##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139575_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5876516 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.296827405898323 25.0 18.0 33.0 18.0 33.0 2 27.325844599078774 28.0 25.0 31.0 18.0 33.0 3 26.780944865971605 29.0 25.0 31.0 18.0 33.0 4 30.97584419067352 31.0 30.0 33.0 28.0 33.0 5 31.759987210108847 33.0 31.0 33.0 29.0 33.0 6 36.05621494096162 38.0 36.0 38.0 33.0 38.0 7 36.45585802880482 38.0 37.0 38.0 34.0 38.0 8 36.515437208032786 38.0 37.0 38.0 34.0 38.0 9 37.18131865887883 38.0 38.0 38.0 36.0 38.0 10-11 37.22851311899772 38.0 38.0 38.0 36.0 38.0 12-13 37.325300143826716 38.0 38.0 38.0 36.5 38.0 14-15 37.30223715888802 38.0 38.0 38.0 36.0 38.0 16-17 37.405657706028535 38.0 38.0 38.0 37.0 38.0 18-19 37.43464996947171 38.0 38.0 38.0 37.0 38.0 20-21 37.46801583377449 38.0 38.0 38.0 37.0 38.0 22-23 37.488644432526655 38.0 38.0 38.0 37.0 38.0 24-25 37.49770919027658 38.0 38.0 38.0 37.0 38.0 26-27 37.472718341724146 38.0 38.0 38.0 37.0 38.0 28-29 37.448813352004365 38.0 38.0 38.0 37.0 38.0 30-31 37.45870345126842 38.0 38.0 38.0 37.0 38.0 32-33 37.44673453968039 38.0 38.0 38.0 37.0 38.0 34-35 37.41331822918403 38.0 38.0 38.0 37.0 38.0 36-37 37.39469756187705 38.0 38.0 38.0 37.0 38.0 38-39 37.38225414087319 38.0 38.0 38.0 37.0 38.0 40-41 37.364981748290134 38.0 38.0 38.0 37.0 38.0 42-43 37.33406976964113 38.0 38.0 38.0 37.0 38.0 44-45 37.293676995887935 38.0 38.0 38.0 37.0 38.0 46-47 37.24406597604156 38.0 38.0 38.0 37.0 38.0 48-49 37.18109073263728 38.0 38.0 38.0 37.0 38.0 50-51 37.09908740890714 38.0 38.0 38.0 36.0 38.0 52-53 37.123978752742374 38.0 38.0 38.0 36.0 38.0 54-55 37.10664300086766 38.0 38.0 38.0 36.0 38.0 56-57 37.05630704581553 38.0 38.0 38.0 36.0 38.0 58-59 37.04378535856816 38.0 38.0 38.0 36.0 38.0 60-61 37.06254561604409 38.0 38.0 38.0 36.0 38.0 62-63 37.06541574350332 38.0 38.0 38.0 36.0 38.0 64-65 37.00876916719716 38.0 38.0 38.0 36.0 38.0 66-67 37.05344906433173 38.0 38.0 38.0 36.0 38.0 68-69 37.06671785453237 38.0 38.0 38.0 36.0 38.0 70-71 37.04841649334796 38.0 38.0 38.0 36.0 38.0 72-73 37.044047009091884 38.0 38.0 38.0 36.0 38.0 74-75 37.0062951182866 38.0 38.0 38.0 36.0 38.0 76-77 37.012832177369 38.0 38.0 38.0 36.0 38.0 78-79 37.0116033030918 38.0 38.0 38.0 36.0 38.0 80-81 37.00943400862896 38.0 38.0 38.0 36.0 38.0 82-83 36.958887497707394 38.0 38.0 38.0 36.0 38.0 84-85 36.945415158689045 38.0 38.0 38.0 36.0 38.0 86-87 36.91819558756041 38.0 38.0 38.0 35.0 38.0 88-89 36.924518741322785 38.0 38.0 38.0 35.0 38.0 90-91 36.91343523423542 38.0 38.0 38.0 35.0 38.0 92-93 36.89509222036695 38.0 38.0 38.0 35.0 38.0 94-95 36.88172016285284 38.0 38.0 38.0 35.0 38.0 96-97 36.86451294786899 38.0 38.0 38.0 35.0 38.0 98-99 36.90389056230621 38.0 38.0 38.0 35.0 38.0 100 35.41710110366185 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 15.0 21 87.0 22 348.0 23 993.0 24 2409.0 25 4840.0 26 9098.0 27 15477.0 28 25413.0 29 36425.0 30 48431.0 31 61437.0 32 79360.0 33 108462.0 34 171264.0 35 352365.0 36 1281646.0 37 3678440.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 49.51544418495585 18.717774273055667 10.94493744252547 20.821844099463014 2 15.143357114012653 20.191789479810474 40.89752139895265 23.767332007224226 3 19.789619134567687 25.569894248007095 29.58642794119274 25.054058676232476 4 13.138116624283247 17.51052324916549 38.76632941445538 30.585030712095886 5 13.740692614467484 37.81936439890575 34.57912817730778 13.860814809318992 6 30.478637342261976 37.137038340404416 18.423841609552326 13.960482707781278 7 27.106112974370294 33.077897885153085 22.352008448564888 17.463980691911736 8 24.674620132064646 36.426243032436226 20.839694812368418 18.05944202313071 9 26.0030092660345 17.153224801906436 21.34991209076943 35.493853841289635 10-11 24.515044288146242 26.85687403897139 28.228009589355324 20.400072083527043 12-13 25.249824896248047 24.502239081796084 28.70521410985693 21.54272191209894 14-15 22.504737500927423 25.7299478126155 26.627494930669805 25.137819755787273 16-17 21.681834951185362 28.969146004197043 27.40055502273796 21.94846402187963 18-19 21.64440631149477 27.953365565583415 29.40535684749263 20.996871275429182 20-21 22.608245363076623 27.02381791084297 29.383690881077555 20.984245845002857 22-23 22.326470924091225 26.837092645673106 29.323870057771124 21.512566372464548 24-25 21.947864823102943 26.95480107814473 29.48222400623318 21.615110092519142 26-27 21.84932716420019 27.14975750847135 29.41477349372058 21.586141833607876 28-29 21.783564648171073 27.18162986430186 29.476125810591032 21.55867967693603 30-31 22.06789036902521 27.0486251462089 29.35637738458383 21.527107100182057 32-33 21.86482700363979 27.231684057455467 29.269790191414007 21.633698747490733 34-35 22.005285436807686 27.227548225133937 29.268121317080197 21.499045020978176 36-37 21.963178032442375 27.04619068318556 29.285255553134874 21.705375731237186 38-39 21.811103301177955 27.268676897294377 29.332120870065026 21.588098931462643 40-41 22.082652635357608 27.207295513971623 29.16799321088176 21.54205863978901 42-43 22.003248790298322 27.253100619711752 28.954672517131925 21.788978072858008 44-45 22.02567532881688 27.38138126777902 28.83523942592366 21.757703977480435 46-47 22.102508185846588 27.38007603200886 28.556515562874274 21.960900219270275 48-49 22.060983454505354 27.496857661632358 28.493074978186517 21.94908390567577 50-51 22.055152666493484 27.687237591992464 28.317080303199617 21.940529438314435 52-53 22.225693842049886 27.61749400391873 28.19734587355502 21.95946628047637 54-55 22.28018405581489 27.51160149227182 28.216750632492865 21.991463819420424 56-57 22.1685831710384 27.69118491490754 28.187333767728003 21.952898146326056 58-59 22.117410959874125 27.653108157546097 28.242551073469148 21.98692980911063 60-61 22.183065567356174 27.654642263001826 28.277587807203975 21.88470436243803 62-63 22.14192310209042 27.670523221431104 28.275204213981663 21.912349462496817 64-65 22.11396048202456 27.571833573771432 28.299961482055664 22.014244462148344 66-67 22.24622553298526 27.593691466803726 28.130996840986345 22.02908615922467 68-69 22.19964820873662 27.595604137211634 28.23881591183437 21.965931742217375 70-71 22.137591531994868 27.313651026895474 28.42587603566214 22.12288140544752 72-73 22.260563705307895 27.402741927209046 28.276156532029194 22.06053783545386 74-75 22.02880650134609 27.64224540751954 28.180162769335677 22.148785321798695 76-77 22.141280817971797 27.514726049097206 28.235784412635816 22.108208720295178 78-79 22.16531024959328 27.542881770882833 28.089152000878244 22.202655978645645 80-81 22.126157118557245 27.628298957731307 28.03970406662113 22.205839857090318 82-83 22.30799324404269 27.521139304217623 28.127101264555904 22.04376618718378 84-85 22.300103142232825 27.523551854835926 28.05581593657223 22.120529066359016 86-87 22.161427770793896 27.557654281368325 28.101652108750645 22.17926583908713 88-89 22.21575410729141 27.582942665695104 28.044283623694344 22.157019603319146 90-91 22.273813298366857 27.64866215613463 28.00906047301473 22.068464072483785 92-93 22.321486533694586 27.6359695507584 27.965497633542192 22.077046282004826 94-95 22.178300639486253 27.68745572833889 27.96506879561119 22.16917483656367 96-97 22.361262156780022 27.76266269798423 28.020363615315347 21.8557115299204 98-99 23.345891328980713 29.689089669563014 28.225286672474486 18.73973232898179 100 22.39128593519632 30.601726725394062 22.201450619741554 24.805536719668066 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1214.0 1 1184.5 2 1477.0 3 1955.0 4 2451.5 5 3431.5 6 4482.5 7 5626.0 8 7666.5 9 9157.5 10 8866.5 11 8468.5 12 9207.5 13 11327.5 14 15557.0 15 20361.0 16 24564.5 17 28281.0 18 29174.0 19 26879.0 20 23743.5 21 21117.5 22 20140.0 23 22195.5 24 27022.0 25 34392.0 26 44863.5 27 56896.5 28 68330.0 29 80596.5 30 93092.5 31 105084.0 32 119355.5 33 134678.5 34 149397.0 35 163428.0 36 179062.5 37 192544.5 38 200200.0 39 207375.0 40 216041.0 41 223186.5 42 226508.0 43 230578.0 44 236136.0 45 241178.5 46 243498.0 47 242764.5 48 242299.5 49 241233.0 50 237711.0 51 230602.5 52 222385.0 53 211408.0 54 197183.0 55 183568.0 56 168463.5 57 151841.5 58 136807.0 59 121370.5 60 103938.5 61 85329.5 62 67305.5 63 52377.0 64 39976.0 65 29856.5 66 22174.5 67 16803.0 68 12993.5 69 9645.5 70 6992.0 71 5057.0 72 3572.5 73 2432.0 74 1624.0 75 1109.5 76 744.0 77 460.5 78 285.0 79 205.5 80 150.5 81 110.5 82 85.0 83 66.5 84 48.5 85 28.0 86 15.0 87 12.0 88 9.5 89 6.5 90 5.5 91 2.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00301198873618314 3 5.275234509699285E-4 4 6.806754206063593E-5 5 0.0 6 0.0 7 2.5525328272738473E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 3.7439537274548045E-4 24-25 4.935600623451455E-4 26-27 1.0212846791042686E-4 28-29 0.0027245657318937066 30-31 0.002096874225392499 32-33 0.004245642812959615 34-35 0.009287166292795395 36-37 0.0015229394693511012 38-39 0.0 40-41 1.2198092845609435E-4 42-43 5.875922443085771E-4 44-45 2.5632130317286E-4 46-47 2.6755497295955663E-5 48-49 0.004111932377877408 50-51 0.0034103714474995085 52-53 4.293827139289743E-4 54-55 0.002640972731910533 56-57 0.039870100818769946 58-59 0.06097062201346084 60-61 0.02911786165962577 62-63 0.010721087629175336 64-65 8.899719113381273E-4 66-67 2.3156333715573647E-4 68-69 0.0015085161087135977 70-71 0.01095774522594311 72-73 0.016408619585514508 74-75 0.010015540564087627 76-77 0.011845318273931647 78-79 0.002287043239347715 80-81 0.013595012877298801 82-83 0.04291601034375269 84-85 0.02303710541121233 86-87 0.0038689821382694094 88-89 7.449560092834289E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 60.0 20-21 202.0 22-23 495.0 24-25 551.0 26-27 1768.0 28-29 4681.0 30-31 12232.0 32-33 15714.0 34-35 21900.0 36-37 33288.0 38-39 37936.0 40-41 36600.0 42-43 42060.0 44-45 49694.0 46-47 50523.0 48-49 45850.0 50-51 40520.0 52-53 38550.0 54-55 41954.0 56-57 42749.0 58-59 42611.0 60-61 41267.0 62-63 40109.0 64-65 42051.0 66-67 44444.0 68-69 45175.0 70-71 44002.0 72-73 41744.0 74-75 42797.0 76-77 44486.0 78-79 45971.0 80-81 45648.0 82-83 42628.0 84-85 42492.0 86-87 44073.0 88-89 45887.0 90-91 46514.0 92-93 46313.0 94-95 54348.0 96-97 175294.0 98-99 397917.0 100-101 3943418.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.30388818336779 #Duplication Level Percentage of deduplicated Percentage of total 1 91.83668372651962 81.09536250917903 2 5.970823338726152 10.544938329310337 3 1.2848825670901851 3.403803795992708 4 0.44397511648811344 1.5681891617025625 5 0.18298572077811395 0.8079175313371767 6 0.08744653601495199 0.46331214829723 7 0.05755677251771219 0.35577407632197156 8 0.032762119862050486 0.23144180551588794 9 0.02327916796638157 0.1850076940594676 >10 0.07739426920762758 1.0712410737112372 >50 0.0015493584482651583 0.09407765345457315 >100 5.495359146895219E-4 0.09121672013945287 >500 8.382788749870954E-5 0.04769565111584862 >1k 2.794257863391895E-5 0.040021849862546456 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.4033771030317965E-5 0.0 0.0 0.0 3 0.0 3.4033771030317965E-5 0.0 0.0 0.0 4 0.0 5.105065654547695E-5 0.0 1.7016885515158983E-5 0.0 5 0.0 5.105065654547695E-5 0.0 1.7016885515158983E-5 0.0 6 5.105065654547695E-5 5.105065654547695E-5 0.0 1.7016885515158983E-5 0.0 7 5.105065654547695E-5 5.105065654547695E-5 0.0 1.7016885515158983E-5 0.0 8 5.105065654547695E-5 5.105065654547695E-5 0.0 1.7016885515158983E-5 1.7016885515158983E-5 9 5.105065654547695E-5 1.021013130909539E-4 0.0 1.7016885515158983E-5 1.7016885515158983E-5 10-11 5.105065654547695E-5 1.021013130909539E-4 0.0 3.4033771030317965E-5 1.7016885515158983E-5 12-13 5.105065654547695E-5 1.021013130909539E-4 0.0 5.105065654547695E-5 1.7016885515158983E-5 14-15 5.9559099303056436E-5 1.786772979091693E-4 0.0 1.021013130909539E-4 3.4033771030317965E-5 16-17 6.806754206063593E-5 1.871857406667488E-4 0.0 1.1911819860611287E-4 3.4033771030317965E-5 18-19 8.508442757579491E-5 1.956941834243283E-4 0.0 1.2762664136369237E-4 4.254221378789746E-5 20-21 8.508442757579491E-5 2.042026261819078E-4 0.0 1.3613508412127186E-4 5.105065654547695E-5 22-23 8.508442757579491E-5 2.3823639721222574E-4 0.0 1.7016885515158981E-4 5.105065654547695E-5 24-25 1.0210131309095388E-4 2.807786110001232E-4 0.0 2.042026261819078E-4 5.105065654547695E-5 26-27 1.1911819860611287E-4 3.0630393927286165E-4 0.0 3.2332082478802064E-4 6.806754206063593E-5 28-29 1.1911819860611287E-4 3.0630393927286165E-4 0.0 7.997936192124721E-4 7.657598481821543E-5 30-31 1.1911819860611287E-4 3.4033771030317963E-4 0.0 0.001820806750122011 8.508442757579491E-5 32-33 1.1911819860611287E-4 3.743714813334976E-4 0.0 0.003896866782971407 1.021013130909539E-4 34-35 1.1911819860611287E-4 4.1691369512139505E-4 0.0 0.007079024374306136 1.021013130909539E-4 36-37 1.1911819860611287E-4 4.594559089092925E-4 0.0 0.011724634119944538 1.021013130909539E-4 38-39 1.1911819860611287E-4 4.934896799396104E-4 0.0 0.01821657594397769 1.021013130909539E-4 40-41 1.3613508412127186E-4 5.615572220002464E-4 0.0 0.02511692302037466 1.021013130909539E-4 42-43 1.5315196963643082E-4 5.955909930305644E-4 0.0 0.031523780416832015 1.1060975584853338E-4 44-45 1.6166041239401032E-4 6.466416495760413E-4 0.0 0.03880700741732006 1.1911819860611287E-4 46-47 1.871857406667488E-4 6.636585350912003E-4 0.0 0.04651565655568708 1.1911819860611287E-4 48-49 1.956941834243283E-4 6.806754206063594E-4 0.0 0.05435193233541778 1.1911819860611287E-4 50-51 2.042026261819078E-4 7.827767336973132E-4 0.0 0.06226478409996672 1.1911819860611287E-4 52-53 2.042026261819078E-4 7.827767336973132E-4 0.0 0.06967563774181845 1.1911819860611287E-4 54-55 2.042026261819078E-4 7.827767336973132E-4 0.0 0.0764994088333972 1.1911819860611287E-4 56-57 2.2972795445464628E-4 7.827767336973132E-4 0.0 0.08205542195409661 1.1911819860611287E-4 58-59 2.5525328272738473E-4 7.997936192124721E-4 0.0 0.08706689473831093 1.1911819860611287E-4 60-61 2.5525328272738473E-4 8.083020619700516E-4 0.0 0.09224853637767684 1.1911819860611287E-4 62-63 2.5525328272738473E-4 8.168105047276312E-4 0.0 0.0973706189177397 1.3613508412127186E-4 64-65 2.5525328272738473E-4 8.84878046788267E-4 0.0 0.10241612547298434 1.3613508412127186E-4 66-67 2.6376172548496426E-4 9.018949323034261E-4 0.0 0.10766583465441087 1.3613508412127186E-4 68-69 2.892870537577027E-4 9.35928703333744E-4 0.0 0.11289852695032226 1.3613508412127186E-4 70-71 2.892870537577027E-4 9.444371460913235E-4 0.0 0.11783342374971836 1.5315196963643082E-4 72-73 2.892870537577027E-4 9.52945588848903E-4 0.0 0.1213048683948108 1.5315196963643082E-4 74-75 2.892870537577027E-4 0.0010125046881519595 0.0 0.12400204474896351 1.5315196963643082E-4 76-77 2.892870537577027E-4 0.0010635553446974363 0.0 0.12697149127135876 1.5315196963643082E-4 78-79 2.977954965152822E-4 0.001089080672970175 0.0 0.12899650064766266 1.5315196963643082E-4 80-81 3.0630393927286165E-4 0.001089080672970175 0.0 0.12962612541172353 1.5315196963643082E-4 82-83 3.2332082478802064E-4 0.001089080672970175 0.0 0.1301366319771783 1.7016885515158981E-4 84-85 3.4033771030317963E-4 0.0011060975584853338 0.0 0.13030680083232993 1.7016885515158981E-4 86-87 3.573545958183386E-4 0.0011401313295156517 0.0 0.13048547813023909 1.7016885515158981E-4 88 3.573545958183386E-4 0.0011401313295156517 0.0 0.13048547813023909 1.7016885515158981E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9070 0.0 52.485348 1 GTATCAA 16380 0.0 38.479557 1 TATCAAC 19475 0.0 31.902287 2 TCAACGC 19445 0.0 31.840515 4 ATCAACG 19730 0.0 31.380579 3 CAACGCA 20140 0.0 30.784298 5 AACGCAG 20805 0.0 29.738543 6 TGGTATC 3965 0.0 27.448702 2 GTGGTAT 4240 0.0 26.780045 1 ACGCAGA 24440 0.0 25.350544 7 CGCAGAG 24960 0.0 24.839363 8 GCAGAGT 28585 0.0 21.749323 9 GTACATG 23405 0.0 21.382845 1 GAGTACT 16085 0.0 20.93717 12-13 TACATGG 23105 0.0 20.825962 2 GATCAAC 2975 0.0 20.451853 1 ACATGGG 23040 0.0 20.32628 3 GTACTTT 17415 0.0 19.227545 14-15 CAGAGTA 28545 0.0 19.077963 10-11 CATGGGG 14935 0.0 18.131432 4 >>END_MODULE