##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139591_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6454384 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.644480247843948 18.0 18.0 30.0 18.0 33.0 2 30.364227012213714 31.0 29.0 33.0 27.0 33.0 3 31.479798846799323 33.0 31.0 33.0 29.0 33.0 4 32.54900018344121 33.0 33.0 33.0 31.0 34.0 5 33.02632226406114 33.0 33.0 34.0 33.0 34.0 6 37.06865349195213 38.0 38.0 38.0 36.0 38.0 7 37.16659436438861 38.0 38.0 38.0 36.0 38.0 8 37.105501470008605 38.0 38.0 38.0 36.0 38.0 9 37.337223815626714 38.0 38.0 38.0 37.0 38.0 10-11 37.37146945394014 38.0 38.0 38.0 37.0 38.0 12-13 37.39225656546 38.0 38.0 38.0 37.0 38.0 14-15 37.41571829317871 38.0 38.0 38.0 37.0 38.0 16-17 37.43302815574654 38.0 38.0 38.0 37.0 38.0 18-19 37.4564572699734 38.0 38.0 38.0 37.0 38.0 20-21 37.47421601603071 38.0 38.0 38.0 37.0 38.0 22-23 37.490567298561395 38.0 38.0 38.0 37.0 38.0 24-25 37.50503707883854 38.0 38.0 38.0 37.0 38.0 26-27 37.47986559441232 38.0 38.0 38.0 37.0 38.0 28-29 37.452956291262424 38.0 38.0 38.0 37.0 38.0 30-31 37.4612049018491 38.0 38.0 38.0 37.0 38.0 32-33 37.449015146555624 38.0 38.0 38.0 37.0 38.0 34-35 37.415997259605625 38.0 38.0 38.0 37.0 38.0 36-37 37.39691184870862 38.0 38.0 38.0 37.0 38.0 38-39 37.38468774122224 38.0 38.0 38.0 37.0 38.0 40-41 37.370646437877085 38.0 38.0 38.0 37.0 38.0 42-43 37.34424948307283 38.0 38.0 38.0 37.0 38.0 44-45 37.30876508987349 38.0 38.0 38.0 37.0 38.0 46-47 37.26358334887731 38.0 38.0 38.0 37.0 38.0 48-49 37.20316728871981 38.0 38.0 38.0 37.0 38.0 50-51 37.12002333767642 38.0 38.0 38.0 37.0 38.0 52-53 37.14019426914594 38.0 38.0 38.0 37.0 38.0 54-55 37.124171667666616 38.0 38.0 38.0 36.5 38.0 56-57 37.07607587062465 38.0 38.0 38.0 36.0 38.0 58-59 37.063702691084856 38.0 38.0 38.0 36.0 38.0 60-61 37.08488397120914 38.0 38.0 38.0 36.0 38.0 62-63 37.087706845689894 38.0 38.0 38.0 36.0 38.0 64-65 37.032549373344466 38.0 38.0 38.0 36.0 38.0 66-67 37.07578892987045 38.0 38.0 38.0 36.0 38.0 68-69 37.09076554034429 38.0 38.0 38.0 36.0 38.0 70-71 37.0733092209217 38.0 38.0 38.0 36.0 38.0 72-73 37.0702304031039 38.0 38.0 38.0 36.0 38.0 74-75 37.02784715435645 38.0 38.0 38.0 36.0 38.0 76-77 37.033624725905256 38.0 38.0 38.0 36.0 38.0 78-79 37.035818371752114 38.0 38.0 38.0 36.0 38.0 80-81 37.03425713919379 38.0 38.0 38.0 36.0 38.0 82-83 36.98503228521162 38.0 38.0 38.0 36.0 38.0 84-85 36.96922196340535 38.0 38.0 38.0 36.0 38.0 86-87 36.939725405673485 38.0 38.0 38.0 35.5 38.0 88-89 36.94715312620424 38.0 38.0 38.0 36.0 38.0 90-91 36.936311871354356 38.0 38.0 38.0 35.0 38.0 92-93 36.920001683620114 38.0 38.0 38.0 35.0 38.0 94-95 36.90522120400966 38.0 38.0 38.0 35.0 38.0 96-97 36.8858339137829 38.0 38.0 38.0 35.0 38.0 98-99 36.920882030364425 38.0 38.0 38.0 35.0 38.0 100 35.456102772875056 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 12.0 21 50.0 22 309.0 23 944.0 24 2317.0 25 4922.0 26 9024.0 27 15591.0 28 25638.0 29 38314.0 30 50945.0 31 65444.0 32 83945.0 33 111574.0 34 167289.0 35 303107.0 36 946955.0 37 4627999.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.17028054110198 19.52378414423437 16.392331165917614 22.913604148746032 2 14.83746875829413 20.870970185988376 41.67345691034539 22.618104145372104 3 18.41688121279335 25.721086471811216 30.669986612073803 25.192045703321636 4 12.854873522262489 17.583989903285786 38.18996008445122 31.371176490000508 5 13.638977786261245 37.14275444411116 35.24395201772935 13.974315751898244 6 30.55831509250147 37.211808284105814 18.38844729411823 13.84142932927449 7 26.965399085080456 32.486228641883955 22.718394977145604 17.82997729588999 8 24.531667158322158 36.57600787309835 20.798173768402993 18.0941512001765 9 25.781035029833987 16.927982592916692 21.333422368424316 35.957560008825006 10-11 24.510170141720728 26.669222035751204 28.41240155528397 20.408206267244093 12-13 25.29354466669476 24.313280709669584 28.73121586816031 21.66195875547535 14-15 22.400449059120124 25.570333280449383 26.69984463273335 25.329373027697144 16-17 21.779607472998197 28.629811923182753 27.413901930842666 22.176678672976383 18-19 21.76550852877672 27.675173959281008 29.39923469071564 21.160082821226627 20-21 22.64382235778045 26.749767867897038 29.416486592889484 21.189923181433027 22-23 22.37787045207514 26.568775028451768 29.282279488154845 21.771075031318247 24-25 22.042357063370257 26.78690011405535 29.38469070514348 21.786052117430913 26-27 21.941230559687444 26.912351506746507 29.351781275916316 21.794636657649736 28-29 21.91041362670337 26.882678155767696 29.405458552733204 21.801449664795726 30-31 22.15345335934887 26.828495279430115 29.291208449915867 21.726842911305148 32-33 21.93203274697041 26.969514008668625 29.23379259656868 21.864660647792284 34-35 22.11806361984936 26.93643418977721 29.21885298780838 21.72664920256505 36-37 22.094081339364358 26.80639934801977 29.199411441364827 21.900107871251045 38-39 21.954756652523137 27.015898339167073 29.261339833604072 21.768005174705717 40-41 22.214308939390435 26.886551162720462 29.09413742885596 21.80500246903315 42-43 22.074639758285773 26.97800195127975 28.903669974769453 22.043688315665023 44-45 22.173830587980518 27.067008940034302 28.74219286500602 22.01696760697916 46-47 22.22879548869175 27.061303677558108 28.50185771977589 22.208043113974256 48-49 22.19773716989044 27.18273180757051 28.43731277347391 22.182218249065137 50-51 22.203074993702547 27.372117802607416 28.2392772723212 22.185529931368837 52-53 22.33931850427989 27.298339483006483 28.11676224039698 22.245579772316642 54-55 22.373745009371387 27.200453654304553 28.14045674962126 22.2853445867028 56-57 22.333790013697136 27.342470651683097 28.097818772771937 22.225920561847825 58-59 22.279387536219257 27.29289931691243 28.198340570664683 22.229372576203634 60-61 22.328783335211924 27.311525288047523 28.204138635159577 22.155552741580983 62-63 22.325021131164476 27.335697491679966 28.223397971208307 22.115883405947244 64-65 22.289856461751764 27.2242948318421 28.22724758131457 22.258601125091566 66-67 22.354397756400466 27.228554639318226 28.12934169762391 22.287705906657393 68-69 22.2675281043316 27.263344879153774 28.22672290294331 22.24240411357131 70-71 22.284796676353047 26.99811645965644 28.260159547450346 22.456927316540167 72-73 22.378926647096417 27.046865354195347 28.214102328668943 22.36010567003929 74-75 22.17540325996805 27.313695784685876 28.133940484316017 22.37696047103006 76-77 22.33402719558184 27.216766402249366 28.03025705306203 22.418949349106768 78-79 22.285747186811143 27.187856709768703 28.02094704848524 22.505449054934918 80-81 22.29331089665721 27.290576248572428 27.96479907887039 22.45131377589998 82-83 22.41691090028553 27.258197929423922 27.98730731345177 22.33758385683878 84-85 22.468923587252007 27.253790069544593 27.89077449081677 22.386511852386633 86-87 22.318693869550064 27.347097152649958 27.94424632830926 22.389962649490723 88-89 22.410580286913774 27.290268214846492 27.904295143371993 22.394856354867738 90-91 22.458994179157585 27.350727330373303 27.85610185663419 22.33417663383492 92-93 22.483320704242896 27.36825100324308 27.816967340692 22.33146095182202 94-95 22.362991183135655 27.375383462393216 27.837968939058598 22.423656415412527 96-97 22.51805999904579 27.50000048290059 27.838822850623973 22.14311666742965 98-99 23.544446131285547 29.407117987491056 28.070900016849876 18.977535864373525 100 22.472500271543776 30.282275539050197 21.94613496816273 25.299089221243293 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1708.0 1 1564.5 2 1688.5 3 2124.0 4 2735.0 5 3873.0 6 5043.5 7 7064.5 8 9185.5 9 9907.5 10 9625.0 11 9330.5 12 10218.0 13 12836.0 14 18219.5 15 24410.0 16 28691.5 17 30465.0 18 29338.0 19 26172.0 20 22446.0 21 19405.5 22 18524.5 23 20363.0 24 24598.0 25 31845.0 26 41857.0 27 53276.0 28 65041.0 29 78174.5 30 92101.0 31 105887.5 32 122748.5 33 140105.0 34 156210.0 35 171916.0 36 188898.5 37 204018.5 38 213856.0 39 222884.5 40 232143.0 41 237587.5 42 239056.5 43 244224.0 44 250550.5 45 254996.5 46 256772.0 47 256611.0 48 258557.5 49 259218.0 50 256444.5 51 250437.0 52 241563.5 53 229167.0 54 214682.5 55 199817.0 56 183370.0 57 165237.5 58 146767.0 59 128151.5 60 108187.0 61 87301.5 62 68103.5 63 52112.0 64 38922.0 65 28693.0 66 21143.5 67 15815.5 68 11936.5 69 8688.5 70 6138.5 71 4265.0 72 2850.0 73 1832.5 74 1097.0 75 614.5 76 357.5 77 220.0 78 146.5 79 91.0 80 55.0 81 36.0 82 27.0 83 16.5 84 9.5 85 6.5 86 4.5 87 4.5 88 5.5 89 6.0 90 5.5 91 3.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004198696575846742 3 9.450940631979751E-4 4 1.0845341708829223E-4 5 0.0 6 0.0 7 7.126938837230632E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.746774068975262E-6 22-23 6.352702672132676E-4 24-25 5.423430039030876E-4 26-27 7.748495610206039E-5 28-29 0.0029993447942922237 30-31 0.0021014851373820707 32-33 0.004541471318706638 34-35 0.009593942226275071 36-37 0.0015348725377956518 38-39 0.0 40-41 1.6473267886870383E-4 42-43 7.875623119301199E-4 44-45 2.3745475101840389E-4 46-47 6.370640520920904E-5 48-49 0.004077856781023177 50-51 0.003334900629224862 52-53 2.9953559838914615E-4 54-55 0.0027420955028738705 56-57 0.04071790510960612 58-59 0.061613914176574816 60-61 0.02864684950476966 62-63 0.010310478661056922 64-65 9.636270991045222E-4 66-67 1.434049860563958E-4 68-69 0.0014358787526988573 70-71 0.010794454749063596 72-73 0.01604097243824592 74-75 0.00970501616402155 76-77 0.011900120945158568 78-79 0.002534379923331034 80-81 0.012987779995558502 82-83 0.04243238383460968 84-85 0.023708941207263634 86-87 0.0039038590149201467 88-89 6.45935758366875E-5 90-91 9.319609773027427E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 46.0 20-21 266.0 22-23 515.0 24-25 500.0 26-27 1131.0 28-29 2489.0 30-31 6827.0 32-33 8798.0 34-35 12019.0 36-37 18863.0 38-39 23060.0 40-41 24308.0 42-43 29636.0 44-45 37253.0 46-47 38570.0 48-49 35115.0 50-51 31203.0 52-53 30563.0 54-55 34052.0 56-57 35305.0 58-59 35752.0 60-61 35729.0 62-63 35914.0 64-65 38815.0 66-67 41896.0 68-69 43799.0 70-71 43737.0 72-73 42643.0 74-75 44040.0 76-77 47175.0 78-79 48943.0 80-81 49262.0 82-83 47539.0 84-85 47458.0 86-87 49657.0 88-89 52714.0 90-91 54377.0 92-93 53752.0 94-95 64281.0 96-97 205982.0 98-99 461537.0 100-101 4538863.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.75313819075612 #Duplication Level Percentage of deduplicated Percentage of total 1 90.15515413392842 77.31087391055681 2 6.9805171175979215 11.972024980566264 3 1.6278548951144882 4.187809973257545 4 0.5835543453761926 2.0016646568344343 5 0.254737979911201 1.092229059687964 6 0.13159325477416173 0.677072073697204 7 0.07652971310009105 0.4593864144219718 8 0.04529056748204051 0.3107046633620148 9 0.03423812654420383 0.26424241172439356 >10 0.10777067605206704 1.4134749064015844 >50 0.001823000297477286 0.10267174831673753 >100 8.507424849407163E-4 0.14900636402358905 >500 5.696489565933238E-5 0.031800819187546014 >1k 2.848244117181168E-5 0.027038017961948088 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5493345298327463E-5 2 0.0 3.0986690596654926E-5 0.0 1.5493345298327463E-5 1.5493345298327463E-5 3 0.0 3.0986690596654926E-5 0.0 1.5493345298327463E-5 1.5493345298327463E-5 4 0.0 2.01413488878257E-4 0.0 1.5493345298327463E-5 1.5493345298327463E-5 5 0.0 2.1690683417658447E-4 0.0 1.5493345298327463E-5 1.5493345298327463E-5 6 0.0 2.3240017947491194E-4 0.0 3.0986690596654926E-5 3.0986690596654926E-5 7 0.0 2.3240017947491194E-4 0.0 3.0986690596654926E-5 3.0986690596654926E-5 8 0.0 2.3240017947491194E-4 0.0 3.0986690596654926E-5 3.0986690596654926E-5 9 0.0 3.718402871598591E-4 0.0 3.0986690596654926E-5 3.0986690596654926E-5 10-11 1.5493345298327463E-5 3.718402871598591E-4 0.0 5.422670854414612E-5 3.0986690596654926E-5 12-13 1.5493345298327463E-5 3.7958695980902285E-4 0.0 7.746672649163731E-5 3.0986690596654926E-5 14-15 2.3240017947491195E-5 4.725470315989876E-4 0.0 7.746672649163731E-5 6.197338119330985E-5 16-17 3.0986690596654926E-5 4.957870495464788E-4 0.0 9.296007178996477E-5 7.746672649163731E-5 18-19 3.0986690596654926E-5 5.345204127922974E-4 0.0 1.3944010768494717E-4 7.746672649163731E-5 20-21 3.0986690596654926E-5 5.732537760381161E-4 0.0 1.9366681622909327E-4 7.746672649163731E-5 22-23 3.0986690596654926E-5 6.274804845822623E-4 0.0 2.246535068257482E-4 7.746672649163731E-5 24-25 3.0986690596654926E-5 7.126938837230633E-4 0.0 2.478935247732394E-4 7.746672649163731E-5 26-27 3.0986690596654926E-5 7.591739196180457E-4 0.0 2.943735606682218E-4 7.746672649163731E-5 28-29 3.0986690596654926E-5 7.824139375655368E-4 0.0 4.8029370424815135E-4 7.746672649163731E-5 30-31 3.0986690596654926E-5 9.141073726013203E-4 0.0 9.83827426443794E-4 7.746672649163731E-5 32-33 3.0986690596654926E-5 9.141073726013203E-4 0.0 0.001990894870835079 7.746672649163731E-5 34-35 3.0986690596654926E-5 9.760807537946301E-4 0.0 0.003253602512648767 7.746672649163731E-5 36-37 3.0986690596654926E-5 0.00103805413498794 0.0 0.0053529508005721385 7.746672649163731E-5 38-39 3.0986690596654926E-5 0.0010845341708829222 0.0 0.008436126514939303 7.746672649163731E-5 40-41 3.0986690596654926E-5 0.0011620008973745597 0.0 0.01175170240878138 7.746672649163731E-5 42-43 3.0986690596654926E-5 0.0011929875879712146 0.0 0.015090518320570949 8.521339914080104E-5 44-45 3.0986690596654926E-5 0.0013091876777086707 0.0 0.0187314544656779 9.296007178996478E-5 46-47 3.0986690596654926E-5 0.0013944010768494716 0.0 0.023348471364579487 9.296007178996478E-5 48-49 3.0986690596654926E-5 0.0013944010768494716 0.0 0.027818301483146957 9.296007178996478E-5 50-51 3.0986690596654926E-5 0.0015803212204294013 0.0 0.032497291763241856 9.296007178996478E-5 52-53 3.0986690596654926E-5 0.0016035612383768923 0.0 0.037362202186916674 1.1620008973745597E-4 54-55 3.0986690596654926E-5 0.0016190545836752197 0.0 0.04206443248495906 1.3944010768494717E-4 56-57 3.0986690596654926E-5 0.001642294601622711 0.0 0.046836382836843916 1.3944010768494717E-4 58-59 5.422670854414612E-5 0.0016577879469210385 0.0 0.05138367968190303 1.3944010768494717E-4 60-61 6.197338119330985E-5 0.0016810279648685296 0.0 0.056147883361138726 1.3944010768494717E-4 62-63 6.197338119330985E-5 0.0017507480187110031 0.0 0.06069518020619784 1.5493345298327462E-4 64-65 6.197338119330985E-5 0.0019521615075892603 0.0 0.06472344998376298 1.5493345298327462E-4 66-67 6.197338119330985E-5 0.001967654852887588 0.0 0.06910806670318964 1.5493345298327462E-4 68-69 6.197338119330985E-5 0.0020063882161334063 0.0 0.07377931031063537 1.5493345298327462E-4 70-71 6.197338119330985E-5 0.0020218815614317337 0.0 0.07808646030357042 1.5493345298327462E-4 72-73 6.197338119330985E-5 0.0020296282340808974 0.0 0.08173514312132653 2.01413488878257E-4 74-75 6.197338119330985E-5 0.00207610826997588 0.0 0.08460915867416627 2.01413488878257E-4 76-77 6.197338119330985E-5 0.0022000550323624996 0.0 0.08739796082786522 2.0916016152742073E-4 78-79 6.197338119330985E-5 0.0022620284135558095 0.0 0.0891951888824712 2.1690683417658447E-4 80-81 6.197338119330985E-5 0.0022620284135558095 0.0 0.08984590938500095 2.3240017947491194E-4 82-83 6.197338119330985E-5 0.002269775086204973 0.0 0.09025648303540663 2.478935247732394E-4 84-85 6.197338119330985E-5 0.002277521758854137 0.0 0.09055085659607484 2.478935247732394E-4 86-87 6.197338119330985E-5 0.002308508449450792 0.0 0.09065156334051398 2.478935247732394E-4 88 6.197338119330985E-5 0.0024634419024340665 0.0 0.09065156334051398 2.478935247732394E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9490 0.0 52.01766 1 GTATCAA 17760 0.0 37.990437 1 TCAACGC 22475 0.0 30.38945 4 ATCAACG 22700 0.0 30.030529 3 CAACGCA 22925 0.0 29.773806 5 TATCAAC 23185 0.0 29.611696 2 AACGCAG 23605 0.0 28.897526 6 ACGCAGA 27005 0.0 25.243017 7 GTGGTAT 4955 0.0 25.21621 1 TGGTATC 4660 0.0 25.119095 2 CGCAGAG 27520 0.0 24.802488 8 GCAGAGT 31695 0.0 21.604555 9 GTACATG 21945 0.0 20.616869 1 GAGTACT 18770 0.0 20.611307 12-13 TACATGG 22430 0.0 20.581532 2 ACATGGG 22530 0.0 20.158443 3 AGAGTAC 28995 0.0 19.345156 10-11 CAGAGTA 30865 0.0 19.181536 10-11 GTACTTT 20245 0.0 18.990889 14-15 CATGGGG 15195 0.0 18.175858 4 >>END_MODULE