##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139577_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5646079 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.266555072998447 25.0 18.0 33.0 18.0 33.0 2 27.285778856441787 28.0 25.0 31.0 18.0 33.0 3 26.73481277892144 29.0 25.0 31.0 18.0 33.0 4 30.943975633355468 31.0 30.0 33.0 28.0 33.0 5 31.746925432676377 33.0 31.0 33.0 29.0 33.0 6 36.04904500982009 38.0 36.0 38.0 33.0 38.0 7 36.437846158369375 38.0 37.0 38.0 34.0 38.0 8 36.52439347731408 38.0 37.0 38.0 34.0 38.0 9 37.20449802420406 38.0 38.0 38.0 36.0 38.0 10-11 37.25076083774244 38.0 38.0 38.0 36.0 38.0 12-13 37.35137367011691 38.0 38.0 38.0 37.0 38.0 14-15 37.3279438704276 38.0 38.0 38.0 36.0 38.0 16-17 37.43328467419602 38.0 38.0 38.0 37.0 38.0 18-19 37.461209805955605 38.0 38.0 38.0 37.0 38.0 20-21 37.492340250208585 38.0 38.0 38.0 37.0 38.0 22-23 37.51381941964921 38.0 38.0 38.0 37.0 38.0 24-25 37.522940794735746 38.0 38.0 38.0 37.0 38.0 26-27 37.49693564989403 38.0 38.0 38.0 37.0 38.0 28-29 37.47499655796658 38.0 38.0 38.0 37.0 38.0 30-31 37.48451371188277 38.0 38.0 38.0 37.0 38.0 32-33 37.47062834813602 38.0 38.0 38.0 37.0 38.0 34-35 37.436930153772025 38.0 38.0 38.0 37.0 38.0 36-37 37.415917656370134 38.0 38.0 38.0 37.0 38.0 38-39 37.40518647040158 38.0 38.0 38.0 37.0 38.0 40-41 37.39003678459376 38.0 38.0 38.0 37.0 38.0 42-43 37.35692009504007 38.0 38.0 38.0 37.0 38.0 44-45 37.3155091923031 38.0 38.0 38.0 37.0 38.0 46-47 37.264932970115055 38.0 38.0 38.0 37.0 38.0 48-49 37.200457096135224 38.0 38.0 38.0 37.0 38.0 50-51 37.11874706156942 38.0 38.0 38.0 37.0 38.0 52-53 37.14871322468819 38.0 38.0 38.0 37.0 38.0 54-55 37.1308538192081 38.0 38.0 38.0 36.5 38.0 56-57 37.08232504271086 38.0 38.0 38.0 36.0 38.0 58-59 37.07228122356078 38.0 38.0 38.0 36.0 38.0 60-61 37.09857598745718 38.0 38.0 38.0 36.0 38.0 62-63 37.102599212713955 38.0 38.0 38.0 36.0 38.0 64-65 37.04638903065752 38.0 38.0 38.0 36.0 38.0 66-67 37.09010864892865 38.0 38.0 38.0 36.0 38.0 68-69 37.10544044950815 38.0 38.0 38.0 36.0 38.0 70-71 37.08984001032708 38.0 38.0 38.0 36.0 38.0 72-73 37.08666247951673 38.0 38.0 38.0 36.0 38.0 74-75 37.04924947353737 38.0 38.0 38.0 36.0 38.0 76-77 37.06002261134803 38.0 38.0 38.0 36.0 38.0 78-79 37.06059839527539 38.0 38.0 38.0 36.0 38.0 80-81 37.057963676076305 38.0 38.0 38.0 36.0 38.0 82-83 37.013537336892384 38.0 38.0 38.0 36.0 38.0 84-85 37.00002008473405 38.0 38.0 38.0 36.0 38.0 86-87 36.974760310736926 38.0 38.0 38.0 36.0 38.0 88-89 36.98175949717366 38.0 38.0 38.0 36.0 38.0 90-91 36.97016013756581 38.0 38.0 38.0 35.5 38.0 92-93 36.954719280521 38.0 38.0 38.0 35.0 38.0 94-95 36.942931887948696 38.0 38.0 38.0 35.0 38.0 96-97 36.92707804412489 38.0 38.0 38.0 35.0 38.0 98-99 36.95991762041254 38.0 38.0 38.0 35.0 38.0 100 35.59553445291165 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 10.0 21 60.0 22 293.0 23 789.0 24 2070.0 25 4198.0 26 8198.0 27 14275.0 28 23265.0 29 33764.0 30 43788.0 31 56222.0 32 71982.0 33 99631.0 34 159066.0 35 344511.0 36 1299078.0 37 3484877.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 50.052222081908525 18.91714586352759 10.42766139120618 20.602970663357702 2 15.167166054453904 19.957693290704267 41.62703180158816 23.248108853253672 3 20.190175836577794 26.049080789041803 28.94884873250942 24.811894641870992 4 13.218811298114177 17.19493630530944 38.655189667158155 30.931062729418223 5 13.673028662900395 38.020190649121275 34.335970148487114 13.970810539491211 6 30.44709434635966 37.058514413276896 18.318624305469335 14.17576693489411 7 27.127192104650717 33.09310673039491 22.59170911811391 17.18799204684047 8 24.463313389699294 36.933595863607295 20.74108421083021 17.862006535863205 9 26.007872011709367 17.310526473327773 21.698545131940236 34.98305638302263 10-11 24.809881335347946 27.010222492458922 27.842463769989756 20.33743240220337 12-13 25.399768582763365 24.63250159978279 28.60726886747422 21.360460949979622 14-15 22.647734826239592 25.734230782105598 26.60717287165128 25.01086152000353 16-17 21.664123013510793 28.98145775147673 27.40183940040513 21.952579834607345 18-19 21.647970210831268 27.853179170890098 29.55925696399218 20.939593654286455 20-21 22.5929407913975 26.885316951668504 29.534286919187025 20.98745533774697 22-23 22.439024174235875 26.712167533406074 29.457124739623925 21.391683552734126 24-25 22.009904380357113 26.88841221863824 29.590124600123396 21.511558800881247 26-27 21.858580339420154 26.99277591407954 29.600973097634785 21.547670648865523 28-29 21.73229630686741 27.032805143589815 29.649957031861128 21.584941517681642 30-31 21.956685259620663 26.930809493131875 29.55568510406775 21.556820143179714 32-33 21.721241600150506 27.14656584917247 29.465502426756807 21.666690123920215 34-35 21.953251826707117 27.176161798608334 29.486037019689903 21.384549354994643 36-37 21.96404746996682 26.994930592838255 29.365171353233134 21.675850583961797 38-39 21.814844992624664 27.15248979138229 29.468734218567473 21.56393099742558 40-41 21.956345172731865 27.05320701960396 29.41437870410006 21.576069103564123 42-43 21.939299290607682 27.13525773359948 29.152603410675574 21.77283956511726 44-45 21.913206912028727 27.312294284859366 28.98769449431478 21.786804308797127 46-47 22.061529691204207 27.364247528513765 28.67294174713258 21.901281033149452 48-49 22.125353817239652 27.486040168780058 28.436273702293192 21.952332311687105 50-51 22.019219856169467 27.62322948674197 28.362881181488763 21.9946694755998 52-53 22.176293031284175 27.562824377630633 28.232213507424763 22.028669083660425 54-55 22.178421066265432 27.631073401975176 28.184654714161617 22.005850817597775 56-57 22.14385596949824 27.645230885893184 28.19365804131417 22.01725510329441 58-59 22.091263182380487 27.58831799401065 28.284776923981315 22.035641899627546 60-61 22.133399952589976 27.65019985776993 28.3128979785347 21.903502211105387 62-63 22.124985779802593 27.675859194134446 28.29744957275404 21.901705453308924 64-65 22.09334567884112 27.611773059422678 28.28444959269314 22.01043166904306 66-67 22.197128700045816 27.592834408717298 28.180769063344556 22.02926782789233 68-69 22.09118095366446 27.562537157225925 28.31276127340639 22.03352061570323 70-71 22.06916538888524 27.430981190474725 28.381594466216452 22.118258954423585 72-73 22.226887491175766 27.488455915063824 28.288268799821182 21.996387793939228 74-75 22.01025609120879 27.669770541800386 28.225010981262688 22.09496238572813 76-77 22.172043459294915 27.460038638267097 28.243366430125043 22.12455147231294 78-79 22.092363327186973 27.456590743940545 28.214794803020986 22.236251125851492 80-81 22.11876589197802 27.628281971572342 28.094897921763113 22.15805421468652 82-83 22.217652592541363 27.476222055320225 28.256298706360454 22.04982664577796 84-85 22.21275340850984 27.493264481233798 28.104322577122144 22.189659533134215 86-87 22.110232143268803 27.636002097227912 28.13911217745811 22.114653582045175 88-89 22.196556174390565 27.541847926732572 28.112987607721234 22.148608291155625 90-91 22.27683239817143 27.564189472028804 28.059461200867347 22.09951692893242 92-93 22.258339622178454 27.63871965248762 28.03995410676925 22.06298661856467 94-95 22.055348572083293 27.61207708691098 28.119913911555173 22.21266042945056 96-97 22.289913553625595 27.739265777527784 28.05478664217094 21.916034026675682 98-99 23.230584898258556 29.635559606241674 28.286629313268257 18.847226182231513 100 29.666864311691587 40.5566437567628 29.776491931545607 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1811.0 1 1726.0 2 1996.0 3 2594.0 4 3242.0 5 4635.0 6 6116.5 7 7448.5 8 9528.5 9 10530.0 10 9616.5 11 8834.0 12 9397.5 13 11738.5 14 16304.0 15 21541.5 16 26357.5 17 30748.0 18 32069.5 19 29579.5 20 25944.0 21 22935.0 22 21946.0 23 24165.0 24 29155.5 25 36585.0 26 46955.5 27 58584.5 28 70332.5 29 83418.0 30 97023.5 31 109986.5 32 124904.5 33 141190.5 34 154472.0 35 167539.0 36 182333.5 37 193464.0 38 201828.0 39 208951.5 40 214091.0 41 217330.5 42 219935.5 43 224713.0 44 230894.5 45 235906.0 46 237077.0 47 237314.5 48 237803.5 49 235920.5 50 232071.5 51 225980.5 52 218106.0 53 208515.0 54 196578.0 55 184170.0 56 169496.0 57 153312.0 58 137762.5 59 120073.0 60 102559.5 61 85753.0 62 69910.5 63 55744.5 64 43197.0 65 32905.0 66 24422.0 67 19027.0 68 14838.5 69 11058.0 70 8228.5 71 6167.0 72 4635.0 73 3418.0 74 2501.5 75 1794.0 76 1215.5 77 734.0 78 492.0 79 387.0 80 279.0 81 182.5 82 140.0 83 113.5 84 82.0 85 55.5 86 38.5 87 26.5 88 18.0 89 10.5 90 5.5 91 3.5 92 2.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0029400934701763826 3 7.261676643206728E-4 4 7.084562578738272E-5 5 0.0 6 0.0 7 3.7193953538375925E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.668018489076311E-4 24-25 3.5428334767295184E-4 26-27 9.744431898734447E-5 28-29 0.0026591230300884203 30-31 0.0021130600785596674 32-33 0.004899059772448472 34-35 0.009454223001060177 36-37 0.0013138135435818948 38-39 0.0 40-41 1.0084942722109404E-4 42-43 6.106878704897578E-4 44-45 1.870134144722201E-4 46-47 4.733240258896882E-5 48-49 0.0046571329597086125 50-51 0.003624757012862945 52-53 4.3078828185380726E-4 54-55 0.00290673647052589 56-57 0.040577773132578106 58-59 0.06256762668353187 60-61 0.030613004735362985 62-63 0.010734967484402815 64-65 9.176664451405965E-4 66-67 2.318806118401824E-4 68-69 0.0015992811337922344 70-71 0.011317213622170778 72-73 0.016914347273156233 74-75 0.010720887001189224 76-77 0.01311490181834322 78-79 0.0027986804221809417 80-81 0.014655286640501137 82-83 0.045766579807655514 84-85 0.025577961990540597 86-87 0.004184823065326152 88-89 5.981518781789529E-5 90-91 1.2115848838792816E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 53.0 20-21 210.0 22-23 513.0 24-25 708.0 26-27 2393.0 28-29 6329.0 30-31 17621.0 32-33 21584.0 34-35 29554.0 36-37 46448.0 38-39 54575.0 40-41 49758.0 42-43 53598.0 44-45 64290.0 46-47 65057.0 48-49 60685.0 50-51 53685.0 52-53 48912.0 54-55 52499.0 56-57 54867.0 58-59 54292.0 60-61 52171.0 62-63 49151.0 64-65 50193.0 66-67 53464.0 68-69 55093.0 70-71 54013.0 72-73 49138.0 74-75 49034.0 76-77 52150.0 78-79 53496.0 80-81 52845.0 82-83 48803.0 84-85 47290.0 86-87 49274.0 88-89 52086.0 90-91 52619.0 92-93 51031.0 94-95 55633.0 96-97 159531.0 98-99 1220811.0 100-101 2600622.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.68984091227304 #Duplication Level Percentage of deduplicated Percentage of total 1 90.76299627836947 78.6822970809308 2 6.612533954029544 11.464790330036498 3 1.5057858939337925 3.9160901877919594 4 0.5501027925380163 1.9075329428207106 5 0.22334912705820648 0.9681050146285489 6 0.11220332146142764 0.5836132852391877 7 0.06559198890661759 0.39803113584039795 8 0.044029029819047716 0.3053495672427978 9 0.03017888931337165 0.23545828021367568 >10 0.08980744687492138 1.1968287943232698 >50 0.002421003010223686 0.1406612746009731 >100 9.365983728598803E-4 0.16442311001265503 >500 6.367631253559549E-5 0.03681899631856191 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.771140644684568E-5 0.0 2 0.0 5.3134219340537036E-5 0.0 1.771140644684568E-5 3.542281289369136E-5 3 0.0 5.3134219340537036E-5 0.0 3.542281289369136E-5 3.542281289369136E-5 4 0.0 1.4169125157476544E-4 0.0 3.542281289369136E-5 3.542281289369136E-5 5 0.0 2.1253687736214814E-4 0.0 3.542281289369136E-5 3.542281289369136E-5 6 1.594026580216111E-4 2.1253687736214814E-4 0.0 5.3134219340537036E-5 3.542281289369136E-5 7 1.594026580216111E-4 2.302482838089938E-4 0.0 7.084562578738272E-5 3.542281289369136E-5 8 1.594026580216111E-4 2.302482838089938E-4 0.0 7.084562578738272E-5 3.542281289369136E-5 9 1.594026580216111E-4 3.5422812893691355E-4 0.0 7.084562578738272E-5 3.542281289369136E-5 10-11 1.594026580216111E-4 3.5422812893691355E-4 0.0 9.741273545765122E-5 3.542281289369136E-5 12-13 1.594026580216111E-4 3.5422812893691355E-4 0.0 1.2397984512791974E-4 4.42785161171142E-5 14-15 1.9482547091530247E-4 5.224864901819475E-4 0.0 1.2397984512791974E-4 1.328355483513426E-4 16-17 2.302482838089938E-4 5.49053599852216E-4 0.0 1.594026580216111E-4 2.1253687736214814E-4 18-19 2.302482838089938E-4 5.933321159693303E-4 0.0 2.833825031495309E-4 2.656710967026852E-4 20-21 2.302482838089938E-4 6.376106320864444E-4 0.0 3.365167224900679E-4 2.656710967026852E-4 22-23 2.302482838089938E-4 6.553220385332901E-4 0.0 3.365167224900679E-4 3.2766101926664506E-4 24-25 2.302482838089938E-4 7.350233675440956E-4 0.0 3.365167224900679E-4 3.8965094183060495E-4 26-27 2.302482838089938E-4 7.615904772143642E-4 0.0 4.073623482774506E-4 4.3392945794771913E-4 28-29 2.302482838089938E-4 7.615904772143642E-4 0.0 7.70446180437787E-4 4.42785161171142E-4 30-31 2.302482838089938E-4 8.324361030017469E-4 0.0 0.002160791586515173 4.42785161171142E-4 32-33 2.3910398703241663E-4 8.324361030017469E-4 0.0 0.004985760914787058 4.95919380511679E-4 34-35 2.479596902558395E-4 9.564159481296666E-4 0.0 0.008660877752507536 4.95919380511679E-4 36-37 2.479596902558395E-4 0.001098107199704432 0.0 0.014204547970370233 5.136307869585247E-4 38-39 2.479596902558395E-4 0.0011158186061512778 0.0 0.02192672118119495 5.401978966287932E-4 40-41 2.479596902558395E-4 0.0012220870448323518 0.0 0.030295360727329534 5.667650062990617E-4 42-43 2.479596902558395E-4 0.0012840769673963118 0.0 0.03725594346093988 5.756207095224846E-4 44-45 2.5681539347926233E-4 0.0014966138447584597 0.0 0.04471244557506192 5.844764127459073E-4 46-47 2.656710967026852E-4 0.0016294493931098024 0.0 0.05311650793409019 6.198992256395987E-4 48-49 2.74526799926108E-4 0.0016294493931098024 0.0 0.062096191002640945 6.553220385332901E-4 50-51 3.010939095963765E-4 0.0017445735350142995 0.0 0.07039398492298815 6.553220385332901E-4 52-53 3.188053160432222E-4 0.001771140644684568 0.0 0.07854123188853716 6.730334449801358E-4 54-55 3.188053160432222E-4 0.0018331305672485278 0.0 0.08588260986075469 6.907448514269814E-4 56-57 3.188053160432222E-4 0.0018774090833656419 0.0 0.09333025627165331 6.907448514269814E-4 58-59 3.365167224900679E-4 0.001921687599482756 0.0 0.10167232870811761 6.907448514269814E-4 60-61 3.365167224900679E-4 0.001992533225270139 0.0 0.10961589449952791 6.996005546504043E-4 62-63 3.5422812893691355E-4 0.00202795603816383 0.0 0.11704582950397965 7.084562578738271E-4 64-65 3.5422812893691355E-4 0.00208994596072779 0.0 0.12405069075370714 7.084562578738271E-4 66-67 3.7193953538375925E-4 0.0021076573671746355 0.0 0.13116182044211566 7.084562578738271E-4 68-69 3.7193953538375925E-4 0.00215193588329175 0.0 0.13764419520166118 7.084562578738271E-4 70-71 3.896509418306049E-4 0.0021873586961854413 0.0 0.14360408347102477 7.438790707675185E-4 72-73 4.604965676179876E-4 0.0022316372123025556 0.0 0.14824447196009832 8.501475094485926E-4 74-75 4.604965676179876E-4 0.0022847714316430925 0.0 0.1519195887978188 8.501475094485926E-4 76-77 4.604965676179876E-4 0.0023821841671007437 0.0 0.15510764195825102 8.590032126720154E-4 78-79 4.604965676179876E-4 0.0024353183864412806 0.0 0.15718873221575538 8.678589158954383E-4 80-81 4.604965676179876E-4 0.0024441740896647035 0.0 0.1578883327704058 8.85570322342284E-4 82-83 4.604965676179876E-4 0.0024441740896647035 0.0 0.15822484949289586 9.209931352359752E-4 84-85 4.604965676179876E-4 0.0024707411993349724 0.0 0.15844624207348146 9.209931352359752E-4 86-87 4.6935227084141047E-4 0.002479596902558395 0.0 0.158499376292822 9.387045416828209E-4 88 4.782079740648333E-4 0.0026035767476863146 0.0 0.158499376292822 9.387045416828209E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10470 0.0 46.756874 1 GTATCAA 19575 0.0 37.046722 1 TCAACGC 22630 0.0 31.36691 4 TATCAAC 22875 0.0 31.321415 2 ATCAACG 22940 0.0 30.906864 3 CAACGCA 23025 0.0 30.828802 5 AACGCAG 23905 0.0 29.65921 6 ACGCAGA 27725 0.0 25.557749 7 GTGGTAT 5495 0.0 25.292238 1 CGCAGAG 28170 0.0 25.12456 8 TGGTATC 5245 0.0 24.836723 2 GCAGAGT 31905 0.0 22.26134 9 GTACATG 26120 0.0 21.902882 1 TACATGG 26185 0.0 21.452417 2 ACATGGG 26460 0.0 20.774584 3 GATCAAC 3625 0.0 20.485905 1 GAGTACT 17265 0.0 20.256634 12-13 CAGAGTA 31495 0.0 18.843107 10-11 CATGGGG 16530 0.0 18.672668 4 GTACTTT 19415 0.0 17.992542 14-15 >>END_MODULE