##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139593_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8268555 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.617567398414838 18.0 18.0 30.0 18.0 33.0 2 29.92854567696532 30.0 28.0 33.0 27.0 33.0 3 31.178573886247356 33.0 31.0 33.0 29.0 33.0 4 32.462316087877504 33.0 33.0 33.0 31.0 34.0 5 32.963785691695826 33.0 33.0 34.0 33.0 34.0 6 37.01803761358544 38.0 38.0 38.0 35.0 38.0 7 37.085620280689916 38.0 38.0 38.0 36.0 38.0 8 37.030805261620685 38.0 38.0 38.0 36.0 38.0 9 37.29543275699321 38.0 38.0 38.0 36.0 38.0 10-11 37.33590778558043 38.0 38.0 38.0 37.0 38.0 12-13 37.36746638318303 38.0 38.0 38.0 37.0 38.0 14-15 37.383943083162656 38.0 38.0 38.0 37.0 38.0 16-17 37.398198778383886 38.0 38.0 38.0 37.0 38.0 18-19 37.43873808664271 38.0 38.0 38.0 37.0 38.0 20-21 37.45658523937677 38.0 38.0 38.0 37.0 38.0 22-23 37.48057560228713 38.0 38.0 38.0 37.0 38.0 24-25 37.49544375306054 38.0 38.0 38.0 37.0 38.0 26-27 37.471744480035866 38.0 38.0 38.0 37.0 38.0 28-29 37.44727529503618 38.0 38.0 38.0 37.0 38.0 30-31 37.4549569908987 38.0 38.0 38.0 37.0 38.0 32-33 37.44252051275465 38.0 38.0 38.0 37.0 38.0 34-35 37.41310893351924 38.0 38.0 38.0 37.0 38.0 36-37 37.395640160326394 38.0 38.0 38.0 37.0 38.0 38-39 37.38160114843201 38.0 38.0 38.0 37.0 38.0 40-41 37.365177864513626 38.0 38.0 38.0 37.0 38.0 42-43 37.34344607398033 38.0 38.0 38.0 37.0 38.0 44-45 37.30565093208216 38.0 38.0 38.0 37.0 38.0 46-47 37.257917368876505 38.0 38.0 38.0 37.0 38.0 48-49 37.199108440877424 38.0 38.0 38.0 37.0 38.0 50-51 37.110413826808056 38.0 38.0 38.0 36.0 38.0 52-53 37.12759441235791 38.0 38.0 38.0 36.0 38.0 54-55 37.1041296927995 38.0 38.0 38.0 36.0 38.0 56-57 37.049878316182976 38.0 38.0 38.0 36.0 38.0 58-59 37.035582952701965 38.0 38.0 38.0 36.0 38.0 60-61 37.056836430534034 38.0 38.0 38.0 36.0 38.0 62-63 37.053085862370224 38.0 38.0 38.0 36.0 38.0 64-65 36.99473273697898 38.0 38.0 38.0 36.0 38.0 66-67 37.03425096215502 38.0 38.0 38.0 36.0 38.0 68-69 37.04776039920302 38.0 38.0 38.0 36.0 38.0 70-71 37.026889629624335 38.0 38.0 38.0 36.0 38.0 72-73 37.02070491525818 38.0 38.0 38.0 36.0 38.0 74-75 36.97341365141281 38.0 38.0 38.0 36.0 38.0 76-77 36.97591909047227 38.0 38.0 38.0 36.0 38.0 78-79 36.97516808335744 38.0 38.0 38.0 36.0 38.0 80-81 36.970399101884425 38.0 38.0 38.0 36.0 38.0 82-83 36.91651124314487 38.0 38.0 38.0 35.0 38.0 84-85 36.896912763213926 38.0 38.0 38.0 35.0 38.0 86-87 36.865507772127835 38.0 38.0 38.0 35.0 38.0 88-89 36.87375085043428 38.0 38.0 38.0 35.0 38.0 90-91 36.857660669731686 38.0 38.0 38.0 35.0 38.0 92-93 36.835473739583335 38.0 38.0 38.0 35.0 38.0 94-95 36.817855268065735 38.0 38.0 38.0 35.0 38.0 96-97 36.79814743621218 38.0 38.0 38.0 35.0 38.0 98-99 36.83309041036104 38.0 38.0 38.0 35.0 38.0 100 35.296967978629034 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 15.0 21 97.0 22 348.0 23 1109.0 24 2847.0 25 6056.0 26 11099.0 27 19546.0 28 31379.0 29 47517.0 30 64375.0 31 84579.0 32 109203.0 33 148684.0 34 227613.0 35 427662.0 36 1416290.0 37 5670132.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.63647154793068 19.1294972337972 17.379167218455947 22.85486399981617 2 15.098080692596962 20.744395151424552 41.176535329210814 22.98098882676767 3 18.61476887598366 25.193484705719293 30.636260605482285 25.555485812814755 4 13.16013085728453 17.382564052947615 37.52644659583603 31.930858493931822 5 13.987208163941583 36.77929214959567 35.010555048614904 14.222944637847846 6 31.184215379833596 36.685224927451046 18.10018800141016 14.030371691305191 7 27.423620532724247 32.25470392638681 22.26927485675184 18.05240068413711 8 24.90507712653541 36.386587499266795 20.517659978073556 18.19067539612423 9 25.86732506465761 16.868896681463692 21.029006882097296 36.234771371781406 10-11 24.845145252102697 26.429593804479744 28.088245164965343 20.63701577845222 12-13 25.521768918511157 23.99219694372233 28.44890673158732 22.037127406179195 14-15 22.657671140846254 25.285204004810996 26.31069152953569 25.746433324807054 16-17 22.161550597413935 28.35647220100731 27.008431340179754 22.473545861399 18-19 22.17281012220394 27.41044233242689 28.929891619515143 21.486855925854034 20-21 23.018639458999196 26.51117890425338 28.90346423306366 21.56671740368377 22-23 22.781815519866676 26.31992620731774 28.78860419990086 22.109654072914722 24-25 22.488263955675 26.478990754013402 28.893372453682677 22.13937283662892 26-27 22.302582268779116 26.646500579918136 28.8658427006524 22.185074450650347 28-29 22.307580004618806 26.63619609226167 28.930637242311974 22.125586660807546 30-31 22.579762896692223 26.505210252941236 28.813931855308283 22.101094995058254 32-33 22.35419232984193 26.695801193213324 28.749059387518756 22.200947089425988 34-35 22.516275066105823 26.658076014387905 28.780056672292403 22.045592247213868 36-37 22.481197736351938 26.535701592515302 28.733309314230222 22.249791356902534 38-39 22.348779233365093 26.723662029209816 28.819391749782863 22.108166987642228 40-41 22.5990868930202 26.58943789240692 28.680883643893818 22.13059157067906 42-43 22.44750499184806 26.684384380407472 28.512007849822634 22.35610277792183 44-45 22.49118700590423 26.793763230703604 28.384076362338888 22.33097340105327 46-47 22.59304806690911 26.786160667484012 28.105597918852055 22.51519334675483 48-49 22.55290588551168 26.878741914529165 28.05008342006844 22.518268779890715 50-51 22.51201220152834 27.075485997748466 27.945809525186966 22.46669227553623 52-53 22.72892064452017 26.941665274454014 27.82265530279102 22.506758778234794 54-55 22.719319982763515 26.86532828669897 27.832181630283632 22.583170100253884 56-57 22.639115583958002 27.034375196217532 27.840977669997987 22.485531549826483 58-59 22.619249583269042 26.991673643605402 27.873774669328515 22.515302103797044 60-61 22.671556272862222 26.943852989422517 27.92071940896632 22.46387132874894 62-63 22.64230197309032 27.021964226237756 27.930399645702863 22.40533415496906 64-65 22.633919603313622 26.89311374828449 27.93275127417636 22.54021537422552 66-67 22.67573490716407 26.961510232802404 27.808740515342308 22.554014344691215 68-69 22.59427523922395 26.91113342531977 27.96978674638309 22.524804589073195 70-71 22.59794853807803 26.672081600357245 28.004661862834467 22.72530799873026 72-73 22.686394787682993 26.732866392435064 27.902378215461383 22.678360604420565 74-75 22.49596949845293 27.013590949265403 27.857012792552784 22.63342675972888 76-77 22.68570691607674 26.8792871036643 27.74652182132011 22.688484158938856 78-79 22.615005290686728 26.88920104245754 27.698437490748525 22.79735617610721 80-81 22.62534927771088 26.96949542254452 27.650329825659618 22.75482547408498 82-83 22.75382691476018 26.92163807861884 27.70362988656632 22.620905120054662 84-85 22.75559159998325 26.925349100811513 27.64187167547086 22.677187623734373 86-87 22.658954754428596 27.01619110072258 27.645442150722477 22.679411994126347 88-89 22.753736871824337 26.98337193245233 27.579888791695158 22.68300240402818 90-91 22.77616070345118 27.028045496500358 27.563742844379867 22.632050955668596 92-93 22.796191390421665 27.015623404910187 27.534003201543744 22.654182003124408 94-95 22.664636173464935 27.089509988615042 27.517513893798572 22.728339944121455 96-97 22.817814796298567 27.166228041215074 27.56025990523175 22.455697257254613 98-99 23.89977982422994 29.099670968703695 27.720576499138964 19.2799727079274 100 22.822690516210198 29.944829325677162 21.611605432981044 25.620874725131593 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2371.0 1 2135.0 2 2247.0 3 2773.0 4 3361.5 5 4404.5 6 5632.0 7 8458.0 8 11501.5 9 12459.5 10 12151.0 11 11641.0 12 12359.0 13 15183.0 14 21227.5 15 28298.0 16 32949.0 17 34610.0 18 33623.0 19 30698.5 20 27092.0 21 23968.0 22 23105.0 23 25643.0 24 31287.0 25 40584.0 26 53032.0 27 67299.0 28 81276.5 29 96745.0 30 112407.5 31 128353.5 32 147779.0 33 167305.5 34 186831.0 35 206013.0 36 227631.0 37 246855.0 38 259996.5 39 273495.5 40 287102.0 41 297884.5 42 304835.5 43 314554.0 44 324883.0 45 332801.0 46 339347.5 47 342390.0 48 344585.0 49 346359.0 50 345311.5 51 340263.0 52 331650.5 53 317777.5 54 300888.0 55 282631.5 56 261437.0 57 238116.5 58 213949.0 59 187468.5 60 158660.5 61 129940.0 62 103145.0 63 80061.0 64 60623.5 65 45215.5 66 33640.5 67 25483.5 68 19386.5 69 14442.0 70 10628.5 71 7708.5 72 5467.0 73 3651.5 74 2339.0 75 1468.0 76 942.5 77 575.0 78 351.0 79 214.0 80 124.5 81 77.5 82 58.0 83 48.0 84 35.0 85 22.0 86 12.5 87 6.0 88 5.5 89 4.5 90 2.5 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0037733316159836877 3 8.707688344577741E-4 4 6.047005794845653E-5 5 0.0 6 0.0 7 4.4747842881857837E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.62404187189884E-4 24-25 4.838210834471624E-4 26-27 9.07255339091824E-5 28-29 0.0027104656949122805 30-31 0.0019314912759564574 32-33 0.00420255999578895 34-35 0.008963830972412185 36-37 0.0014021107252935898 38-39 0.0 40-41 1.3542265873459222E-4 42-43 6.188330961346076E-4 44-45 1.681866273566762E-4 46-47 3.76655495064683E-5 48-49 0.004099346913305645 50-51 0.003542385244716701 52-53 3.7196790840457E-4 54-55 0.002963481960885008 56-57 0.0400911898959795 58-59 0.0604917580143551 60-61 0.02850503256482022 62-63 0.009974425811764553 64-65 9.521197739855398E-4 66-67 1.2845410554532992E-4 68-69 0.0012412626532916752 70-71 0.011004397285582003 72-73 0.016149085917302793 74-75 0.009768897301578464 76-77 0.011927294659928311 78-79 0.002510988965130852 80-81 0.013882359145204 82-83 0.043272009979043485 84-85 0.023391572350647382 86-87 0.003455144732750487 88-89 1.3481773653153958E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 58.0 20-21 310.0 22-23 553.0 24-25 663.0 26-27 1794.0 28-29 4428.0 30-31 12187.0 32-33 16071.0 34-35 22407.0 36-37 35467.0 38-39 41696.0 40-41 41692.0 42-43 49638.0 44-45 60915.0 46-47 62187.0 48-49 57530.0 50-51 52140.0 52-53 51004.0 54-55 55730.0 56-57 58243.0 58-59 58751.0 60-61 57053.0 62-63 56269.0 64-65 60314.0 66-67 63793.0 68-69 65850.0 70-71 64799.0 72-73 61557.0 74-75 62845.0 76-77 66323.0 78-79 68416.0 80-81 68489.0 82-83 65530.0 84-85 63744.0 86-87 67196.0 88-89 69900.0 90-91 71637.0 92-93 71182.0 94-95 82684.0 96-97 260539.0 98-99 578402.0 100-101 5558569.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.2896299206125 #Duplication Level Percentage of deduplicated Percentage of total 1 90.25592157963888 76.97894149671222 2 6.7560266914416784 11.524380324936816 3 1.6519945433004728 4.226940096869057 4 0.5809493285074172 1.9819581292410375 5 0.2867954636860226 1.2230339480345667 6 0.1511779625597246 0.7736347487322675 7 0.08644308613589102 0.5160889178008041 8 0.0595643604003135 0.40641778040005794 9 0.03444062991062374 0.26436857213788884 >10 0.1326188085274449 1.7431736371593114 >50 0.003106025700530368 0.1786392081183987 >100 8.900953607344729E-4 0.11705815615434387 >500 2.380828100185241E-5 0.01484368216732271 >1k 4.761654935843102E-5 0.050521301535844096 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2094011589691307E-5 2 0.0 2.4188023179382614E-5 0.0 2.4188023179382614E-5 1.2094011589691307E-5 3 0.0 2.4188023179382614E-5 0.0 2.4188023179382614E-5 1.2094011589691307E-5 4 0.0 6.0470057948456535E-5 0.0 2.4188023179382614E-5 1.2094011589691307E-5 5 0.0 7.256406953814784E-5 0.0 4.837604635876523E-5 1.2094011589691307E-5 6 7.256406953814784E-5 7.256406953814784E-5 0.0 4.837604635876523E-5 1.2094011589691307E-5 7 7.256406953814784E-5 7.256406953814784E-5 0.0 6.0470057948456535E-5 1.2094011589691307E-5 8 7.256406953814784E-5 7.256406953814784E-5 0.0 7.256406953814784E-5 3.628203476907392E-5 9 8.465808112783915E-5 2.660682549732087E-4 0.0 7.256406953814784E-5 3.628203476907392E-5 10-11 1.0884610430722176E-4 2.660682549732087E-4 0.0 9.07050869226848E-5 3.628203476907392E-5 12-13 1.2094011589691307E-4 2.660682549732087E-4 0.0 9.675209271753046E-5 4.837604635876523E-5 14-15 1.3303412748660436E-4 3.688673534855848E-4 0.0 1.0279909851237612E-4 7.256406953814784E-5 16-17 2.1769220861444353E-4 3.870083708701218E-4 0.0 1.3303412748660436E-4 7.256406953814784E-5 18-19 2.2373921440928919E-4 4.2933741143404136E-4 0.0 1.7536316805052396E-4 8.465808112783915E-5 20-21 2.5397424338351746E-4 4.7166645199796096E-4 0.0 1.8745717964021525E-4 8.465808112783915E-5 22-23 2.9025627815259137E-4 5.321365099464175E-4 0.0 2.2373921440928919E-4 8.465808112783915E-5 24-25 2.9025627815259137E-4 5.623715389206457E-4 0.0 2.660682549732087E-4 8.465808112783915E-5 26-27 2.9025627815259137E-4 5.684185447154914E-4 0.0 3.1444430133197395E-4 9.07050869226848E-5 28-29 2.9025627815259137E-4 5.684185447154914E-4 0.0 4.777134577928066E-4 9.675209271753046E-5 30-31 2.9025627815259137E-4 7.014526722020957E-4 0.0 0.0010945080488670633 9.675209271753046E-5 32-33 2.9025627815259137E-4 7.195936895866327E-4 0.0 0.0024853193816815637 1.0884610430722176E-4 34-35 2.96303283947437E-4 8.284397938938545E-4 0.0 0.004118010946289889 1.0884610430722176E-4 36-37 3.1444430133197395E-4 9.372858982010762E-4 0.0 0.007002432710431266 1.0884610430722176E-4 38-39 3.507263361010479E-4 9.796149387649958E-4 0.0 0.011471169992822204 1.0884610430722176E-4 40-41 3.870083708701218E-4 0.0010521790083031436 0.0 0.016036659367930674 1.0884610430722176E-4 42-43 3.991023824598131E-4 0.0010884610430722174 0.0 0.020450973598168 1.1489311010206741E-4 44-45 4.2329040563919573E-4 0.001239636187943359 0.0 0.02556674050060742 1.2094011589691307E-4 46-47 4.2329040563919573E-4 0.0013545292980454264 0.0 0.03088205859427675 1.2094011589691307E-4 48-49 4.2933741143404136E-4 0.0013666233096351176 0.0 0.035979684479331635 1.3303412748660436E-4 50-51 4.474784288185783E-4 0.0015419864776856414 0.0 0.041512694781615414 1.3303412748660436E-4 52-53 4.474784288185783E-4 0.0015722215066598698 0.0 0.04687034191584866 1.5117514487114132E-4 54-55 4.474784288185783E-4 0.001584315518249561 0.0 0.05257266838038811 1.7536316805052396E-4 56-57 4.474784288185783E-4 0.0016085035414289438 0.0 0.05857734513466985 1.814101738453696E-4 58-59 4.474784288185783E-4 0.0016266445588134807 0.0 0.06465458595848972 1.935041854350609E-4 60-61 4.474784288185783E-4 0.001693161622556783 0.0 0.07096161300251375 2.055981970247522E-4 62-63 4.53525434613424E-4 0.0017294436573258567 0.0 0.07717793495961507 2.2978622020413482E-4 64-65 4.6561944620311527E-4 0.0019108538311712264 0.0 0.08307376560958958 2.2978622020413482E-4 66-67 4.837604635876523E-4 0.0019108538311712264 0.0 0.08914495942761462 2.2978622020413482E-4 68-69 4.837604635876523E-4 0.0019592298775299916 0.0 0.09476262781102623 2.479272375886718E-4 70-71 4.837604635876523E-4 0.001971323889119683 0.0 0.09922531808762233 2.5397424338351746E-4 72-73 5.321365099464175E-4 0.0019955119122990654 0.0 0.10293213263986271 2.660682549732087E-4 74-75 5.321365099464175E-4 0.002092264005016596 0.0 0.10591330649672162 2.660682549732087E-4 76-77 5.381835157412631E-4 0.002164828074554744 0.0 0.10867678814496609 2.660682549732087E-4 78-79 5.442305215361088E-4 0.0021890160977341266 0.0 0.11067834706305998 2.660682549732087E-4 80-81 5.442305215361088E-4 0.0021890160977341266 0.0 0.11132537668310848 2.7211526076805436E-4 82-83 5.442305215361088E-4 0.0022071571151186633 0.0 0.11174262008295283 2.7816226656290005E-4 84-85 5.623715389206457E-4 0.002213204120913509 0.0 0.11194821827997758 2.8420927235774573E-4 86-87 5.684185447154914E-4 0.002213204120913509 0.0 0.1120570643842848 2.9025627815259137E-4 88 5.684185447154914E-4 0.0023462382484001135 0.0 0.11206311139007964 2.9025627815259137E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12120 0.0 49.14449 1 GTATCAA 21975 0.0 37.139465 1 TCAACGC 26825 0.0 31.129517 4 ATCAACG 27095 0.0 30.835394 3 CAACGCA 27340 0.0 30.543135 5 TATCAAC 28350 0.0 29.623533 2 AACGCAG 28345 0.0 29.42981 6 ACGCAGA 32705 0.0 25.506435 7 CGCAGAG 33795 0.0 24.696512 8 GCAGAGT 38575 0.0 21.692078 9 TGGTATC 5875 0.0 21.552357 2 GTGGTAT 6040 0.0 21.462725 1 GAGTACT 21755 0.0 20.84508 12-13 CAGAGTA 37225 0.0 19.407167 10-11 TACATGG 28190 0.0 19.356947 2 GTACATG 27825 0.0 19.161997 1 AGAGTAC 34495 0.0 18.839413 10-11 GTACTTT 23900 0.0 18.839111 14-15 ACATGGG 28025 0.0 18.732468 3 AGTACTT 23690 0.0 17.351826 12-13 >>END_MODULE