##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139586_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6080230 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.884952049511284 33.0 31.0 33.0 25.0 34.0 2 32.143131756528945 33.0 32.0 33.0 29.0 34.0 3 32.13223282671873 33.0 31.0 33.0 30.0 34.0 4 32.82989640194532 33.0 33.0 34.0 31.0 34.0 5 32.938123228891016 33.0 33.0 34.0 31.0 34.0 6 36.576812225853296 38.0 37.0 38.0 34.0 38.0 7 37.070848964595086 38.0 38.0 38.0 36.0 38.0 8 36.97577509403427 38.0 38.0 38.0 35.0 38.0 9 37.152945365553606 38.0 38.0 38.0 36.0 38.0 10-11 37.28546707937035 38.0 38.0 38.0 36.5 38.0 12-13 37.29475809303267 38.0 38.0 38.0 37.0 38.0 14-15 37.377535635987456 38.0 38.0 38.0 37.0 38.0 16-17 37.392027357517726 38.0 38.0 38.0 37.0 38.0 18-19 37.4087750792322 38.0 38.0 38.0 37.0 38.0 20-21 37.424168998370284 38.0 38.0 38.0 37.0 38.0 22-23 37.436633270982504 38.0 38.0 38.0 37.0 38.0 24-25 37.444939546534385 38.0 38.0 38.0 37.0 38.0 26-27 37.4181873108872 38.0 38.0 38.0 37.0 38.0 28-29 37.396217838306896 38.0 38.0 38.0 37.0 38.0 30-31 37.39082127582705 38.0 38.0 38.0 37.0 38.0 32-33 37.380161563486496 38.0 38.0 38.0 37.0 38.0 34-35 37.34553974592609 38.0 38.0 38.0 37.0 38.0 36-37 37.324700705994765 38.0 38.0 38.0 37.0 38.0 38-39 37.27449951161421 38.0 38.0 38.0 37.0 38.0 40-41 37.30319166447366 38.0 38.0 38.0 37.0 38.0 42-43 37.27238752140718 38.0 38.0 38.0 37.0 38.0 44-45 37.21897710766906 38.0 38.0 38.0 37.0 38.0 46-47 37.159699203935205 38.0 38.0 38.0 37.0 38.0 48-49 37.09062744917807 38.0 38.0 38.0 36.0 38.0 50-51 37.010542057993845 38.0 38.0 38.0 36.0 38.0 52-53 37.0291077778365 38.0 38.0 38.0 36.0 38.0 54-55 37.00432965907443 38.0 38.0 38.0 36.0 38.0 56-57 36.951838881413124 38.0 38.0 38.0 36.0 38.0 58-59 36.93095773060472 38.0 38.0 38.0 36.0 38.0 60-61 36.940719215726745 38.0 38.0 38.0 36.0 38.0 62-63 36.94026507495512 38.0 38.0 38.0 36.0 38.0 64-65 36.887667735144746 38.0 38.0 38.0 36.0 38.0 66-67 36.92208975108305 38.0 38.0 38.0 36.0 38.0 68-69 36.92942822925653 38.0 38.0 38.0 36.0 38.0 70-71 36.91316252399348 38.0 38.0 38.0 35.5 38.0 72-73 36.90806168005625 38.0 38.0 38.0 36.0 38.0 74-75 36.87224997536046 38.0 38.0 38.0 35.5 38.0 76-77 36.8819315344403 38.0 38.0 38.0 35.0 38.0 78-79 36.88702723810432 38.0 38.0 38.0 35.0 38.0 80-81 36.88840036290324 38.0 38.0 38.0 35.0 38.0 82-83 36.83968678569408 38.0 38.0 38.0 35.0 38.0 84-85 36.82565653671486 38.0 38.0 38.0 35.0 38.0 86-87 36.7973911231316 38.0 38.0 38.0 35.0 38.0 88-89 36.810181016234154 38.0 38.0 38.0 35.0 38.0 90-91 36.79780884390752 38.0 38.0 38.0 35.0 38.0 92-93 36.77977364611499 38.0 38.0 38.0 35.0 38.0 94-95 36.763689448680715 38.0 38.0 38.0 35.0 38.0 96-97 36.7487504293081 38.0 38.0 38.0 35.0 38.0 98-99 36.78796770281301 38.0 38.0 38.0 35.0 38.0 100 35.23567104212744 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 25.0 21 88.0 22 289.0 23 1001.0 24 2570.0 25 5138.0 26 9641.0 27 16703.0 28 26927.0 29 40347.0 30 53779.0 31 69350.0 32 88226.0 33 115326.0 34 168942.0 35 295009.0 36 810161.0 37 4376701.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.85555974033877 20.28054859766818 14.355591811493973 24.50829985049908 2 14.054206528237742 20.225711134814006 43.72656106725527 21.99352126969298 3 17.72011017453292 26.517938393509 30.913637132903006 24.848314299055076 4 12.009474663400116 18.52621683177045 38.58389241434843 30.880416090480995 5 12.93727375444679 37.41996602102223 35.793349922618056 13.84941030191292 6 29.11583936791865 37.980553367224594 18.669408887492743 14.234198377364013 7 25.884559534736923 33.21852848594933 22.32288456265965 18.574027416654097 8 24.150402205179738 36.80232491205103 21.115796606378375 17.93147627639086 9 25.300062662103244 16.94095453625932 21.086143122875285 36.67283967876215 10-11 23.800818390093795 27.030120571096816 28.67770627097988 20.491354767829506 12-13 24.94028186433737 24.450251059581625 28.841877692126776 21.767589383954224 14-15 22.10082513325976 25.733286405284012 26.595720885558606 25.570167575897624 16-17 21.39567911082311 29.422209357211816 27.20257292898459 21.97953860298048 18-19 21.447987987296532 27.691789619800566 29.578782381587537 21.28144001131536 20-21 22.312669456645004 26.641014655198642 29.517441750498964 21.52887413765739 22-23 21.863130238218268 27.171079019197713 29.44606812014266 21.519722622441353 24-25 21.867021745596006 27.209795519807127 29.683309360186765 21.239873374410102 26-27 21.81833602513714 27.26180415541677 29.66346680254428 21.25639301690181 28-29 21.38863503002147 26.88103247481159 29.896867588723776 21.833464906443165 30-31 21.57223904034357 27.048627840505134 30.017421696132153 21.36171142301914 32-33 20.914087076821946 26.778781199596075 30.51553275812927 21.791598965452707 34-35 21.08599371536907 26.881672525530277 30.057189875963324 21.975143883137324 36-37 21.23477992300657 27.102893824182555 30.26216255339076 21.400163699420112 38-39 21.18624711203583 26.815125854880655 30.239638337799423 21.75898869528409 40-41 21.405630443796618 26.777736410232006 30.227795372391313 21.588837773580057 42-43 21.764149966727146 26.682950464373295 30.068280827488213 21.48461874141134 44-45 21.29971015012163 27.295805051058856 29.859387831267465 21.54509696755205 46-47 21.928546305956516 26.80289602654302 29.118145946540118 22.150411720960342 48-49 21.78013808782308 26.86317524509642 29.074191717812344 22.282494949268155 50-51 21.39553283102979 27.152559896843364 29.382454373264917 22.06945289886193 52-53 21.53660038684331 27.256121857705267 29.740415709027534 21.466862046423888 54-55 21.52945791453213 27.355040823309494 29.05049094790631 22.065010314252063 56-57 22.01415589194263 27.765434387020843 28.36197411874916 21.85843560228737 58-59 21.246421661945327 28.241146778940397 29.254727710791844 21.257703848322436 60-61 21.81867305372107 28.867047101300958 28.139116043976003 21.175163801001972 62-63 21.187520307961247 29.393599813876186 28.1499210044973 21.268958873665262 64-65 21.21660847722143 29.21553526219619 28.207316964335728 21.360539296246653 66-67 21.349155774441307 29.027662840330983 28.141867570916002 21.481313814311704 68-69 21.449450761398463 28.65619060140289 28.44123364785829 21.453124989340353 70-71 21.510547697117225 28.07264091863307 28.671986994768194 21.74482438948151 72-73 21.731752485787055 27.63857450779167 28.764197218873356 21.865475787547922 74-75 21.660882505818055 27.753427994823337 28.684225082420735 21.901464416937877 76-77 21.744863846147368 27.65920695718326 28.661103291587136 21.93482590508223 78-79 21.7480065166095 27.668321966828213 28.59732584925573 21.986345667306562 80-81 21.741754361524507 27.738926614100805 28.523826887644145 21.995492136730547 82-83 21.888032043568664 27.668450282220203 28.58921079094834 21.854306883262797 84-85 21.946698782844692 27.658562472588706 28.468871208806746 21.92586753575986 86-87 21.77136926965045 27.763489748314825 28.502624848508184 21.962516133526538 88-89 21.912600946981957 27.687338970213972 28.46132049234666 21.938739590457416 90-91 21.906971201834764 27.716302379519064 28.460602625202036 21.916123793444136 92-93 21.91889422042372 27.77284121745303 28.427936248878655 21.880328313244597 94-95 21.831759972474053 27.822893641454183 28.41819991567182 21.92714647039994 96-97 21.971486724281313 27.914271799607633 28.421765378836955 21.692476097274103 98-99 22.98037552538778 29.81311228110443 28.687492889278975 18.519019304228806 100 21.924487312036227 30.737145175432858 22.66325529046865 24.675112222062268 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2848.0 1 2321.0 2 2154.0 3 2694.0 4 3214.0 5 4299.0 6 5578.0 7 7769.0 8 10557.0 9 11865.0 10 11297.5 11 10590.0 12 11581.5 13 14853.5 14 21260.5 15 28414.0 16 33592.0 17 36398.5 18 35893.5 19 32626.5 20 28885.0 21 25976.5 22 25346.0 23 28089.5 24 34005.0 25 42820.0 26 54164.5 27 66696.5 28 79062.0 29 92411.0 30 106119.0 31 120078.0 32 135709.0 33 151248.5 34 166383.0 35 180130.0 36 195110.0 37 207955.0 38 215071.5 39 221722.0 40 229690.0 41 235800.0 42 237892.5 43 241448.5 44 258670.0 45 286981.0 46 285822.5 47 270695.5 48 262627.5 49 247782.5 50 237284.0 51 228646.0 52 218261.0 53 205648.5 54 191863.0 55 178364.0 56 163023.5 57 146039.0 58 130632.0 59 114538.5 60 97010.0 61 79292.5 62 62520.0 63 48779.0 64 37525.5 65 28451.5 66 21325.0 67 16303.5 68 12669.0 69 9620.0 70 7166.5 71 5202.0 72 3762.0 73 2727.0 74 1896.0 75 1307.0 76 864.0 77 544.5 78 362.5 79 239.5 80 146.0 81 88.5 82 66.0 83 54.0 84 44.5 85 34.0 86 23.5 87 16.0 88 12.0 89 9.5 90 5.5 91 2.0 92 1.0 93 1.5 94 2.0 95 2.0 96 1.5 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00550965999641461 3 9.703580292192894E-4 4 2.302544476113568E-4 5 0.0 6 0.0 7 9.374645367033812E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 7.072719148819632E-4 24-25 6.250964375754022E-4 26-27 1.0694263350348182E-4 28-29 0.0028396267693344013 30-31 0.0022090898607473827 32-33 0.005091797841077716 34-35 0.010435685731563967 36-37 0.0014758745786774146 38-39 0.0 40-41 1.1007499494078388E-4 42-43 6.571740015819971E-4 44-45 2.4122509264766596E-4 46-47 4.355082411659984E-5 48-49 0.004481511958241113 50-51 0.0036631997267181876 52-53 3.766717161602839E-4 54-55 0.002821901902187996 56-57 0.04137133046201272 58-59 0.06418612354594434 60-61 0.030869459390105426 62-63 0.01107712393516566 64-65 9.873784551362762E-4 66-67 2.114524166704472E-4 68-69 0.001374161858724466 70-71 0.011371553894633499 72-73 0.017206856298298063 74-75 0.010878434611559566 76-77 0.013071147807984941 78-79 0.0025524568798206805 80-81 0.01463173496400436 82-83 0.04529633161197379 84-85 0.02533380174811798 86-87 0.0038290645032956995 88-89 1.2025292031483965E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 74.0 20-21 325.0 22-23 651.0 24-25 787.0 26-27 2408.0 28-29 6251.0 30-31 16143.0 32-33 20072.0 34-35 27336.0 36-37 41919.0 38-39 47916.0 40-41 45657.0 42-43 52029.0 44-45 62092.0 46-47 62947.0 48-49 57460.0 50-51 49560.0 52-53 46352.0 54-55 49219.0 56-57 50402.0 58-59 51167.0 60-61 53957.0 62-63 55016.0 64-65 62057.0 66-67 70038.0 68-69 70444.0 70-71 94490.0 72-73 53615.0 74-75 47985.0 76-77 50111.0 78-79 51705.0 80-81 51204.0 82-83 47543.0 84-85 46934.0 86-87 48328.0 88-89 49888.0 90-91 50931.0 92-93 49862.0 94-95 57191.0 96-97 173347.0 98-99 384267.0 100-101 3820550.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.51151309255062 #Duplication Level Percentage of deduplicated Percentage of total 1 91.78528098342188 81.24054099467584 2 6.1160547033566655 10.826825119018185 3 1.245855044170619 3.308175451605839 4 0.41189677485302356 1.4583042712073104 5 0.18269923980904088 0.8085493078178482 6 0.08981015696811125 0.4769539730596203 7 0.04934399966893372 0.30572584509149475 8 0.028613406294086492 0.2026092708657205 9 0.021350803450123194 0.17008127272008486 >10 0.06686949955755783 0.9165451728104852 >50 0.0014928809938964801 0.08623645063881341 >100 6.262343904776041E-4 0.11479536497385952 >500 7.970480202446673E-5 0.05439244953750389 >1k 2.6568263482058647E-5 0.030265055977366374 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.6446746257954057E-5 1.6446746257954057E-5 2 0.0 0.0 0.0 1.6446746257954057E-5 1.6446746257954057E-5 3 0.0 0.0 0.0 3.2893492515908114E-5 1.6446746257954057E-5 4 0.0 8.223373128977029E-5 0.0 3.2893492515908114E-5 1.6446746257954057E-5 5 0.0 8.223373128977029E-5 0.0 3.2893492515908114E-5 1.6446746257954057E-5 6 6.578698503181623E-5 8.223373128977029E-5 0.0 6.578698503181623E-5 1.6446746257954057E-5 7 6.578698503181623E-5 8.223373128977029E-5 0.0 6.578698503181623E-5 1.6446746257954057E-5 8 6.578698503181623E-5 9.868047754772434E-5 0.0 6.578698503181623E-5 1.6446746257954057E-5 9 6.578698503181623E-5 2.1380770135340276E-4 0.0 8.223373128977029E-5 1.6446746257954057E-5 10-11 9.868047754772434E-5 2.1380770135340276E-4 0.0 1.0690385067670138E-4 1.6446746257954057E-5 12-13 1.151272238056784E-4 2.1380770135340276E-4 0.0 1.3157397006363246E-4 2.4670119386931086E-5 14-15 1.151272238056784E-4 2.9604143264317306E-4 0.0 1.3157397006363246E-4 4.111686564488514E-5 16-17 1.3157397006363246E-4 2.9604143264317306E-4 0.0 1.3157397006363246E-4 4.934023877386217E-5 18-19 1.3157397006363246E-4 3.0426480577215007E-4 0.0 1.4802071632158653E-4 4.934023877386217E-5 20-21 1.3157397006363246E-4 3.124881789011271E-4 0.0 1.4802071632158653E-4 7.401035816079326E-5 22-23 1.726908357085176E-4 3.6182841767498923E-4 0.0 1.8091420883749462E-4 9.045710441874731E-5 24-25 1.8091420883749464E-4 4.1939202957782845E-4 0.0 2.1380770135340276E-4 9.868047754772434E-5 26-27 1.8091420883749464E-4 4.4406214896475953E-4 0.0 2.87818059514196E-4 9.868047754772434E-5 28-29 1.8091420883749464E-4 4.4406214896475953E-4 0.0 6.578698503181623E-4 1.151272238056784E-4 30-31 1.973609550954487E-4 5.262958802545298E-4 0.0 0.001981832924083464 1.3157397006363246E-4 32-33 1.973609550954487E-4 5.59189372770438E-4 0.0 0.004572195459711228 1.3157397006363246E-4 34-35 2.0558432822442572E-4 6.414231040602083E-4 0.0 0.007524386413013982 1.3157397006363246E-4 36-37 2.1380770135340276E-4 7.401035816079326E-4 0.0 0.012113028618983165 1.3157397006363246E-4 38-39 2.1380770135340276E-4 7.729970741238407E-4 0.0 0.018724620614680696 1.3157397006363246E-4 40-41 2.302544476113568E-4 8.71677551671565E-4 0.0 0.025286872371604364 1.3157397006363246E-4 42-43 2.302544476113568E-4 8.963476710584961E-4 0.0 0.031503742457110996 1.4802071632158653E-4 44-45 2.5492456699828785E-4 0.0010114748948641746 0.0 0.03874031081061078 1.6446746257954057E-4 46-47 2.631479401272649E-4 0.0011019319992829218 0.0 0.04660185552191282 1.6446746257954057E-4 48-49 2.631479401272649E-4 0.001118378745540876 0.0 0.05396999784547624 1.973609550954487E-4 50-51 2.631479401272649E-4 0.0013404098200232558 0.0 0.0608940780200749 1.973609550954487E-4 52-53 2.79594686385219E-4 0.0013486331931522328 0.0 0.0670862779861946 1.973609550954487E-4 54-55 2.79594686385219E-4 0.0013486331931522328 0.0 0.07333604156421714 1.973609550954487E-4 56-57 2.79594686385219E-4 0.0013486331931522328 0.0 0.08038347233575047 2.1380770135340276E-4 58-59 2.79594686385219E-4 0.0013486331931522328 0.0 0.08702795782396389 2.3847782074033384E-4 60-61 2.9604143264317306E-4 0.0013486331931522328 0.0 0.09303102020811713 2.4670119386931085E-4 62-63 3.2893492515908114E-4 0.0013486331931522328 0.0 0.09931367727865559 2.631479401272649E-4 64-65 3.2893492515908114E-4 0.0015788876407635895 0.0 0.1050289216032946 2.631479401272649E-4 66-67 3.2893492515908114E-4 0.0015871110138925666 0.0 0.11051391148032229 2.631479401272649E-4 68-69 3.2893492515908114E-4 0.0016364512526664287 0.0 0.11604001822299485 2.631479401272649E-4 70-71 3.3715829828805815E-4 0.001669344745182337 0.0 0.1213934341299589 2.71371313256242E-4 72-73 3.618284176749893E-4 0.0016775681183113138 0.0 0.12557090767947923 2.79594686385219E-4 74-75 3.618284176749893E-4 0.001694014864569268 0.0 0.12870401284161948 2.79594686385219E-4 76-77 3.618284176749893E-4 0.0017269083570851762 0.0 0.1319522452275654 2.79594686385219E-4 78-79 3.618284176749893E-4 0.00174335510334313 0.0 0.1342136728380341 2.79594686385219E-4 80-81 3.618284176749893E-4 0.0017515784764721072 0.0 0.13487154268835225 2.87818059514196E-4 82-83 3.618284176749893E-4 0.0017762485958590381 0.0 0.1354554021805096 2.9604143264317306E-4 84-85 3.618284176749893E-4 0.0018091420883749464 0.0 0.13577611373253973 2.9604143264317306E-4 86-87 3.618284176749893E-4 0.0018091420883749464 0.0 0.13593235782199029 3.0426480577215007E-4 88 3.618284176749893E-4 0.0018749290734067627 0.0 0.13593235782199029 3.124881789011271E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9350 0.0 54.681503 1 GGTATCA 11155 0.0 53.603733 1 TATACAC 11555 0.0 46.019844 3 TTATACA 12270 0.0 42.28274 2 GTATCAA 20780 0.0 38.38715 1 TACACAT 15870 0.0 33.374462 5 ACACATC 15900 0.0 31.836832 6 ACATCTC 16120 0.0 31.557398 8 ATCAACG 26040 0.0 30.132833 3 TCAACGC 26140 0.0 30.048853 4 TATCAAC 26260 0.0 29.993729 2 CACATCT 16905 0.0 29.894602 7 CAACGCA 26710 0.0 29.438953 5 ATACACA 18820 0.0 29.344442 4 GTGGTAT 4675 0.0 29.199295 1 TGGTATC 4570 0.0 28.862286 2 AACGCAG 27530 0.0 28.501257 6 CATCTCC 18415 0.0 27.465351 9 ACGCAGA 31210 0.0 25.16748 7 CGCAGAG 31570 0.0 24.893139 8 >>END_MODULE