##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139589_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7177798 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.77977284955637 33.0 31.0 33.0 25.0 34.0 2 32.09434383636876 33.0 31.0 33.0 29.0 34.0 3 32.113871412931935 33.0 31.0 33.0 29.0 34.0 4 32.826031465360266 33.0 33.0 34.0 31.0 34.0 5 32.92741548313285 33.0 33.0 34.0 31.0 34.0 6 36.56254021080002 38.0 37.0 38.0 34.0 38.0 7 37.06350749909652 38.0 38.0 38.0 36.0 38.0 8 36.9516215140075 38.0 38.0 38.0 35.0 38.0 9 37.1461223901815 38.0 38.0 38.0 36.0 38.0 10-11 37.28229660405601 38.0 38.0 38.0 36.0 38.0 12-13 37.295374430988446 38.0 38.0 38.0 37.0 38.0 14-15 37.37810091618627 38.0 38.0 38.0 37.0 38.0 16-17 37.39223554354692 38.0 38.0 38.0 37.0 38.0 18-19 37.40898977653035 38.0 38.0 38.0 37.0 38.0 20-21 37.424621644287264 38.0 38.0 38.0 37.0 38.0 22-23 37.43871529332151 38.0 38.0 38.0 37.0 38.0 24-25 37.452174707986856 38.0 38.0 38.0 37.0 38.0 26-27 37.429119654431446 38.0 38.0 38.0 37.0 38.0 28-29 37.40287686918826 38.0 38.0 38.0 37.0 38.0 30-31 37.407255714170454 38.0 38.0 38.0 37.0 38.0 32-33 37.39292930652688 38.0 38.0 38.0 37.0 38.0 34-35 37.36508917464051 38.0 38.0 38.0 37.0 38.0 36-37 37.3484060841133 38.0 38.0 38.0 37.0 38.0 38-39 37.320097124201865 38.0 38.0 38.0 37.0 38.0 40-41 37.32220667343277 38.0 38.0 38.0 37.0 38.0 42-43 37.29395191143665 38.0 38.0 38.0 37.0 38.0 44-45 37.25433291895803 38.0 38.0 38.0 37.0 38.0 46-47 37.20958972831218 38.0 38.0 38.0 37.0 38.0 48-49 37.152652006868934 38.0 38.0 38.0 36.5 38.0 50-51 37.07320340827671 38.0 38.0 38.0 36.0 38.0 52-53 37.09264538596297 38.0 38.0 38.0 36.0 38.0 54-55 37.06852386485055 38.0 38.0 38.0 36.0 38.0 56-57 37.01172110738176 38.0 38.0 38.0 36.0 38.0 58-59 36.99316154080769 38.0 38.0 38.0 36.0 38.0 60-61 37.00956984588242 38.0 38.0 38.0 36.0 38.0 62-63 37.00662214826403 38.0 38.0 38.0 36.0 38.0 64-65 36.94510570475335 38.0 38.0 38.0 36.0 38.0 66-67 36.98527158375394 38.0 38.0 38.0 36.0 38.0 68-69 36.993937035151326 38.0 38.0 38.0 36.0 38.0 70-71 36.97117440564626 38.0 38.0 38.0 36.0 38.0 72-73 36.9609171921325 38.0 38.0 38.0 36.0 38.0 74-75 36.913656636880866 38.0 38.0 38.0 35.5 38.0 76-77 36.91440460301339 38.0 38.0 38.0 35.0 38.0 78-79 36.91053676780956 38.0 38.0 38.0 35.0 38.0 80-81 36.905202381653694 38.0 38.0 38.0 35.0 38.0 82-83 36.84160581839306 38.0 38.0 38.0 35.0 38.0 84-85 36.825043783304224 38.0 38.0 38.0 35.0 38.0 86-87 36.79134937468051 38.0 38.0 38.0 35.0 38.0 88-89 36.797452877871166 38.0 38.0 38.0 35.0 38.0 90-91 36.782194241493144 38.0 38.0 38.0 35.0 38.0 92-93 36.75638991086416 38.0 38.0 38.0 35.0 38.0 94-95 36.73528507919178 38.0 38.0 38.0 34.5 38.0 96-97 36.713205901907244 38.0 38.0 38.0 34.0 38.0 98-99 36.75105326016288 38.0 38.0 38.0 34.0 38.0 100 35.17445122911962 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 5.0 20 11.0 21 57.0 22 305.0 23 1037.0 24 2670.0 25 5725.0 26 10565.0 27 18074.0 28 29045.0 29 42618.0 30 58183.0 31 76086.0 32 98548.0 33 132185.0 34 196630.0 35 351071.0 36 974217.0 37 5180763.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.33627053868052 19.56540153400806 14.192764967751948 24.905562959559465 2 14.54116179714416 19.89406517539978 42.72728741979026 22.837485607665805 3 18.403097923989684 25.047529086574965 29.936943677022338 26.61242931241301 4 12.70305002042412 17.474728983358105 38.35132773495121 31.470893261266564 5 13.85749501448773 36.49388015656055 35.28640677823478 14.362218050716946 6 30.72759918849764 36.92452755009266 18.347771837546837 14.000101423862862 7 27.185079972999837 32.24767980428366 22.281374277540202 18.2858659451763 8 24.507947980703833 36.41627975599202 20.764947690085457 18.310824573218696 9 25.489237785738744 17.073578832951274 21.125016335093296 36.31216704621668 10-11 24.37078892440272 26.498572403402825 28.410384354644698 20.720254317549756 12-13 25.214780354643583 24.02620552988535 28.646570995728776 22.112443119742295 14-15 22.366546119018675 25.370719543793236 26.435704933462883 25.82702940372521 16-17 21.916359306851486 28.63676297382568 27.12648781701575 22.320389902307085 18-19 21.91236086610406 27.514531615406284 29.054704520801504 21.51840299768815 20-21 22.633442993134388 26.62064465919431 29.05886506355211 21.687047284119195 22-23 22.393183138028164 26.616597075382632 28.94258496137182 22.047634825217386 24-25 22.202063580680562 26.746167425367794 29.046224299212582 22.00554469473906 26-27 22.094625791645655 26.926341816993922 29.000811243859403 21.978221147501024 28-29 21.966767036704198 26.802585684615917 29.101208274915834 22.129439003764052 30-31 22.343130157042793 26.761749727695367 28.99404388804456 21.901076227217285 32-33 22.11711727475253 26.939086894839136 28.961283562889278 21.982512267519052 34-35 22.231695119770745 26.905722649197084 29.022987819617242 21.839594411414932 36-37 22.20695097435524 26.764081375877108 28.916805190973033 22.11216245879462 38-39 21.962416044265254 26.822982240667812 29.120515888132463 22.094085826934464 40-41 22.192698354854564 26.701830615699617 29.02263408267584 22.082836946769977 42-43 22.1680334158835 26.752406432139658 28.88967267911428 22.189887472862566 44-45 22.132146531530847 26.948189369865528 28.74272838902177 22.176935709581855 46-47 22.331657997980734 26.874337522539914 28.35460390240173 22.439400577077617 48-49 22.25725909965907 26.914511385174645 28.3402598114408 22.487969703725486 50-51 22.151279578536602 27.15704271895619 28.29797195279133 22.393705749715878 52-53 22.287486121449703 27.09744001000633 28.2928636198992 22.32221024864477 54-55 22.277860194419713 27.05338991171783 28.164232983423137 22.504516910439325 56-57 22.3407369932202 27.175407015332976 28.051068402113994 22.432787589332833 58-59 22.157237207948896 27.244727698448024 28.297816298020667 22.300218795582413 60-61 22.267539784691596 27.403207327304425 28.081611082078656 22.247641805925326 62-63 22.15634327028055 27.521237076086024 28.07110351314221 22.251316140491216 64-65 22.125470105378984 27.443171146763586 28.084854075229025 22.346504672628402 66-67 22.152635445317312 27.465970938909468 27.92887670821217 22.452516907561044 68-69 22.121094715950417 27.380738160808253 28.100920586617224 22.397246536624106 70-71 22.155956215813447 27.12227901519605 28.14500023849902 22.576764530491488 72-73 22.310652155170427 27.016492600229427 28.09952390323007 22.57333134137007 74-75 22.18756100735342 27.199294339978458 28.004267692630513 22.60887696003761 76-77 22.415544420444146 27.10417501897751 27.888221411390727 22.592059149187616 78-79 22.36665883627531 27.136305804011222 27.789991271565924 22.707044088147544 80-81 22.346343142286905 27.21226675730633 27.79134146414367 22.650048636263094 82-83 22.479029359414337 27.186387446838093 27.811909923107365 22.522673270640205 84-85 22.48290761652901 27.21192222904595 27.76469607273811 22.540474081686938 86-87 22.39553834067199 27.26044897678099 27.83380051972583 22.51021216282119 88-89 22.48765001166474 27.276970609289748 27.743196529141006 22.49218284990451 90-91 22.498639405540327 27.300820802359944 27.7092590693749 22.49128072272483 92-93 22.602816215615505 27.271339056915835 27.735219686428398 22.390625041040263 94-95 22.454126357405002 27.357894975834583 27.72229875763615 22.465679909124265 96-97 22.61295132905984 27.396601690944973 27.792733587144603 22.197713392850584 98-99 23.641787204618367 29.316129706608347 28.01513391170109 19.026949177072193 100 22.570407867964555 30.177874634881018 21.926531160753566 25.32518633640086 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1855.0 1 1649.0 2 1729.0 3 2183.5 4 2736.0 5 3835.0 6 5025.5 7 6677.0 8 8846.0 9 10021.0 10 9730.0 11 9355.0 12 10215.5 13 12829.5 14 18271.0 15 24609.5 16 29192.5 17 31681.5 18 31373.0 19 28685.5 20 25290.5 21 22601.5 22 22182.5 23 24610.5 24 29748.0 25 37888.5 26 48778.5 27 61018.0 28 74031.5 29 89207.0 30 104015.5 31 118654.5 32 136809.5 33 155395.5 34 172960.5 35 190080.0 36 209518.5 37 227433.5 38 240590.5 39 252669.0 40 264194.0 41 274133.0 42 279854.0 43 287390.0 44 298784.5 45 311220.0 46 314196.5 47 311851.5 48 312159.5 49 308470.0 50 303852.5 51 296238.5 52 285130.0 53 270908.5 54 253525.0 55 236457.0 56 217814.0 57 198076.0 58 178214.0 59 155117.5 60 130522.0 61 106851.0 62 85116.5 63 66375.5 64 50041.0 65 37039.5 66 27714.5 67 21318.0 68 16456.0 69 12222.5 70 8997.0 71 6517.5 72 4591.5 73 3059.5 74 1947.0 75 1244.0 76 792.5 77 489.0 78 323.5 79 232.0 80 164.0 81 110.5 82 75.0 83 54.5 84 38.5 85 24.0 86 15.0 87 12.5 88 11.5 89 7.5 90 3.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005099056841666483 3 0.0012260027378870233 4 1.3931849294170718E-4 5 0.0 6 0.0 7 8.777065055327554E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.409193570185547E-4 24-25 5.99181838101764E-4 26-27 1.254283727341016E-4 28-29 0.002614339898347493 30-31 0.001759137620477367 32-33 0.004220226390300394 34-35 0.009170858858656419 36-37 0.0013405967334737762 38-39 0.0 40-41 1.1446119146803418E-4 42-43 5.90841438909301E-4 44-45 2.470519616398059E-4 46-47 4.402146339817083E-5 48-49 0.004243846219307012 50-51 0.0030702935872996525 52-53 5.268045294051376E-4 54-55 0.0027140148543036468 56-57 0.04009795236891888 58-59 0.06203526021038386 60-61 0.02879366206990778 62-63 0.010450467642759146 64-65 7.664327124227524E-4 66-67 1.993835698049056E-4 68-69 0.001345138656812197 70-71 0.010727234903003985 72-73 0.01632737396521669 74-75 0.010216650251693944 76-77 0.01245466547832239 78-79 0.0027312606137590762 80-81 0.01330381332717612 82-83 0.04459866845429188 84-85 0.024755979569747167 86-87 0.0038208507602922083 88-89 7.096414908929047E-5 90-91 8.963072053508824E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 79.0 20-21 380.0 22-23 766.0 24-25 781.0 26-27 2546.0 28-29 6486.0 30-31 17549.0 32-33 22142.0 34-35 30143.0 36-37 45537.0 38-39 49860.0 40-41 49297.0 42-43 55101.0 44-45 65563.0 46-47 65581.0 48-49 59290.0 50-51 51149.0 52-53 47647.0 54-55 50927.0 56-57 51114.0 58-59 54495.0 60-61 55491.0 62-63 54051.0 64-65 57516.0 66-67 61075.0 68-69 62319.0 70-71 68300.0 72-73 54788.0 74-75 54307.0 76-77 55943.0 78-79 57771.0 80-81 56731.0 82-83 53648.0 84-85 53259.0 86-87 55170.0 88-89 57928.0 90-91 58362.0 92-93 57591.0 94-95 68212.0 96-97 219422.0 98-99 486562.0 100-101 4702919.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.28542434841647 #Duplication Level Percentage of deduplicated Percentage of total 1 91.03559885960576 79.46080877272907 2 6.483898875036694 11.31899729479596 3 1.4333758948066373 3.753384696869655 4 0.517787069749597 1.8078105642086677 5 0.2149833685370325 0.9382457275303444 6 0.10729697564742155 0.561927723041214 7 0.059355644021831314 0.3626617803143367 8 0.037941356751454276 0.26493819395242735 9 0.026655039837472704 0.2093936816913976 >10 0.08097112379877068 1.1170804746746161 >50 0.0016866559330004243 0.09876627903619073 >100 3.774830046373919E-4 0.05238558601383955 >500 4.776885770700358E-5 0.029520235212169926 >1k 2.3884411956176407E-5 0.024078989930078728 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3931849294170719E-5 0.0 2 0.0 1.3931849294170719E-5 0.0 1.3931849294170719E-5 0.0 3 0.0 1.3931849294170719E-5 0.0 1.3931849294170719E-5 0.0 4 0.0 5.5727397176682876E-5 0.0 4.179554788251216E-5 0.0 5 0.0 6.965924647085359E-5 0.0 4.179554788251216E-5 0.0 6 0.0 6.965924647085359E-5 0.0 6.965924647085359E-5 0.0 7 0.0 6.965924647085359E-5 0.0 6.965924647085359E-5 0.0 8 0.0 8.359109576502432E-5 0.0 8.359109576502432E-5 0.0 9 1.3931849294170719E-5 1.8111404082421935E-4 0.0 9.752294505919504E-5 0.0 10-11 2.7863698588341438E-5 1.8111404082421935E-4 0.0 1.2538664364753648E-4 0.0 12-13 2.7863698588341438E-5 2.0897773941256078E-4 0.0 1.3235256829462183E-4 0.0 14-15 2.7863698588341438E-5 3.204325337659266E-4 0.0 1.5325034223587791E-4 3.4829623235426796E-5 16-17 2.7863698588341438E-5 3.343643830600973E-4 0.0 1.74148116177134E-4 4.179554788251216E-5 18-19 3.4829623235426796E-5 3.343643830600973E-4 0.0 1.9504589011839005E-4 4.876147252959752E-5 20-21 5.5727397176682876E-5 3.343643830600973E-4 0.0 2.577392119421583E-4 5.5727397176682876E-5 22-23 6.965924647085359E-5 3.622280816484387E-4 1.3931849294170719E-5 3.343643830600973E-4 5.5727397176682876E-5 24-25 8.359109576502432E-5 3.622280816484387E-4 1.3931849294170719E-5 4.597510267076337E-4 5.5727397176682876E-5 26-27 8.359109576502432E-5 3.622280816484387E-4 1.3931849294170719E-5 5.43342122472658E-4 5.5727397176682876E-5 28-29 8.359109576502432E-5 3.622280816484387E-4 1.3931849294170719E-5 0.0011006160942394869 5.5727397176682876E-5 30-31 8.359109576502432E-5 4.1795547882512155E-4 1.3931849294170719E-5 0.003016245372187961 6.269332182376824E-5 32-33 8.359109576502432E-5 4.1795547882512155E-4 1.3931849294170719E-5 0.006624594339378177 7.662517111793896E-5 34-35 8.359109576502432E-5 5.363761978255726E-4 1.3931849294170719E-5 0.011521639366279184 1.1145479435336575E-4 36-37 9.752294505919504E-5 6.547969168260238E-4 1.3931849294170719E-5 0.019295611272426447 1.1145479435336575E-4 38-39 1.044888697062804E-4 7.174902386497921E-4 1.3931849294170719E-5 0.03985902083062243 1.1145479435336575E-4 40-41 1.1145479435336575E-4 8.637746562385846E-4 1.3931849294170719E-5 0.0622823322695902 1.1145479435336575E-4 42-43 1.1145479435336575E-4 8.846724301798407E-4 1.3931849294170719E-5 0.07482099663434386 1.1145479435336575E-4 44-45 1.1145479435336575E-4 9.89161299886121E-4 1.3931849294170719E-5 0.08931708582492848 1.1145479435336575E-4 46-47 1.1145479435336575E-4 0.0010797183202982308 1.3931849294170719E-5 0.10385497056339563 1.1145479435336575E-4 48-49 1.2538664364753648E-4 0.001086684244945316 1.3931849294170719E-5 0.11831623013074483 1.3931849294170718E-4 50-51 1.3931849294170718E-4 0.0012399345871811941 1.3931849294170719E-5 0.13149575956303033 1.3931849294170718E-4 52-53 1.3931849294170718E-4 0.0012538664364753647 1.3931849294170719E-5 0.17596622251002328 1.4628441758879254E-4 54-55 1.3931849294170718E-4 0.0012677982857695353 1.3931849294170719E-5 0.22960384229258055 1.602162668829633E-4 56-57 1.3931849294170718E-4 0.0012886960597107916 2.089777394125608E-5 0.3070788562174639 1.880799654713047E-4 58-59 1.3931849294170718E-4 0.001316559758299133 2.7863698588341438E-5 0.3554363051175305 2.0897773941256078E-4 60-61 1.3931849294170718E-4 0.0013722871554758158 2.7863698588341438E-5 0.37276752563947885 2.0897773941256078E-4 62-63 1.3931849294170718E-4 0.001393184929417072 2.7863698588341438E-5 0.38662274976253164 2.3684143800090224E-4 64-65 1.3931849294170718E-4 0.0015603671209471206 2.7863698588341438E-5 0.39400662988844215 2.3684143800090224E-4 66-67 1.5325034223587791E-4 0.0015742989702412912 2.7863698588341438E-5 0.400359553166584 2.3684143800090224E-4 68-69 1.5325034223587791E-4 0.001623060442770889 2.7863698588341438E-5 0.4069075223348442 2.3684143800090224E-4 70-71 1.5325034223587791E-4 0.00165092414135923 2.7863698588341438E-5 0.4120762384229815 2.3684143800090224E-4 72-73 1.5325034223587791E-4 0.0016578900660063156 2.7863698588341438E-5 0.4157542466366426 2.5077328729507296E-4 74-75 1.5325034223587791E-4 0.0016996856138888276 2.7863698588341438E-5 0.4190839586179494 2.5077328729507296E-4 76-77 1.5325034223587791E-4 0.0017484470864184251 2.7863698588341438E-5 0.4224902957703741 2.5077328729507296E-4 78-79 1.5325034223587791E-4 0.0017693448603596812 2.7863698588341438E-5 0.4246218687123823 2.5077328729507296E-4 80-81 1.5325034223587791E-4 0.0017763107850067668 2.7863698588341438E-5 0.4253323930263849 2.5077328729507296E-4 82-83 1.5325034223587791E-4 0.001783276709653852 2.7863698588341438E-5 0.4257921440530926 2.6470513658924367E-4 84-85 1.5325034223587791E-4 0.0017972085589480229 2.7863698588341438E-5 0.4260289854910935 2.6470513658924367E-4 86-87 1.5325034223587791E-4 0.0018111404082421935 2.7863698588341438E-5 0.42613347436079974 2.6470513658924367E-4 88 1.5325034223587791E-4 0.0018668678054188765 2.7863698588341438E-5 0.4261613380593881 2.6470513658924367E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11100 0.0 47.668182 1 GTATCAA 19285 0.0 36.81715 1 TCAACGC 22980 0.0 30.155346 4 ATCAACG 23125 0.0 30.003614 3 CAACGCA 23535 0.0 29.444223 5 TATCAAC 24135 0.0 29.08433 2 AACGCAG 24265 0.0 28.470917 6 ACGCAGA 27625 0.0 24.900434 7 CGCAGAG 28425 0.0 24.21423 8 GTGGTAT 5460 0.0 23.09922 1 TGGTATC 5470 0.0 22.20303 2 GCAGAGT 32540 0.0 21.256495 9 GAGTACT 19155 0.0 20.626348 12-13 GTACATG 22035 0.0 19.676426 1 CTTATAC 8045 0.0 19.16082 1 CAGAGTA 31550 0.0 19.097263 10-11 TACATGG 22340 0.0 18.780506 2 GTACTTT 21195 0.0 18.491022 14-15 AGAGTAC 29295 0.0 18.110518 10-11 ACATGGG 22390 0.0 17.90281 3 >>END_MODULE