##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139595_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7408376 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.91848280918787 18.0 18.0 30.0 18.0 33.0 2 30.095388382015166 31.0 29.0 33.0 27.0 33.0 3 31.333996816576263 33.0 31.0 33.0 29.0 33.0 4 32.51162656970975 33.0 33.0 33.0 31.0 34.0 5 33.00346837147575 33.0 33.0 34.0 33.0 34.0 6 37.06490572292767 38.0 38.0 38.0 36.0 38.0 7 37.157979697574746 38.0 38.0 38.0 36.0 38.0 8 37.10696230860852 38.0 38.0 38.0 36.0 38.0 9 37.34457079392298 38.0 38.0 38.0 37.0 38.0 10-11 37.382222028147595 38.0 38.0 38.0 37.0 38.0 12-13 37.40489784805739 38.0 38.0 38.0 37.0 38.0 14-15 37.42671814983473 38.0 38.0 38.0 37.0 38.0 16-17 37.443537558028915 38.0 38.0 38.0 37.0 38.0 18-19 37.46971421266955 38.0 38.0 38.0 37.0 38.0 20-21 37.48441541216313 38.0 38.0 38.0 37.0 38.0 22-23 37.50392902536136 38.0 38.0 38.0 37.0 38.0 24-25 37.51907776840299 38.0 38.0 38.0 37.5 38.0 26-27 37.4933712032186 38.0 38.0 38.0 37.0 38.0 28-29 37.46712536974621 38.0 38.0 38.0 37.0 38.0 30-31 37.4756394114012 38.0 38.0 38.0 37.0 38.0 32-33 37.462940473300286 38.0 38.0 38.0 37.0 38.0 34-35 37.43363671027899 38.0 38.0 38.0 37.0 38.0 36-37 37.41553650061897 38.0 38.0 38.0 37.0 38.0 38-39 37.40471322752705 38.0 38.0 38.0 37.0 38.0 40-41 37.38994638697689 38.0 38.0 38.0 37.0 38.0 42-43 37.36698089358238 38.0 38.0 38.0 37.0 38.0 44-45 37.330231780133914 38.0 38.0 38.0 37.0 38.0 46-47 37.28591409585773 38.0 38.0 38.0 37.0 38.0 48-49 37.226455361371535 38.0 38.0 38.0 37.0 38.0 50-51 37.14330876104156 38.0 38.0 38.0 37.0 38.0 52-53 37.16433956875291 38.0 38.0 38.0 37.0 38.0 54-55 37.14671729040913 38.0 38.0 38.0 36.5 38.0 56-57 37.09571606503813 38.0 38.0 38.0 36.0 38.0 58-59 37.082160526531766 38.0 38.0 38.0 36.0 38.0 60-61 37.1044292245966 38.0 38.0 38.0 36.0 38.0 62-63 37.10658576942201 38.0 38.0 38.0 36.0 38.0 64-65 37.049139645391364 38.0 38.0 38.0 36.0 38.0 66-67 37.09258547115839 38.0 38.0 38.0 36.0 38.0 68-69 37.10389581246831 38.0 38.0 38.0 36.0 38.0 70-71 37.086881001703276 38.0 38.0 38.0 36.0 38.0 72-73 37.082238569630334 38.0 38.0 38.0 36.0 38.0 74-75 37.040401725407506 38.0 38.0 38.0 36.0 38.0 76-77 37.04591934060814 38.0 38.0 38.0 36.0 38.0 78-79 37.04833681700727 38.0 38.0 38.0 36.0 38.0 80-81 37.045607130966445 38.0 38.0 38.0 36.0 38.0 82-83 36.99504210290905 38.0 38.0 38.0 36.0 38.0 84-85 36.98057814570002 38.0 38.0 38.0 36.0 38.0 86-87 36.95308607917035 38.0 38.0 38.0 36.0 38.0 88-89 36.96137202149814 38.0 38.0 38.0 36.0 38.0 90-91 36.94739805358746 38.0 38.0 38.0 35.5 38.0 92-93 36.93056819988077 38.0 38.0 38.0 35.0 38.0 94-95 36.91587479000803 38.0 38.0 38.0 35.0 38.0 96-97 36.89612643387864 38.0 38.0 38.0 35.0 38.0 98-99 36.92929624858571 38.0 38.0 38.0 35.0 38.0 100 35.45551610409646 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 8.0 21 59.0 22 302.0 23 928.0 24 2576.0 25 5105.0 26 9616.0 27 17036.0 28 28003.0 29 41457.0 30 55689.0 31 71876.0 32 92723.0 33 124890.0 34 189579.0 35 352316.0 36 1174504.0 37 5241704.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.61656697770199 19.601245941080744 17.033625183171047 22.74856189804621 2 14.723649198817288 21.064644829515146 41.724864633706474 22.486841337961096 3 18.25591672925399 25.88705719356464 30.899464871638845 24.95756120554253 4 12.748474056840312 17.778434092578273 38.411356129804005 31.061735720777406 5 13.513312499257596 37.3402213926507 35.328336466723606 13.818129641368095 6 30.232928242303036 37.457858510421175 18.60973309130098 13.699480155974806 7 26.812962325792412 32.635326364332265 22.869739486532122 17.681971823343208 8 24.47972403128567 36.62999826142734 20.959276365022507 17.931001342264487 9 25.756765045402663 16.910534778472368 21.424978969749915 35.90772120637505 10-11 24.348595427661877 26.756336341459992 28.635513370271703 20.25955486060643 12-13 25.212921158429324 24.411072008224206 28.843102725887565 21.532904107458908 14-15 22.339065943737197 25.66103556298978 26.776077510104777 25.223820983168245 16-17 21.685616388801 28.7704282288048 27.47273491518249 22.07122046721171 18-19 21.693951548895466 27.808152555971784 29.40581714535007 21.09207874978268 20-21 22.6489934012433 26.893238985868468 29.324906916772083 21.132860696116154 22-23 22.380011047617607 26.754801474959542 29.198175685197974 21.667011792224873 24-25 22.041802180821936 26.89337262627901 29.307095646381846 21.757729546517208 26-27 21.90960310710798 27.042185387697913 29.30609730922796 21.742114195966145 28-29 21.88782519300759 27.02542497864775 29.34422392608043 21.74252590226423 30-31 22.144001803651747 26.933829878226472 29.214832981091394 21.707335337030386 32-33 21.88495758370184 27.12084029541217 29.175773136865786 21.818428984020205 34-35 22.057680899509556 27.098726919883887 29.17538940687357 21.66820277373299 36-37 22.061707807497175 26.955407877331407 29.123162681217856 21.85972163395356 38-39 21.885596256035722 27.143084123008226 29.21318122417844 21.75813839677761 40-41 22.147871943074556 26.995181529397872 29.07421011735698 21.78273641017059 42-43 22.046454810031527 27.071588993975134 28.86495783284712 22.01699836314622 44-45 22.072131913554784 27.200500389831785 28.789575453464344 21.937792243149087 46-47 22.183310085854256 27.16476012973232 28.50960207803366 22.14232770637977 48-49 22.123088988934807 27.26523792814653 28.482857554528103 22.12881552839056 50-51 22.12269990442896 27.474106861437985 28.265923049062636 22.137270185070417 52-53 22.300630773911898 27.363956331368865 28.17382716262515 22.161585732094085 54-55 22.287504283161596 27.305098123437222 28.187445715523296 22.21995187787789 56-57 22.2274015227046 27.427423266025 28.192041447912253 22.153133763358152 58-59 22.16066720785895 27.407783767502853 28.23696765710552 22.194581367532678 60-61 22.231742535094455 27.399029730110268 28.250570476158227 22.118657258637047 62-63 22.211623638495706 27.430402855285895 28.254243366899868 22.10373013931853 64-65 22.183405171243027 27.339558313047498 28.27012884950496 22.206907666204515 66-67 22.265447647266527 27.337352635666296 28.152219259084703 22.244980457982475 68-69 22.174113623242295 27.338044491597852 28.274309411471414 22.213532473688435 70-71 22.18047507043426 27.075589133246126 28.347396913172414 22.3965388831472 72-73 22.262252842501603 27.133415816717445 28.29067319956367 22.313658141217285 74-75 22.09015960182741 27.398060872798446 28.176483425040267 22.33529610033388 76-77 22.268103141455054 27.26460065334046 28.1306349099236 22.336661295280884 78-79 22.228654112797905 27.259144496785797 28.084572244364576 22.42762914605172 80-81 22.225173425006993 27.34982487524677 28.0223462686397 22.402655431106535 82-83 22.35251011314076 27.30647589964815 28.04848480658618 22.292529180624907 84-85 22.377979118680038 27.298417104125182 27.998683177972605 22.32492059922217 86-87 22.247767759338544 27.38739832218703 28.02962655558471 22.335207362889715 88-89 22.347809969287358 27.352575285420595 27.95381524315837 22.34579950213368 90-91 22.38436999542807 27.438688498716342 27.906123558833396 22.2708179470222 92-93 22.424507515892447 27.402188949346996 27.89397470707044 22.27932882769012 94-95 22.315055845279698 27.424332849452078 27.88463732602655 22.37597397924167 96-97 22.43239123829226 27.546672424493845 27.91893343207971 22.10200290513418 98-99 23.483092815376498 29.472961340964222 28.129595600635724 18.914350243023552 100 22.415142029325494 30.302732251119807 22.052523929495653 25.229601790059046 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1702.0 1 1629.5 2 2022.0 3 2642.5 4 3269.0 5 4388.0 6 5486.5 7 7569.5 8 9904.5 9 10899.0 10 10806.5 11 10604.0 12 11476.5 13 14004.0 14 19641.5 15 26362.0 16 30820.5 17 32430.5 18 31248.5 19 28351.5 20 25165.5 21 22754.0 22 22651.5 23 25650.5 24 31680.0 25 40978.0 26 53427.0 27 67448.0 28 81298.5 29 97641.5 30 114450.0 31 130328.0 32 149082.0 33 169413.0 34 189139.5 35 207770.5 36 227887.5 37 244828.0 38 256681.0 39 267340.0 40 278352.0 41 286716.5 42 290402.0 43 295944.0 44 300996.0 45 305462.5 46 307546.5 47 306151.5 48 306053.0 49 304412.0 50 298827.0 51 290390.0 52 279553.0 53 265305.5 54 248473.5 55 230012.5 56 210724.0 57 190807.5 58 170541.0 59 148975.5 60 126274.0 61 103128.0 62 81369.0 63 63020.5 64 47811.0 65 35651.0 66 26294.5 67 19873.5 68 15048.0 69 11059.0 70 8056.0 71 5764.5 72 4004.5 73 2673.0 74 1743.5 75 1138.0 76 713.0 77 420.0 78 271.0 79 169.5 80 109.0 81 69.5 82 41.0 83 29.0 84 25.5 85 21.5 86 16.5 87 12.5 88 9.5 89 7.0 90 5.0 91 3.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0044274210704208315 3 8.098940982477132E-4 4 9.448764479556653E-5 5 0.0 6 0.0 7 6.074205736857849E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.467082929910984E-4 24-25 4.7924582097644107E-4 26-27 8.100702533427212E-5 28-29 0.0029441197959643953 30-31 0.0019463488927707738 32-33 0.004535681290808862 34-35 0.009302636758090121 36-37 0.001525068691068265 38-39 0.0 40-41 8.945513223016805E-5 42-43 6.090581621476166E-4 44-45 1.3939969195456072E-4 46-47 3.514179821003142E-5 48-49 0.004202593049520579 50-51 0.003385332952138177 52-53 2.733418078884719E-4 54-55 0.0029489454223382543 56-57 0.042263244582954086 58-59 0.06409592313849571 60-61 0.02990355139565249 62-63 0.010574181022944626 64-65 8.223919367564002E-4 66-67 1.0656018766771337E-4 68-69 0.0012906414741645459 70-71 0.011277828371153487 72-73 0.016699039159364264 74-75 0.010459832898639321 76-77 0.01264915394227711 78-79 0.002795578667462856 80-81 0.01426361986410971 82-83 0.044661230703596594 84-85 0.023772609217939323 86-87 0.003701587578177152 88-89 1.8662529466649508E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 54.0 20-21 224.0 22-23 538.0 24-25 558.0 26-27 1585.0 28-29 4122.0 30-31 11914.0 32-33 15651.0 34-35 21866.0 36-37 34411.0 38-39 41240.0 40-41 40845.0 42-43 47605.0 44-45 58544.0 46-47 59696.0 48-49 56144.0 50-51 50351.0 52-53 49218.0 54-55 53455.0 56-57 55664.0 58-59 55854.0 60-61 54172.0 62-63 53720.0 64-65 57009.0 66-67 60197.0 68-69 61913.0 70-71 60736.0 72-73 57704.0 74-75 58802.0 76-77 62325.0 78-79 64447.0 80-81 64261.0 82-83 61332.0 84-85 59975.0 86-87 62186.0 88-89 64532.0 90-91 65655.0 92-93 65400.0 94-95 75279.0 96-97 227447.0 98-99 501069.0 100-101 4910676.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.94533499701684 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82274815598075 78.9661426377144 2 6.649920164222964 11.563590727635658 3 1.4604487887829385 3.8093762756016023 4 0.49973523317388985 1.7379858903246472 5 0.21468725771077454 0.933302777062709 6 0.1168215512322314 0.6094253344054514 7 0.07131316169998841 0.4340242713591347 8 0.04171664681618714 0.2901654265908502 9 0.028782144141589933 0.22522258478906662 >10 0.09168438016334204 1.228288714179421 >50 0.0016730999188509104 0.09389682486136326 >100 4.223415350005565E-4 0.0703097487834203 >500 2.3537318525981177E-5 0.01397732210170107 >1k 2.3537302893089938E-5 0.024291464590545927 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.6996469941590437E-5 0.0 1.3498234970795218E-5 0.0 5 0.0 2.6996469941590437E-5 0.0 1.3498234970795218E-5 0.0 6 1.3498234970795218E-5 2.6996469941590437E-5 0.0 1.3498234970795218E-5 1.3498234970795218E-5 7 1.3498234970795218E-5 2.6996469941590437E-5 0.0 1.3498234970795218E-5 1.3498234970795218E-5 8 1.3498234970795218E-5 2.6996469941590437E-5 0.0 1.3498234970795218E-5 1.3498234970795218E-5 9 1.3498234970795218E-5 6.74911748539761E-5 0.0 1.3498234970795218E-5 1.3498234970795218E-5 10-11 1.3498234970795218E-5 6.74911748539761E-5 0.0 2.6996469941590437E-5 2.6996469941590437E-5 12-13 1.3498234970795218E-5 6.74911748539761E-5 0.0 2.6996469941590437E-5 2.6996469941590437E-5 14-15 1.3498234970795218E-5 1.417314671933498E-4 0.0 2.6996469941590437E-5 2.6996469941590437E-5 16-17 4.0494704912385654E-5 1.484805846787474E-4 0.0 2.6996469941590437E-5 2.6996469941590437E-5 18-19 4.0494704912385654E-5 1.484805846787474E-4 0.0 6.0742057368578484E-5 2.6996469941590437E-5 20-21 4.0494704912385654E-5 1.6197881964954261E-4 0.0 6.74911748539761E-5 3.3745587426988044E-5 22-23 4.0494704912385654E-5 1.8897528959113306E-4 0.0 8.098940982477132E-5 4.7243822397783264E-5 24-25 4.0494704912385654E-5 2.024735245619283E-4 0.0 9.448764479556653E-5 5.3992939883180874E-5 26-27 4.0494704912385654E-5 2.159717595327235E-4 0.0 1.2823323222255458E-4 5.3992939883180874E-5 28-29 4.0494704912385654E-5 2.159717595327235E-4 0.0 3.9144881415306134E-4 5.3992939883180874E-5 30-31 4.0494704912385654E-5 2.2946999450351873E-4 0.0 0.001120353502576003 5.3992939883180874E-5 32-33 4.0494704912385654E-5 2.699646994159044E-4 0.0 0.002470176999655525 5.3992939883180874E-5 34-35 5.3992939883180874E-5 2.7671381690130197E-4 0.0 0.004508410480245603 5.3992939883180874E-5 36-37 5.3992939883180874E-5 2.834629343866996E-4 0.0 0.007633251875984697 5.3992939883180874E-5 38-39 5.3992939883180874E-5 2.834629343866996E-4 0.0 0.012404877938160806 5.3992939883180874E-5 40-41 5.3992939883180874E-5 3.2395763929908523E-4 0.0 0.01739247575986964 5.3992939883180874E-5 42-43 5.3992939883180874E-5 3.5770322672607326E-4 0.0 0.02275802416076074 5.3992939883180874E-5 44-45 5.3992939883180874E-5 4.656891064924351E-4 0.0 0.028218060206447404 5.3992939883180874E-5 46-47 5.3992939883180874E-5 5.399293988318088E-4 0.0 0.034609474465118945 8.098940982477131E-5 48-49 5.3992939883180874E-5 5.534276338026039E-4 0.0 0.04101438695876127 1.0798587976636175E-4 50-51 5.3992939883180874E-5 6.546643960835682E-4 0.0 0.04711558916556071 1.0798587976636175E-4 52-53 5.3992939883180874E-5 6.749117485397609E-4 0.0 0.05319654401990395 1.1473499725175935E-4 54-55 5.3992939883180874E-5 6.816608660251585E-4 0.0 0.05885230447266716 1.2148411473715697E-4 56-57 5.3992939883180874E-5 6.884099835105562E-4 0.0 0.06535170461110505 1.2148411473715697E-4 58-59 5.3992939883180874E-5 6.884099835105562E-4 0.0 0.07264075149533447 1.2148411473715697E-4 60-61 5.3992939883180874E-5 7.08657335966749E-4 0.0 0.07922114104359713 1.2148411473715697E-4 62-63 6.74911748539761E-5 7.491520408791346E-4 0.0 0.08543032913016294 1.2148411473715697E-4 64-65 6.74911748539761E-5 8.368905681893035E-4 0.0 0.09160577162930175 1.2148411473715697E-4 66-67 6.74911748539761E-5 8.368905681893035E-4 0.0 0.09776096677598436 1.2823323222255458E-4 68-69 6.74911748539761E-5 8.503888031600987E-4 0.0 0.10322775193915643 1.349823497079522E-4 70-71 6.74911748539761E-5 8.706361556162916E-4 0.0 0.10871478445478469 1.484805846787474E-4 72-73 6.74911748539761E-5 8.773852731016892E-4 0.0 0.11265626906625689 1.7547705462033785E-4 74-75 6.74911748539761E-5 9.043817430432797E-4 0.0 0.11559213517240485 1.7547705462033785E-4 76-77 6.74911748539761E-5 9.448764479556653E-4 0.0 0.11845376098621344 1.7547705462033785E-4 78-79 6.74911748539761E-5 9.651238004118581E-4 0.0 0.12042450329194954 1.7547705462033785E-4 80-81 6.74911748539761E-5 9.718729178972557E-4 0.0 0.1211129132754601 1.8222617210573544E-4 82-83 6.74911748539761E-5 9.786220353826534E-4 0.0 0.12156510414698174 1.8897528959113306E-4 84-85 7.42402923393737E-5 9.85371152868051E-4 0.0 0.12174058120160208 1.8897528959113306E-4 86-87 8.098940982477131E-5 9.988693878388462E-4 0.0 0.12188231266879543 1.8897528959113306E-4 88 8.098940982477131E-5 0.0011068552676052079 0.0 0.12190256002125162 1.8897528959113306E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10525 0.0 51.0357 1 GTATCAA 19485 0.0 37.4679 1 TCAACGC 24560 0.0 30.073128 4 ATCAACG 24775 0.0 29.829453 3 CAACGCA 25285 0.0 29.159779 5 TATCAAC 25660 0.0 29.102924 2 AACGCAG 26040 0.0 28.297861 6 TGGTATC 4980 0.0 24.963976 2 ACGCAGA 29910 0.0 24.636454 7 GTGGTAT 5180 0.0 24.248394 1 CGCAGAG 30985 0.0 23.753721 8 GCAGAGT 34890 0.0 21.156559 9 TACATGG 27635 0.0 20.352581 2 GTACATG 27855 0.0 20.130274 1 ACATGGG 27650 0.0 19.813326 3 GAGTACT 19675 0.0 19.085442 12-13 AGAGTAC 32425 0.0 18.719584 10-11 CAGAGTA 34645 0.0 18.577946 10-11 GTACTTT 21660 0.0 17.218048 14-15 CATGGGG 18295 0.0 17.151432 4 >>END_MODULE