.0 1.0156009361519258E-4 1.4508584802170369E-5 7 8.705150881302221E-5 2.9017169604340738E-5 0.0 1.0156009361519258E-4 2.9017169604340738E-5 8 8.705150881302221E-5 4.3525754406511105E-5 0.0 1.0156009361519258E-4 2.9017169604340738E-5 9 8.705150881302221E-5 8.705150881302221E-5 0.0 1.1606867841736295E-4 7.254292401085184E-5 10-11 1.0156009361519258E-4 8.705150881302221E-5 0.0 1.5959443282387406E-4 7.254292401085184E-5 12-13 1.1606867841736295E-4 1.0156009361519258E-4 0.0 1.8861160242821478E-4 9.430580121410739E-5 14-15 1.1606867841736295E-4 1.4508584802170368E-4 0.0 1.8861160242821478E-4 1.0156009361519258E-4 16-17 1.8861160242821478E-4 1.4508584802170368E-4 0.0 2.0312018723038516E-4 1.0156009361519258E-4 18-19 1.8861160242821478E-4 1.5959443282387406E-4 0.0 2.248830644336407E-4 1.0156009361519258E-4 20-21 1.8861160242821478E-4 1.8861160242821478E-4 0.0 2.974259884444925E-4 1.2332297081844813E-4 22-23 1.8861160242821478E-4 2.1762877203255552E-4 0.0 3.4820603525208884E-4 1.5234014042278887E-4 24-25 1.8861160242821478E-4 2.393916492358111E-4 0.0 3.844774972575147E-4 1.7410301762604442E-4 26-27 1.8861160242821478E-4 2.4664594163689626E-4 0.0 4.8603759087270735E-4 1.8861160242821478E-4 28-29 1.8861160242821478E-4 2.4664594163689626E-4 0.0 9.86583766547585E-4 1.8861160242821478E-4 30-31 1.8861160242821478E-4 2.7566311124123697E-4 0.0 0.002524493755577644 1.9586589482929997E-4 32-33 1.8861160242821478E-4 2.7566311124123697E-4 0.0 0.005767162458862721 2.0312018723038516E-4 34-35 1.8861160242821478E-4 3.191888656477481E-4 0.0 0.009967397759091043 2.0312018723038516E-4 36-37 1.9586589482929997E-4 3.699689124553444E-4 0.0 0.017207181575374056 2.1762877203255552E-4 38-39 2.0312018723038516E-4 3.9173178965859994E-4 0.0 0.03685180539751273 2.1762877203255552E-4 40-41 2.0312018723038516E-4 4.497661288672814E-4 0.0 0.05793277911506628 2.321373568347259E-4 42-43 2.0312018723038516E-4 5.005461756748777E-4 0.0 0.06964120705041776 2.321373568347259E-4 44-45 2.1037447963147033E-4 6.673949008998369E-4 0.0 0.0836782628465176 2.393916492358111E-4 46-47 2.1762877203255552E-4 7.834635793171999E-4 0.0 0.09928950009365292 2.4664594163689626E-4 48-49 2.1762877203255552E-4 7.979721641193703E-4 0.0 0.11453802272073396 2.6115452643906664E-4 50-51 2.3213735683472587E-4 8.632607957291369E-4 0.0 0.12924247341773365 2.7566311124123697E-4 52-53 2.4664594163689626E-4 8.705150881302221E-4 0.0 0.17589482784911248 2.7566311124123697E-4 54-55 2.4664594163689626E-4 8.850236729323925E-4 0.0 0.2337405554553657 2.7566311124123697E-4 56-57 2.4664594163689626E-4 9.140408425367332E-4 0.0 0.3158083653888424 2.7566311124123697E-4 58-59 2.4664594163689626E-4 9.140408425367332E-4 0.0 0.36993989528574 2.7566311124123697E-4 60-61 2.539002340379814E-4 9.430580121410739E-4 0.0 0.38892437849938 3.0468028084557774E-4 62-63 2.9017169604340736E-4 9.793294741465E-4 0.0 0.40505067050699234 3.0468028084557774E-4 64-65 2.9017169604340736E-4 0.0011606867841736294 0.0 0.41292157776216976 3.0468028084557774E-4 66-67 2.9017169604340736E-4 0.0011606867841736294 0.0 0.42031370171887555 3.0468028084557774E-4 68-69 2.9017169604340736E-4 0.00118970395377797 0.0 0.42756073982755965 3.0468028084557774E-4 70-71 2.9017169604340736E-4 0.0012042125385801406 0.0 0.43337868233322996 3.1193457324666296E-4 72-73 2.9017169604340736E-4 0.0012042125385801406 0.0 0.437383051738629 3.191888656477481E-4 74-75 2.9017169604340736E-4 0.0012042125385801406 0.0 0.44074178912033146 3.191888656477481E-4 76-77 2.9017169604340736E-4 0.0012332297081844813 0.0 0.44412954367163826 3.191888656477481E-4 78-79 2.9017169604340736E-4 0.001262246877788822 0.0 0.4464364086551833 3.191888656477481E-4 80-81 2.9017169604340736E-4 0.0012767554625909925 0.0 0.44733594091291784 3.191888656477481E-4 82-83 2.9017169604340736E-4 0.0012767554625909925 0.0 0.44794530147460904 3.4820603525208884E-4 84-85 3.0468028084557774E-4 0.0012767554625909925 0.0 0.4482427274630535 3.4820603525208884E-4 86-87 3.0468028084557774E-4 0.0012840097549920776 0.0 0.4484023218958774 3.4820603525208884E-4 88 3.191888656477481E-4 0.0013347898017996738 0.0 0.4484168304806796 3.627146200542592E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10425 0.0 50.72508 1 GTATCAA 18580 0.0 34.823643 1 TCAACGC 23355 0.0 27.918377 4 ATCAACG 23615 0.0 27.646824 3 CAACGCA 23755 0.0 27.44827 5 TATCAAC 24110 0.0 27.272522 2 AACGCAG 24455 0.0 26.714197 6 GTGGTAT 4790 0.0 25.294174 1 TGGTATC 4685 0.0 24.334545 2 ACGCAGA 27845 0.0 23.401436 7 CGCAGAG 28585 0.0 22.825062 8 GCAGAGT 32535 0.0 20.10564 9 GAGTACT 19020 0.0 19.617851 12-13 CAGAGTA 31845 0.0 18.810791 10-11 AGAGTAC 29765 0.0 18.160824 10-11 GTACTTT 20890 0.0 17.802027 14-15 TACATGG 22460 0.0 17.756693 2 GTACATG 22390 0.0 17.417635 1 TAGACCG 490 0.0 17.170078 5 ACATGGG 22370 0.0 17.16905 3 >>END_MODULE