##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139581_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5814992 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.309157089124113 25.0 18.0 33.0 18.0 33.0 2 27.681566027949824 29.0 25.0 31.0 18.0 33.0 3 27.06593543034969 29.0 25.0 31.0 18.0 33.0 4 31.04376927775653 31.0 30.0 33.0 28.0 33.0 5 31.74955339577423 33.0 31.0 33.0 29.0 33.0 6 36.087244144102 38.0 36.0 38.0 33.0 38.0 7 36.36993017359267 38.0 37.0 38.0 34.0 38.0 8 36.491926558110485 38.0 37.0 38.0 34.0 38.0 9 37.16083702264767 38.0 38.0 38.0 36.0 38.0 10-11 37.21410502370425 38.0 38.0 38.0 36.0 38.0 12-13 37.318023481373665 38.0 38.0 38.0 36.5 38.0 14-15 37.30582613011333 38.0 38.0 38.0 36.0 38.0 16-17 37.41638698729078 38.0 38.0 38.0 37.0 38.0 18-19 37.440693813508254 38.0 38.0 38.0 37.0 38.0 20-21 37.47239398201245 38.0 38.0 38.0 37.0 38.0 22-23 37.49903494839282 38.0 38.0 38.0 37.0 38.0 24-25 37.51032249508312 38.0 38.0 38.0 37.0 38.0 26-27 37.47799034337319 38.0 38.0 38.0 37.0 38.0 28-29 37.45252667326123 38.0 38.0 38.0 37.0 38.0 30-31 37.46555276189948 38.0 38.0 38.0 37.0 38.0 32-33 37.456289171920886 38.0 38.0 38.0 37.0 38.0 34-35 37.42463271426112 38.0 38.0 38.0 37.0 38.0 36-37 37.40681975321928 38.0 38.0 38.0 37.0 38.0 38-39 37.396273524225535 38.0 38.0 38.0 37.0 38.0 40-41 37.39643034258718 38.0 38.0 38.0 37.0 38.0 42-43 37.37259584246483 38.0 38.0 38.0 37.0 38.0 44-45 37.342209921514346 38.0 38.0 38.0 37.0 38.0 46-47 37.30891326034468 38.0 38.0 38.0 37.0 38.0 48-49 37.2551106075788 38.0 38.0 38.0 37.0 38.0 50-51 37.179176731392474 38.0 38.0 38.0 37.0 38.0 52-53 37.20434491252725 38.0 38.0 38.0 37.0 38.0 54-55 37.18753163642498 38.0 38.0 38.0 37.0 38.0 56-57 37.138835651289995 38.0 38.0 38.0 36.0 38.0 58-59 37.12624424363159 38.0 38.0 38.0 36.0 38.0 60-61 37.14519236405846 38.0 38.0 38.0 36.0 38.0 62-63 37.148866143491844 38.0 38.0 38.0 36.0 38.0 64-65 37.09128806372598 38.0 38.0 38.0 36.0 38.0 66-67 37.13502297731015 38.0 38.0 38.0 36.0 38.0 68-69 37.14488144158118 38.0 38.0 38.0 36.0 38.0 70-71 37.1270657991256 38.0 38.0 38.0 36.0 38.0 72-73 37.12076408750224 38.0 38.0 38.0 36.0 38.0 74-75 37.07749634503932 38.0 38.0 38.0 36.0 38.0 76-77 37.08398397522807 38.0 38.0 38.0 36.0 38.0 78-79 37.08284272698421 38.0 38.0 38.0 36.0 38.0 80-81 37.07680685165627 38.0 38.0 38.0 36.0 38.0 82-83 37.02764615144001 38.0 38.0 38.0 36.0 38.0 84-85 37.01679072800489 38.0 38.0 38.0 36.0 38.0 86-87 36.98689646530264 38.0 38.0 38.0 36.0 38.0 88-89 36.99544176689217 38.0 38.0 38.0 36.0 38.0 90-91 36.98289026545483 38.0 38.0 38.0 36.0 38.0 92-93 36.96438716781263 38.0 38.0 38.0 36.0 38.0 94-95 36.94819754259963 38.0 38.0 38.0 35.5 38.0 96-97 36.93045786946074 38.0 38.0 38.0 35.0 38.0 98-99 36.96417238480165 38.0 38.0 38.0 35.0 38.0 100 35.54611927782052 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 8.0 21 56.0 22 274.0 23 890.0 24 2294.0 25 4542.0 26 8302.0 27 13938.0 28 22311.0 29 32452.0 30 43447.0 31 56804.0 32 74407.0 33 102788.0 34 162608.0 35 331206.0 36 1174064.0 37 3784597.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 49.050832744051924 18.649122819085566 10.46231877877046 21.83772565809205 2 15.13644706739797 19.838123938165573 40.961464148755105 24.063964845681355 3 19.900374053022976 24.896323288020827 29.058318806125794 26.1449838528304 4 13.29858290335251 17.22964862524222 38.15244330684776 31.319325164557522 5 14.179709963487483 37.17989637818934 34.52983254319181 14.11056111513137 6 31.28723134958741 36.55826181704119 18.21235523625828 13.942151597113117 7 27.66299264433133 32.25372921034344 22.027298158494684 18.055979986830543 8 24.657230826800795 36.56806406612425 20.582865806178237 18.191839300896717 9 25.67613162666432 17.329241381587455 21.126649873293033 35.867977118455194 10-11 24.65895911808649 26.56758599151985 28.09065773435286 20.6827971560408 12-13 25.355236946155728 24.019671910124725 28.47033151550337 22.15475962821617 14-15 22.523049042887763 25.456827799591125 26.10847959894012 25.911643558580995 16-17 22.172584244311942 28.66755448674736 26.875840929789756 22.28402033915094 18-19 22.15601500397593 27.72242850893002 28.60191381174729 21.51964267534676 20-21 22.847272947708337 26.869409060208348 28.638518159927052 21.644799832156263 22-23 22.596689581850562 26.788107080610384 28.540664197237227 22.074539140301823 24-25 22.39067994053024 26.884054001597935 28.654852229819376 22.07041382805245 26-27 22.3090878881478 27.061100200586246 28.58344521924651 22.046366692019447 28-29 22.22227574931599 27.014912982867557 28.6317743615066 22.131036906309856 30-31 22.53244915758439 26.91923108080525 28.53068899024194 22.017630771368417 32-33 22.3113196891952 27.081275961255102 28.518483456616156 22.08892089293354 34-35 22.433087501906044 27.083875989686394 28.521274936814283 21.961761571593275 36-37 22.420584122135526 26.923685743389697 28.487921408208916 22.167808726265864 38-39 22.23993757513363 27.088262482362957 28.600019003109413 22.071780939394003 40-41 22.506319880817863 26.929519626116914 28.447916996305196 22.11624349676003 42-43 22.375567067643505 26.98755765109015 28.403501718189816 22.233373563076526 44-45 22.392654406340146 27.09401988805789 28.28169300295538 22.231632702646586 46-47 22.518196980141873 27.064457737552537 27.9804487535858 22.436896528719785 48-49 22.45848363326146 27.163004610317348 27.98736249095961 22.39114926546158 50-51 22.377212923711532 27.360380601831785 27.909277710461712 22.353128763994974 52-53 22.534619519091688 27.277558672730116 27.83578026067624 22.35204154750195 54-55 22.551946231097325 27.18571996894694 27.844758775424328 22.417575024531406 56-57 22.530523536662102 27.34561522975708 27.79177256802138 22.33208866555944 58-59 22.446388195384937 27.39135081637632 27.857797464699196 22.304463523539553 60-61 22.488576800287813 27.428836945825218 27.848774772970327 22.23381148091664 62-63 22.41867996611289 27.490315594091268 27.839850161220305 22.251154278575537 64-65 22.404342683501458 27.461822205202147 27.815142750852683 22.318692360443713 66-67 22.48815474781119 27.491930558527343 27.651970205489995 22.36794448817147 68-69 22.359676913874647 27.446492680951252 27.773773411053927 22.420056994120177 70-71 22.375551983273677 27.26436857598174 27.834000623216276 22.526078817528305 72-73 22.525801023938605 27.20166836335088 27.745169568807558 22.52736104390296 74-75 22.35909543669009 27.363970656512244 27.705712609943014 22.571221296854656 76-77 22.570363321962134 27.27150154816397 27.62120680013255 22.536928329741343 78-79 22.529658881028258 27.27244205733492 27.570422200984474 22.627476860652344 80-81 22.47766409992448 27.324753551410634 27.5496804259777 22.647901922687186 82-83 22.59028959673503 27.283490384971564 27.615378916504486 22.51084110178892 84-85 22.649890786627736 27.27723530278643 27.588311767745992 22.48456214283984 86-87 22.547396195386884 27.327579532577523 27.589779620267368 22.535244651768224 88-89 22.573797682432673 27.33917629290548 27.575023452581394 22.512002572080455 90-91 22.629831464033924 27.368950310426015 27.52067476405186 22.480543461488196 92-93 22.68984798272106 27.35222459556536 27.5508710727911 22.40705634892248 94-95 22.573540892122306 27.45180514231279 27.52629913356483 22.44835483200007 96-97 22.73704730052556 27.513119923554708 27.5785680158351 22.171264760084636 98-99 23.75255245539754 29.39547881581397 27.781420329494445 19.070548399294044 100 22.69345080576327 30.19549376303389 21.75141151473233 25.35964391647051 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 707.0 1 748.0 2 1002.5 3 1385.5 4 1757.0 5 2408.0 6 3227.5 7 4106.5 8 5729.0 9 6955.5 10 6708.5 11 6365.0 12 6888.5 13 8434.0 14 11370.5 15 14627.5 16 17442.0 17 19913.5 18 20563.5 19 19186.5 20 17266.5 21 15748.0 22 15666.0 23 17849.5 24 22265.5 25 28885.5 26 37427.0 27 47640.0 28 58436.0 29 70527.0 30 82993.0 31 94796.5 32 107721.0 33 120348.0 34 132696.5 35 145475.5 36 159747.0 37 172279.0 38 182025.5 39 191551.0 40 201143.0 41 210413.5 42 216661.0 43 222534.5 44 229757.0 45 237789.5 46 241915.0 47 242849.0 48 243148.5 49 241493.0 50 240120.0 51 236378.0 52 228950.5 53 218740.5 54 206727.0 55 193421.5 56 178878.5 57 162968.0 58 146361.0 59 128705.0 60 108932.0 61 88787.5 62 70509.5 63 54690.5 64 40670.0 65 29681.0 66 22035.5 67 16707.0 68 12777.0 69 9553.0 70 7004.5 71 5037.5 72 3452.0 73 2215.0 74 1407.5 75 887.5 76 572.5 77 362.5 78 231.5 79 151.5 80 89.5 81 54.5 82 36.0 83 25.0 84 16.0 85 10.5 86 6.5 87 4.5 88 3.5 89 3.0 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0029750685813497253 3 7.05074056851669E-4 4 6.878771286357746E-5 5 0.0 6 0.0 7 3.611354925337816E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.213438702549801E-4 24-25 3.783705832006385E-4 26-27 2.5799973322827583E-5 28-29 0.0028473691427423143 30-31 0.002109126007452016 32-33 0.004379672045329261 34-35 0.009441868926818 36-37 0.001516196180883764 38-39 0.0 40-41 1.0490143199196454E-4 42-43 6.676119231624355E-4 44-45 1.7670388934095635E-4 46-47 3.558005360846677E-5 48-49 0.00419142901129832 50-51 0.0033889734880423765 52-53 4.7135387608342275E-4 54-55 0.0027985621407049586 56-57 0.04276429189880334 58-59 0.0657460921370277 60-61 0.031280280985233104 62-63 0.011251996129388219 64-65 9.050475065092715E-4 66-67 2.470328034859749E-4 68-69 0.0015904369898086521 70-71 0.011249102681113453 72-73 0.017176768936680988 74-75 0.011072789195315747 76-77 0.01269873092924499 78-79 0.0030573428633174906 80-81 0.013922394095291883 82-83 0.04617013210516781 84-85 0.024623900696733272 86-87 0.004088299400965812 88-89 4.1781666351040994E-5 90-91 2.1094810096608957E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 27.0 20-21 161.0 22-23 341.0 24-25 350.0 26-27 1121.0 28-29 2979.0 30-31 8064.0 32-33 10610.0 34-35 14919.0 36-37 23520.0 38-39 26539.0 40-41 27147.0 42-43 31040.0 44-45 37244.0 46-47 38765.0 48-49 36421.0 50-51 32207.0 52-53 30414.0 54-55 33167.0 56-57 34422.0 58-59 36994.0 60-61 38059.0 62-63 37198.0 64-65 40249.0 66-67 43163.0 68-69 44429.0 70-71 46115.0 72-73 40369.0 74-75 40634.0 76-77 42788.0 78-79 44697.0 80-81 44620.0 82-83 42448.0 84-85 42168.0 86-87 43612.0 88-89 45727.0 90-91 46545.0 92-93 46459.0 94-95 55218.0 96-97 182893.0 98-99 406136.0 100-101 4015013.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.88456528647376 #Duplication Level Percentage of deduplicated Percentage of total 1 91.4316042607764 80.35426793903235 2 6.266090932997001 11.013853553839125 3 1.3428734781838005 3.5405355559475495 4 0.46220047649735374 1.6248115180868388 5 0.19578291291152922 0.8603148095874649 6 0.1026586917508929 0.5413268698443199 7 0.05969096020767261 0.36721398625684576 8 0.03561606968594601 0.25040822412496966 9 0.0262259280013019 0.2074368853465899 >10 0.07487099384644129 1.036289233143801 >50 0.0018195725034401025 0.1098792365283742 >100 5.370196471885571E-4 0.07888004589441845 >500 2.8702991063618742E-5 0.014782142367399375 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.7196928215894364E-5 0.0 0.0 0.0 4 0.0 5.159078464768309E-5 0.0 0.0 0.0 5 0.0 5.159078464768309E-5 0.0 1.7196928215894364E-5 0.0 6 8.598464107947182E-5 5.159078464768309E-5 0.0 3.439385643178873E-5 0.0 7 8.598464107947182E-5 5.159078464768309E-5 0.0 3.439385643178873E-5 0.0 8 8.598464107947182E-5 5.159078464768309E-5 0.0 3.439385643178873E-5 0.0 9 1.0318156929536618E-4 1.0318156929536618E-4 0.0 6.878771286357746E-5 0.0 10-11 1.2037849751126055E-4 1.0318156929536618E-4 0.0 8.598464107947182E-5 0.0 12-13 1.2037849751126055E-4 1.0318156929536618E-4 0.0 9.4583105187419E-5 0.0 14-15 1.3757542572715491E-4 1.0318156929536618E-4 0.0 1.0318156929536618E-4 0.0 16-17 2.0636313859073236E-4 1.1178003340331336E-4 0.0 1.0318156929536618E-4 0.0 18-19 2.0636313859073236E-4 1.805677462668908E-4 0.0 1.2897696161920773E-4 0.0 20-21 2.0636313859073236E-4 2.321585309145739E-4 0.0 1.5477235394304928E-4 0.0 22-23 2.0636313859073236E-4 2.923477796702042E-4 0.0 1.8916621037483802E-4 0.0 24-25 2.2356006680662673E-4 3.439385643178873E-4 0.0 2.0636313859073236E-4 0.0 26-27 2.2356006680662673E-4 3.7833242074967604E-4 0.0 2.5795392323841546E-4 0.0 28-29 2.2356006680662673E-4 3.869308848576232E-4 0.0 5.503017029086197E-4 0.0 30-31 2.5795392323841546E-4 4.987109182609366E-4 0.0 0.0012897696161920773 0.0 32-33 2.6655238734636265E-4 5.24506310584778E-4 0.0 0.0031986286481563517 0.0 34-35 3.0954470788609856E-4 6.1049095166425E-4 0.0 0.005803963272864348 0.0 36-37 3.439385643178873E-4 6.964755927437217E-4 0.0 0.010060203006298203 0.0 38-39 3.439385643178873E-4 7.308694491755105E-4 0.0 0.021685326480242795 0.0 40-41 3.439385643178873E-4 8.770433390106125E-4 0.0 0.03454003032162383 0.0 42-43 3.525370284258345E-4 9.114371954424013E-4 0.0 0.0421152772007253 0.0 44-45 3.6113549253378167E-4 0.0011178003340331336 0.0 0.05113506604996189 0.0 46-47 3.6113549253378167E-4 0.0013155650085159187 0.0 0.06121246598447599 0.0 48-49 3.6113549253378167E-4 0.001324163472623866 0.0 0.0703612317953318 0.0 50-51 4.127262771814647E-4 0.0015391250753225456 0.0 0.08058480561968098 0.0 52-53 4.213247412894119E-4 0.0015649204676463871 0.0 0.11234753203443788 0.0 54-55 4.299232053973591E-4 0.0015821173958622814 0.0 0.1504731218890757 0.0 56-57 4.299232053973591E-4 0.0015993143240781759 0.0 0.20638033551894824 8.598464107947182E-6 58-59 4.299232053973591E-4 0.0015993143240781759 0.0 0.2428722171930761 1.7196928215894364E-5 60-61 4.815139900450422E-4 0.0016251097164020174 0.0 0.25509063469046905 1.7196928215894364E-5 62-63 5.846955593404084E-4 0.0016337081805099646 0.0 0.26650939502582294 2.5795392323841545E-5 64-65 5.846955593404084E-4 0.0016681020369417533 0.0 0.27260570607835743 3.439385643178873E-5 66-67 6.018924875563028E-4 0.0016852989651576476 0.0 0.2779969430740403 3.439385643178873E-5 68-69 6.362863439880915E-4 0.0016938974292655948 0.0 0.28339677853383116 3.439385643178873E-5 70-71 6.706802004198802E-4 0.001711094357481489 0.0 0.28793676758282727 3.439385643178873E-5 72-73 7.222709850675633E-4 0.0017282912856973836 0.0 0.29163410714924454 3.439385643178873E-5 74-75 7.308694491755105E-4 0.0017626851421291723 0.0 0.2943770171996797 3.439385643178873E-5 76-77 7.394679132834577E-4 0.001797078998560961 0.0 0.29724030574762617 3.439385643178873E-5 78-79 7.394679132834577E-4 0.0018400713191006968 0.0 0.2991319678513745 3.439385643178873E-5 80-81 7.394679132834577E-4 0.0018572682473165913 0.0 0.2998026480517944 3.439385643178873E-5 82-83 7.394679132834577E-4 0.0018572682473165913 0.0 0.3002755635777315 3.439385643178873E-5 84-85 7.566648414993521E-4 0.0019002605678563273 0.0 0.3004389343957825 3.439385643178873E-5 86-87 7.566648414993521E-4 0.0019088590319642745 0.0 0.30054211596507785 3.439385643178873E-5 88 7.566648414993521E-4 0.0019948436730437462 0.0 0.3005507144291858 3.439385643178873E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7195 0.0 50.73117 1 GTATCAA 13190 0.0 38.775562 1 TCAACGC 15050 0.0 32.97083 4 TATCAAC 15260 0.0 32.74687 2 ATCAACG 15320 0.0 32.390034 3 CAACGCA 15440 0.0 32.13802 5 AACGCAG 16045 0.0 30.953289 6 ACGCAGA 18670 0.0 26.577988 7 CGCAGAG 19285 0.0 25.730413 8 GTGGTAT 3730 0.0 24.814026 1 TGGTATC 3480 0.0 24.59877 2 GCAGAGT 22535 0.0 22.173822 9 GAGTACT 13050 0.0 20.72665 12-13 GTACATG 17560 0.0 20.39056 1 TACATGG 17610 0.0 19.543047 2 CAGAGTA 22015 0.0 19.529783 10-11 ACATGGG 17855 0.0 18.93319 3 GTACTTT 14355 0.0 18.873165 14-15 GATCAAC 2705 0.0 18.313192 1 AGAGTAC 20300 0.0 17.647978 10-11 >>END_MODULE