##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139584_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6238552 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.998082728171536 33.0 31.0 33.0 25.0 34.0 2 32.19383456289216 33.0 33.0 33.0 29.0 34.0 3 32.2014425783419 33.0 33.0 33.0 31.0 34.0 4 32.871241595806204 33.0 33.0 34.0 31.0 34.0 5 32.98979186195771 33.0 33.0 34.0 31.0 34.0 6 36.666237934700234 38.0 37.0 38.0 34.0 38.0 7 37.15428195517165 38.0 38.0 38.0 36.0 38.0 8 37.06035759580108 38.0 38.0 38.0 36.0 38.0 9 37.227283510660804 38.0 38.0 38.0 36.0 38.0 10-11 37.35186049583301 38.0 38.0 38.0 37.0 38.0 12-13 37.35400354120635 38.0 38.0 38.0 37.0 38.0 14-15 37.43024559224641 38.0 38.0 38.0 37.0 38.0 16-17 37.44957339459542 38.0 38.0 38.0 37.0 38.0 18-19 37.46050557885869 38.0 38.0 38.0 37.0 38.0 20-21 37.47162882398739 38.0 38.0 38.0 37.0 38.0 22-23 37.48514639196438 38.0 38.0 38.0 37.0 38.0 24-25 37.498983085674084 38.0 38.0 38.0 37.0 38.0 26-27 37.47592063831489 38.0 38.0 38.0 37.0 38.0 28-29 37.452624591866126 38.0 38.0 38.0 37.0 38.0 30-31 37.45846372441939 38.0 38.0 38.0 37.0 38.0 32-33 37.44705023995576 38.0 38.0 38.0 37.0 38.0 34-35 37.42341766946171 38.0 38.0 38.0 37.0 38.0 36-37 37.410393007289855 38.0 38.0 38.0 37.0 38.0 38-39 37.39942981120171 38.0 38.0 38.0 37.0 38.0 40-41 37.38687202703008 38.0 38.0 38.0 37.0 38.0 42-43 37.35699506617543 38.0 38.0 38.0 37.0 38.0 44-45 37.32419316005111 38.0 38.0 38.0 37.0 38.0 46-47 37.285050136467376 38.0 38.0 38.0 37.0 38.0 48-49 37.23336357784649 38.0 38.0 38.0 37.0 38.0 50-51 37.16214692892088 38.0 38.0 38.0 37.0 38.0 52-53 37.18801212154965 38.0 38.0 38.0 37.0 38.0 54-55 37.171883908198524 38.0 38.0 38.0 37.0 38.0 56-57 37.122188947419154 38.0 38.0 38.0 36.0 38.0 58-59 37.11112528232886 38.0 38.0 38.0 36.0 38.0 60-61 37.13050472881461 38.0 38.0 38.0 36.0 38.0 62-63 37.13131601020021 38.0 38.0 38.0 36.0 38.0 64-65 37.07680771484592 38.0 38.0 38.0 36.0 38.0 66-67 37.12121945670664 38.0 38.0 38.0 36.0 38.0 68-69 37.13194758726026 38.0 38.0 38.0 36.0 38.0 70-71 37.113136108761935 38.0 38.0 38.0 36.0 38.0 72-73 37.10789274040661 38.0 38.0 38.0 36.0 38.0 74-75 37.06675955335476 38.0 38.0 38.0 36.0 38.0 76-77 37.073039083282296 38.0 38.0 38.0 36.0 38.0 78-79 37.0738073832145 38.0 38.0 38.0 36.0 38.0 80-81 37.0688720732458 38.0 38.0 38.0 36.0 38.0 82-83 37.01731639894769 38.0 38.0 38.0 36.0 38.0 84-85 37.00030830814086 38.0 38.0 38.0 36.0 38.0 86-87 36.96905580734556 38.0 38.0 38.0 36.0 38.0 88-89 36.97338770902632 38.0 38.0 38.0 36.0 38.0 90-91 36.960586906859405 38.0 38.0 38.0 35.5 38.0 92-93 36.937065216001216 38.0 38.0 38.0 35.0 38.0 94-95 36.92022033996756 38.0 38.0 38.0 35.0 38.0 96-97 36.89856497725226 38.0 38.0 38.0 35.0 38.0 98-99 36.92529094865279 38.0 38.0 38.0 35.0 38.0 100 35.42783698700989 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 4.0 20 14.0 21 54.0 22 220.0 23 807.0 24 2068.0 25 4317.0 26 7915.0 27 13634.0 28 21778.0 29 32000.0 30 44442.0 31 58822.0 32 76013.0 33 102147.0 34 151158.0 35 269897.0 36 753075.0 37 4700186.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.412446349729876 20.15217633835544 14.51522725145194 23.920150060462746 2 14.261810889510684 20.453239353307563 43.17649067319846 22.10845908398329 3 18.079323990368827 26.097368738690175 30.366333781678932 25.45697348926207 4 12.374137137302727 17.878200911239432 39.32975621203436 30.417905739423478 5 13.297140105588603 37.403903982847304 35.49400566028783 13.804950251276257 6 29.680252725311902 37.73785968282383 18.919021593472333 13.662865998391934 7 26.581182182008728 33.05072180231053 22.971409226059997 17.396686789620745 8 24.27879097585465 36.788408592250256 21.100761843453416 17.832038588441677 9 25.65269953668736 17.296321325846126 21.59579658869558 35.45518254877093 10-11 23.954877670331193 27.038165266555442 28.807438008050585 20.19951905506278 12-13 24.905314566585325 24.745830442705294 29.116075332865705 21.23277965784368 14-15 22.12125506046916 26.02723356317299 27.006940071991064 24.844571304366784 16-17 21.237019423738072 29.305462229055717 27.72003823964279 21.73748010756342 18-19 21.2781988512719 28.254641461672513 29.75656851141098 20.710591175644605 20-21 22.307981817547805 27.225212059802807 29.695242317128358 20.77156380552103 22-23 22.089277039004855 27.07050389731015 29.566108583944573 21.274110479740425 24-25 21.704845220755878 27.291791871505396 29.588070667415366 21.41529224032336 26-27 21.52115722755066 27.41229243451235 29.63012100214575 21.43642933579124 28-29 21.450288066893826 27.38152646603302 29.713796546792544 21.454388920280614 30-31 21.71075678465669 27.324075544125577 29.580595377286755 21.38457229393098 32-33 21.501886353617174 27.458150782333814 29.5394053254719 21.500557538577112 34-35 21.68246773782487 27.4566569475909 29.52015984574417 21.340715468840056 36-37 21.659155419536795 27.35827902444217 29.421987142397732 21.560578413623308 38-39 21.501426509648557 27.480700523758372 29.565773826580905 21.45209914001217 40-41 21.6731064872286 27.396270932842263 29.443221335262535 21.487401244666597 42-43 21.646082249473103 27.424104671815243 29.225266702220893 21.704546376490764 44-45 21.660219511867304 27.51973528945495 29.118485534578177 21.701559664099577 46-47 21.74778646741045 27.555811738481108 28.913666475850096 21.782735318258347 48-49 21.709547242360603 27.70569055639576 28.779848828599082 21.804913372644556 50-51 21.79205502141148 27.88170162644012 28.49775515028192 21.828488201866474 52-53 21.925947559934627 27.852655307037132 28.31938557151559 21.90201156151265 54-55 21.896458611992447 27.836514500954085 28.321448109066203 21.94557877798727 56-57 21.858993091063873 27.91684004470171 28.28917167611001 21.93499518812441 58-59 21.847382737382794 27.845604421384536 28.338378853025432 21.96863398820724 60-61 21.86989832701579 27.87684177764001 28.374090913263935 21.879168982080273 62-63 21.862569897335593 27.90413327303865 28.353664627180912 21.87963220244484 64-65 21.88247476823351 27.776493011226272 28.348050222196402 21.99298199834381 66-67 21.943090326765567 27.738865109524628 28.281998680469645 22.03604588324016 68-69 21.868123794414796 27.7569787001908 28.396688989583595 21.97820851581081 70-71 21.91644312725769 27.62705286065111 28.426080108829115 22.030423903262086 72-73 21.921031450873784 27.76527088037733 28.284650899165502 22.02904676958338 74-75 21.81982099337941 27.881831427306768 28.2125814903678 22.08576608894602 76-77 21.9682941910382 27.804712258605534 28.189129206120654 22.03786434423561 78-79 21.921884586913514 27.756845923035776 28.13399307199651 22.1872764180542 80-81 21.9336324382661 27.919092493595937 28.053488824936096 22.093786243201865 82-83 22.01301614490214 27.82625272451633 28.115339517114858 22.045391613466666 84-85 21.966199394000576 27.89329990187091 28.061699654303673 22.078801049824836 86-87 21.957081219224552 27.930263778192604 28.08565494153851 22.02700006104433 88-89 22.025687188081402 27.89050875493101 28.003747949756562 22.080056107231023 90-91 22.02712365400142 27.92676709961507 28.00953078332621 22.036578463057303 92-93 22.063929155223093 27.93843848116232 27.975110302127394 22.022522061487198 94-95 21.9419334716632 27.946927399810672 28.014495090786628 22.096644037739495 96-97 22.11891700966411 28.027088620554874 28.01665379960101 21.83734057018001 98-99 23.110051466756605 29.945252493970564 28.305360937822964 18.63933510144987 100 21.94700013925083 30.835181722333843 22.294057968131455 24.923760170283874 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2318.0 1 1825.0 2 1399.5 3 1761.0 4 2532.0 5 3480.5 6 4123.0 7 4226.0 8 4111.5 9 4264.0 10 4700.5 11 5826.5 12 7684.0 13 11714.5 14 18058.0 15 24872.0 16 30440.0 17 32769.0 18 32759.0 19 30001.5 20 26406.0 21 24399.0 22 24135.5 23 27024.0 24 32841.5 25 41423.0 26 52546.5 27 64952.0 28 78457.0 29 93521.5 30 109453.5 31 125439.5 32 142613.5 33 159510.5 34 174997.5 35 189905.5 36 206323.0 37 220997.0 38 231163.0 39 240191.0 40 248128.0 41 253756.0 42 256017.0 43 260119.5 44 265284.5 45 268076.5 46 267402.0 47 264206.0 48 261365.5 49 256159.0 50 248621.5 51 240230.0 52 229432.0 53 214703.5 54 197794.0 55 181440.0 56 164404.0 57 145866.5 58 128132.0 59 110445.5 60 93045.0 61 76380.0 62 61045.5 63 47864.0 64 36772.5 65 27787.0 66 20433.5 67 15392.5 68 11593.5 69 8498.5 70 6330.5 71 4628.5 72 3262.5 73 2219.5 74 1520.5 75 1030.5 76 668.5 77 407.5 78 272.5 79 186.5 80 125.5 81 87.5 82 53.0 83 37.0 84 33.5 85 28.0 86 18.5 87 12.5 88 11.5 89 10.5 90 6.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005562188148788372 3 9.777910002192816E-4 4 2.5646977054931977E-4 5 0.0 6 0.0 7 0.0011380846068126066 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.654965686836557E-4 24-25 6.57596750124783E-4 26-27 1.6844482910469968E-4 28-29 0.002688354114176887 30-31 0.0018640143670514248 32-33 0.004445292700781067 34-35 0.009555258065469752 36-37 0.0013791342184778998 38-39 0.0 40-41 1.2331556082067327E-4 42-43 6.871267628837303E-4 44-45 2.921851979980472E-4 46-47 5.900670805116185E-5 48-49 0.0042804845814903 50-51 0.0032158535042871883 52-53 3.906839756452819E-4 54-55 0.002906330627148507 56-57 0.04110781952165655 58-59 0.06220590815277158 60-61 0.029810217877330725 62-63 0.010777420659071507 64-65 7.513079171362341E-4 66-67 1.572849581547995E-4 68-69 0.0015890384018236927 70-71 0.011059644255350658 72-73 0.016743387316049324 74-75 0.011050116565723965 76-77 0.012942966962055017 78-79 0.0026359475178914936 80-81 0.014308764849320952 82-83 0.04477271290580736 84-85 0.025170852619733397 86-87 0.0040933933861842745 88-89 9.334601594536644E-5 90-91 1.0493682645642084E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 584.0 20-21 1763.0 22-23 1117.0 24-25 1198.0 26-27 2253.0 28-29 5227.0 30-31 13773.0 32-33 17035.0 34-35 23706.0 36-37 36986.0 38-39 42636.0 40-41 41657.0 42-43 47338.0 44-45 57260.0 46-47 56921.0 48-49 53234.0 50-51 65404.0 52-53 46329.0 54-55 50463.0 56-57 51869.0 58-59 52046.0 60-61 50749.0 62-63 48940.0 64-65 52378.0 66-67 54772.0 68-69 55134.0 70-71 54129.0 72-73 50968.0 74-75 51507.0 76-77 53786.0 78-79 55229.0 80-81 54216.0 82-83 51037.0 84-85 50411.0 86-87 52197.0 88-89 55118.0 90-91 56256.0 92-93 55054.0 94-95 60186.0 96-97 183333.0 98-99 402833.0 100-101 4021520.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.27332480284682 #Duplication Level Percentage of deduplicated Percentage of total 1 91.58819960525356 80.84794891862514 2 6.177656619643541 10.906445786125019 3 1.2908006477357374 3.418297944999054 4 0.4586114196511635 1.6193261922064734 5 0.2030027250878244 0.8959862743770274 6 0.09996188444654226 0.529438073619256 7 0.05047968683328587 0.3119206854246443 8 0.03887827934358673 0.2745531984217793 9 0.023162808445408033 0.1840192301922864 >10 0.06804558909866001 0.8882360449129887 >50 7.708000152947964E-4 0.04450377753088057 >100 4.04018763994022E-4 0.06518611400071764 >500 2.5915681380617814E-5 0.014137759564789904 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.205872131866497E-5 0.0 0.0 0.0 3 0.0 3.205872131866497E-5 0.0 1.6029360659332486E-5 0.0 4 0.0 6.411744263732994E-5 0.0 1.6029360659332486E-5 0.0 5 0.0 6.411744263732994E-5 0.0 3.205872131866497E-5 0.0 6 0.0 6.411744263732994E-5 0.0 4.808808197799746E-5 0.0 7 0.0 6.411744263732994E-5 0.0 4.808808197799746E-5 0.0 8 0.0 8.014680329666243E-5 0.0 4.808808197799746E-5 0.0 9 0.0 1.4426424593399237E-4 0.0 6.411744263732994E-5 0.0 10-11 0.0 1.4426424593399237E-4 0.0 7.213212296699618E-5 0.0 12-13 0.0 1.6029360659332485E-4 0.0 1.0419084428566116E-4 0.0 14-15 8.014680329666243E-6 2.64484450878986E-4 0.0 1.122055246153274E-4 0.0 16-17 4.808808197799746E-5 2.724991312086523E-4 0.0 1.3624956560432614E-4 0.0 18-19 6.411744263732994E-5 2.8852849186798474E-4 0.0 1.9235232791198984E-4 0.0 20-21 6.411744263732994E-5 3.2860189351631593E-4 0.0 2.244110492306548E-4 0.0 22-23 6.411744263732994E-5 3.766899754943134E-4 0.0 2.5646977054931977E-4 0.0 24-25 6.411744263732994E-5 4.408074181316434E-4 0.0 2.8852849186798474E-4 0.0 26-27 6.411744263732994E-5 4.648514591206421E-4 0.0 4.0073401648331214E-4 0.0 28-29 6.411744263732994E-5 4.648514591206421E-4 0.0 9.136735575819518E-4 0.0 30-31 6.411744263732994E-5 5.93086344395302E-4 0.0 0.0023723453775812077 0.0 32-33 6.411744263732994E-5 5.93086344395302E-4 0.0 0.005602261550436704 0.0 34-35 6.411744263732994E-5 6.812478280216307E-4 0.0 0.0094733521496655 0.0 36-37 6.411744263732994E-5 7.694093116479594E-4 0.0 0.015404215593618518 0.0 38-39 6.411744263732994E-5 8.174973936259568E-4 0.0 0.02470124477603136 0.0 40-41 8.014680329666243E-5 8.174973936259568E-4 0.0 0.0339982739584442 0.0 42-43 8.014680329666243E-5 8.174973936259568E-4 0.0 0.042181262575033435 0.0 44-45 8.014680329666243E-5 9.056588772522855E-4 0.0 0.05152637983942428 0.0 46-47 8.014680329666243E-5 9.938203608786142E-4 0.0 0.06230612488282537 0.0 48-49 8.014680329666243E-5 9.938203608786142E-4 0.0 0.07327822225413846 0.0 50-51 8.014680329666243E-5 0.0011060258854939415 0.0 0.08382554156797924 0.0 52-53 8.014680329666243E-5 0.0011060258854939415 0.0 0.09402822962764437 0.0 54-55 8.014680329666243E-5 0.0011300699264829403 0.0 0.10324511200676054 0.0 56-57 8.014680329666243E-5 0.0011380846068126066 0.0 0.11037016281983383 0.0 58-59 8.014680329666243E-5 0.0011380846068126066 0.0 0.11708646493609415 0.0 60-61 8.014680329666243E-5 0.0011781580084609376 0.0 0.12373063492938746 0.0 62-63 9.617616395599492E-5 0.0012342607707686013 0.0 0.13047899576696642 0.0 64-65 9.617616395599492E-5 0.0013945543773619263 0.0 0.1365461087765238 0.0 66-67 9.617616395599492E-5 0.0014105837380212589 0.0 0.14294182367959746 0.0 68-69 9.617616395599492E-5 0.0014266130986805912 0.0 0.14906503945146246 0.0 70-71 9.617616395599492E-5 0.0014266130986805912 0.0 0.15414634678047084 0.0 72-73 1.122055246153274E-4 0.0014346277790102575 0.0 0.15832199523222695 0.0 74-75 1.122055246153274E-4 0.0014666865003289224 0.0 0.16188852797892844 0.0 76-77 1.122055246153274E-4 0.0014987452216475875 0.0 0.16531079647969593 0.0 78-79 1.122055246153274E-4 0.0015227892626365862 0.0 0.16764306845562882 0.0 80-81 1.122055246153274E-4 0.0015227892626365862 0.0 0.1683323309639801 0.0 82-83 1.122055246153274E-4 0.0015227892626365862 0.0 0.16896549071002376 0.0 84-85 1.122055246153274E-4 0.0015949213856035825 0.0 0.16928607792321038 0.0 86-87 1.122055246153274E-4 0.0016349947872519137 0.0 0.16943034216914438 0.0 88 1.122055246153274E-4 0.001683082869229911 0.0 0.1694463715298037 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10095 0.0 52.23009 1 GTATCAA 18510 0.0 38.018494 1 TCAACGC 22470 0.0 30.957758 4 ATCAACG 22585 0.0 30.782377 3 CAACGCA 22985 0.0 30.245712 5 TATCAAC 23225 0.0 30.154444 2 AACGCAG 23880 0.0 29.094414 6 GTGGTAT 4610 0.0 28.272148 1 TGGTATC 4655 0.0 26.54436 2 ACGCAGA 27225 0.0 25.4731 7 CGCAGAG 27740 0.0 25.045546 8 GCAGAGT 31315 0.0 22.213305 9 GTACATG 25430 0.0 20.634045 1 GAGTACT 16530 0.0 20.541681 12-13 TACATGG 25630 0.0 20.142818 2 ACATGGG 25360 0.0 19.888943 3 CAGAGTA 31050 0.0 19.616156 10-11 GTACTTT 18065 0.0 18.693832 14-15 AGAGTAC 29160 0.0 18.174147 10-11 AGTACTT 17825 0.0 16.996021 12-13 >>END_MODULE