##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139574_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15056171 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.13883549808248 33.0 31.0 34.0 30.0 34.0 2 32.27206379364315 34.0 31.0 34.0 30.0 34.0 3 32.323551784846224 34.0 31.0 34.0 30.0 34.0 4 35.955705006272844 37.0 35.0 37.0 35.0 37.0 5 35.81787102444572 37.0 35.0 37.0 35.0 37.0 6 35.83964495355426 37.0 35.0 37.0 35.0 37.0 7 35.75561568741482 37.0 35.0 37.0 33.0 37.0 8 35.72219948883418 37.0 35.0 37.0 33.0 37.0 9 37.35595238656628 39.0 37.0 39.0 34.0 39.0 10-11 37.24840495634647 39.0 37.0 39.0 33.0 39.0 12-13 37.207391739905184 39.0 37.0 39.0 33.0 39.0 14-15 38.39877994212473 40.0 38.0 41.0 33.0 41.0 16-17 38.412786790213794 40.0 38.0 41.0 33.0 41.0 18-19 38.40780810074487 40.0 38.0 41.0 33.5 41.0 20-21 38.37558867460106 40.0 38.0 41.0 34.0 41.0 22-23 38.27181923446493 40.0 38.0 41.0 33.5 41.0 24-25 38.17716597991207 40.0 38.0 41.0 33.0 41.0 26-27 38.004038025466365 40.0 37.0 41.0 33.0 41.0 28-29 37.866183961188796 40.0 37.0 41.0 33.0 41.0 30-31 37.70972415332637 40.0 37.0 41.0 32.0 41.0 32-33 37.90445977034011 40.0 37.0 41.0 33.0 41.0 34-35 37.88508811998584 40.0 37.0 41.0 33.0 41.0 36-37 37.79578002574759 40.0 37.0 41.0 33.0 41.0 38-39 37.67937961595675 40.0 37.0 41.0 33.0 41.0 40-41 37.625496174668456 40.0 37.0 41.0 32.5 41.0 42-43 37.51153156808707 39.5 36.5 41.0 32.0 41.0 44-45 37.55493254583004 39.5 36.5 41.0 32.5 41.0 46-47 37.695983985741485 40.0 37.0 41.0 32.5 41.0 48-49 37.61964648261203 40.0 37.0 41.0 32.0 41.0 50-51 37.490787821312225 40.0 36.0 41.0 32.0 41.0 52-53 37.33763485966836 39.0 36.0 41.0 31.0 41.0 54-55 37.221890752885606 39.0 36.0 41.0 31.0 41.0 56-57 37.04055636393282 39.0 35.0 40.5 31.0 41.0 58-59 36.884594672241036 39.0 35.0 40.0 31.0 41.0 60-61 36.64636088799262 38.0 35.0 40.0 31.0 41.0 62-63 36.374147037362576 38.0 35.0 40.0 30.0 41.0 64-65 36.145348917812605 37.5 34.5 40.0 30.0 41.0 66-67 35.84643224697683 37.0 34.0 40.0 29.5 41.0 68-69 35.518925999807095 36.5 34.0 39.0 29.0 41.0 70-71 35.211434072374715 36.0 34.0 39.0 29.0 40.5 72-73 34.9010433229265 36.0 34.0 39.0 29.0 40.0 74-75 34.50968135693131 35.0 33.0 38.0 29.0 40.0 76-77 33.45142529205782 34.5 31.5 36.5 27.5 39.0 78-79 33.79466455469287 35.0 33.0 37.0 28.0 39.0 80-81 33.67403648028164 35.0 33.0 36.0 28.5 38.5 82-83 33.44827952187653 35.0 33.0 36.0 28.0 37.5 84-85 33.22817752858159 35.0 32.0 35.5 28.0 37.0 86-87 33.017383558462505 34.5 32.0 35.0 28.0 36.5 88-89 32.786601661083694 34.0 32.0 35.0 27.0 36.0 90-91 32.6428760292696 34.0 32.0 35.0 27.0 36.0 92-93 32.54999323607671 34.0 32.0 35.0 27.0 35.5 94-95 32.49970025472394 34.0 32.0 35.0 27.0 35.0 96-97 32.437429754104585 34.0 32.0 35.0 27.0 35.0 98-99 32.57321956162434 34.0 32.0 35.0 28.0 35.0 100-101 31.635366037450673 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 12.0 20 96.0 21 649.0 22 3016.0 23 10434.0 24 26808.0 25 56374.0 26 99713.0 27 156186.0 28 220797.0 29 289726.0 30 365712.0 31 452582.0 32 561092.0 33 710603.0 34 943196.0 35 1300271.0 36 1977696.0 37 3090997.0 38 3220007.0 39 1515451.0 40 54751.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.7990877627519 21.668935614506506 14.49386434306571 25.03811227967589 2 14.597689888771809 22.209566494653124 40.18670316156665 23.00604045500842 3 17.5796422609706 26.482682748488973 31.16473637287993 24.772938617660493 4 12.548413014847709 18.47469804153485 38.124917516968345 30.8519714266491 5 12.927835370626436 37.9799286286002 35.9964562039047 13.095779796868673 6 30.501745762584658 38.20266786289821 18.128227953840323 13.16735842067681 7 26.18192899110936 32.54442978895498 23.518104304208553 17.755536915727113 8 24.29953804323822 37.24793641092413 21.10652170462198 17.34600384121567 9 25.384329123254513 16.087549749534595 21.19487750238756 37.33324362482334 10-11 24.17635267293391 26.65596717784356 29.246546150412346 19.921133998810188 12-13 24.681288489616648 24.322634885058093 29.159588450476555 21.836488174848707 14-15 21.875963682931072 25.81549452380688 26.46046262359799 25.84807916966405 16-17 21.777098948854277 28.7585465326777 27.30828863311071 22.15606588535732 18-19 21.795126397010236 28.101819513075405 28.72174472513629 21.38130936477807 20-21 22.42561114983541 27.361239140424143 28.565953462025544 21.647196247714902 22-23 22.192851695669617 27.41285828543794 28.372403617995385 22.02188640089706 24-25 22.1030539338398 27.4704575340892 28.48783857426586 21.93864995780514 26-27 22.061122736001995 27.618992411908515 28.42142343042202 21.898461421667463 28-29 22.04458731127471 27.64068068321091 28.384755968782894 21.92997603673148 30-31 22.147703398273514 27.59931148323343 28.37491692855714 21.878068189935913 32-33 22.041415184232033 27.730406356082998 28.27350190723824 21.954676552446724 34-35 22.202132783398767 27.640628258919335 28.354577124721175 21.802661832960727 36-37 22.104565656086525 27.648958024623816 28.259353492067056 21.987122827222603 38-39 21.99181634142131 27.640399480128604 28.360546369857882 22.007237808592212 40-41 22.169495991559458 27.51634760235906 28.29421865723438 22.019937748847102 42-43 22.112451064763153 27.63314134856229 28.10558230972216 22.148825276952397 44-45 22.111290108431376 27.776364559671517 27.93434545412994 22.177999877767167 46-47 22.230975862869457 27.64154636340448 27.716010531049367 22.411467242676697 48-49 22.16764657533935 27.740189252772357 27.70565568418131 22.386508487706987 50-51 22.116538106419448 27.86276294018586 27.632576643859093 22.3881223095356 52-53 22.23489115109402 27.81159482560915 27.594315806229204 22.35919821706763 54-55 22.219278802007473 27.701724778348375 27.58129715650231 22.49769926314184 56-57 22.277689326986984 27.822261012431877 27.477823541572953 22.42222611900819 58-59 22.156046375560084 27.872901189229538 27.592003290920463 22.379049144289915 60-61 22.279919156500945 27.86867149186633 27.48378455593279 22.36762479569994 62-63 22.20713062976956 27.98696933276589 27.449302426052007 22.356597611412543 64-65 22.18070152879976 27.905146149988603 27.433676158345598 22.480476162866044 66-67 22.247627781946193 27.9438175543506 27.268616604077405 22.5399380596258 68-69 22.232840386934036 27.91371252285077 27.31398306301753 22.539464027197663 70-71 22.23915231253912 27.695923942974087 27.37307612599802 22.691847618488772 72-73 22.294276773276238 27.705102535339332 27.339428988589553 22.661191702794877 74-75 22.230088768673493 27.824875579565273 27.286641995264226 22.65839365649701 76-77 22.35410104935356 27.820286102525564 27.213987102897754 22.611625745223122 78-79 22.33091206066161 27.770410149037794 27.212252447316104 22.686425342984492 80-81 22.286637444947015 27.821829393879526 27.223773448331933 22.66775971284153 82-83 22.35959602641411 27.770338870103423 27.300585187155065 22.569479916327403 84-85 22.431039819992556 27.797400495222984 27.228833412471126 22.54272627231333 86-87 22.302515294747856 27.843393520326664 27.267076354216552 22.58701483070893 88-89 22.335455579099577 27.812599623217515 27.321689248515753 22.53025554916716 90-91 22.353413296814363 27.86255642909766 27.318317408916414 22.465712865171568 92-93 22.39420912525201 27.790507741392474 27.36885141615612 22.446431717199395 94-95 22.137044311266653 27.86175874477968 27.47117861841552 22.530018325538144 96-97 22.049941249559307 27.917196926388787 27.544854650423193 22.48800717362871 98-99 22.20384001670908 28.458681777384427 27.636989329313444 21.70048887659305 100-101 25.07868179533366 36.29300229267077 28.74079986733336 9.887516044662206 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4928.0 1 4262.5 2 4910.5 3 6609.5 4 8557.0 5 12525.0 6 15826.0 7 18102.0 8 19242.0 9 18706.0 10 17429.5 11 16260.0 12 18030.5 13 24018.5 14 37175.5 15 54726.5 16 67914.5 17 74029.0 18 75474.5 19 74705.0 20 72523.5 21 70978.0 22 72979.5 23 80955.5 24 95226.5 25 115840.5 26 142071.5 27 170948.5 28 202343.5 29 235131.5 30 266111.0 31 296817.5 32 329262.0 33 362440.0 34 394373.5 35 426201.5 36 462357.0 37 494391.5 38 518552.5 39 541095.0 40 562924.5 41 581108.5 42 594550.0 43 608031.5 44 620019.0 45 632003.0 46 647000.5 47 658090.5 48 657705.5 49 650509.0 50 641322.5 51 624724.0 52 597810.5 53 565735.5 54 530562.5 55 492127.5 56 452427.5 57 409755.5 58 365532.0 59 318073.0 60 267460.5 61 219293.0 62 175715.0 63 136286.5 64 102469.0 65 77109.0 66 57880.5 67 43909.5 68 33772.5 69 25073.0 70 18174.5 71 13038.5 72 9242.5 73 6403.0 74 4409.0 75 3015.0 76 2056.5 77 1401.0 78 981.5 79 717.0 80 519.0 81 368.5 82 271.0 83 185.5 84 123.0 85 92.0 86 74.5 87 64.0 88 46.5 89 30.0 90 20.0 91 12.5 92 8.5 93 4.5 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012353738543484927 3 0.0 4 2.922389762974929E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.003347464637589464 18-19 0.0 20-21 0.002138757825396062 22-23 0.0 24-25 3.3555109350121254E-4 26-27 0.0034666285813921014 28-29 0.0 30-31 1.3654420472092595E-4 32-33 7.712563766375426E-4 34-35 8.610802194394254E-4 36-37 0.009977652685455576 38-39 0.011368858386466885 40-41 0.025608652354666542 42-43 0.002129277681824379 44-45 0.001314837900487711 46-47 0.0017407727089602458 48-49 0.0017063856363282678 50-51 5.7462143490945166E-5 52-53 1.5228798005114484E-4 54-55 0.0061171073528179494 56-57 0.003674999614180554 58-59 0.0038787446031256167 60-61 0.0016029593281849666 62-63 4.755919316902706E-4 64-65 7.067999867494421E-4 66-67 6.181714449285037E-4 68-69 1.9973135334050288E-5 70-71 0.0 72-73 1.1509495868460931E-4 74-75 2.5855696356039945E-4 76-77 0.0013840898407213114 78-79 0.001882829540305878 80-81 0.01022276850490459 82-83 0.00929036213387083 84-85 0.012050034491302777 86-87 0.005698681327900376 88-89 0.08787615607277817 90-91 3.397205908190845E-4 92-93 3.4253937257650335E-5 94-95 2.1580075026392934E-4 96-97 0.014743848985607615 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 423.0 20-21 1502.0 22-23 2961.0 24-25 5987.0 26-27 8644.0 28-29 15260.0 30-31 35159.0 32-33 47648.0 34-35 69057.0 36-37 104265.0 38-39 108063.0 40-41 114031.0 42-43 131850.0 44-45 153846.0 46-47 155465.0 48-49 145608.0 50-51 135409.0 52-53 126818.0 54-55 145441.0 56-57 154156.0 58-59 160129.0 60-61 159747.0 62-63 158125.0 64-65 170691.0 66-67 184541.0 68-69 178426.0 70-71 176233.0 72-73 173248.0 74-75 177151.0 76-77 177686.0 78-79 190061.0 80-81 193262.0 82-83 186507.0 84-85 188380.0 86-87 201494.0 88-89 212979.0 90-91 229019.0 92-93 245140.0 94-95 311688.0 96-97 407000.0 98-99 1273647.0 100-101 8039424.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.17985084763659 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3475627633208 75.21264507016193 2 7.285316066126188 12.265536396487859 3 1.8583696442710245 4.693118384235309 4 0.6894841215403344 2.3216268205231634 5 0.3193173355978196 1.3440042841844584 6 0.16430189268909554 0.8298545292331474 7 0.09762592810700188 0.5752695246836658 8 0.058554463802098916 0.39432848234592177 9 0.04080446975706462 0.30914227602599376 >10 0.1349901836863278 1.7565827660704008 >50 0.002905509836199295 0.1653867874031257 >100 7.26892474508507E-4 0.09729591887477912 >500 1.358125549878208E-5 0.007419809723750166 >1k 2.7147536024449924E-5 0.027788950046403624 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.6567179663408447E-5 0.0 0.0 0.0 5 0.0 3.985076949511267E-5 0.0 0.0 0.0 6 0.0 3.985076949511267E-5 0.0 0.0 6.641794915852112E-6 7 0.0 3.985076949511267E-5 0.0 0.0 1.3283589831704223E-5 8 0.0 3.985076949511267E-5 0.0 0.0 1.3283589831704223E-5 9 0.0 8.634333390607745E-5 0.0 6.641794915852112E-6 1.3283589831704223E-5 10-11 0.0 8.634333390607745E-5 0.0 1.3283589831704223E-5 1.9925384747556334E-5 12-13 0.0 9.962692373778167E-5 0.0 2.3246282205482392E-5 1.9925384747556334E-5 14-15 0.0 1.19552308485338E-4 0.0 2.6567179663408447E-5 2.98880771213345E-5 16-17 0.0 1.19552308485338E-4 0.0 2.6567179663408447E-5 4.649256441096478E-5 18-19 0.0 1.2287320594326406E-4 0.0 2.98880771213345E-5 5.9776154242669E-5 20-21 0.0 1.3947769323289434E-4 0.0 5.9776154242669E-5 5.9776154242669E-5 22-23 0.0 1.5940307798045067E-4 0.0 1.361567957749683E-4 7.638064153229929E-5 24-25 0.0 1.8929115510178516E-4 0.0 2.623508991761584E-4 8.634333390607745E-5 26-27 0.0 2.1253743730726757E-4 0.0 5.745152602212076E-4 8.634333390607745E-5 28-29 6.641794915852112E-6 2.1253743730726757E-4 0.0 0.0025205611705658762 8.634333390607745E-5 30-31 6.641794915852112E-6 2.590300017182323E-4 0.0 0.009069370957596058 8.96642313640035E-5 32-33 6.641794915852112E-6 2.723135915499366E-4 0.0 0.023428931565668325 9.298512882192956E-5 34-35 6.641794915852112E-6 3.0220166867127107E-4 0.0 0.0436664806742697 9.962692373778167E-5 36-37 6.641794915852112E-6 3.3208974579260555E-4 0.0 0.07162843727000709 9.962692373778167E-5 38-39 6.641794915852112E-6 3.520151305401619E-4 0.0 0.11257510292623536 9.962692373778167E-5 40-41 6.641794915852112E-6 3.6861961782979214E-4 0.0 0.16631054469293688 1.0294782119570772E-4 42-43 6.641794915852112E-6 3.819032076614964E-4 0.0 0.19872250388229518 1.0626871865363379E-4 44-45 6.641794915852112E-6 4.1511218224075697E-4 0.0 0.24702163651037173 1.0626871865363379E-4 46-47 6.641794915852112E-6 4.4167936190416543E-4 0.0 0.3015540936669755 1.0626871865363379E-4 48-49 6.641794915852112E-6 4.5164205427794356E-4 0.0 0.3444268798488009 1.0626871865363379E-4 50-51 6.641794915852112E-6 5.147391059785386E-4 0.0 0.3846296644744537 1.0626871865363379E-4 52-53 6.641794915852112E-6 5.213809008943907E-4 0.0 0.42633017385363114 1.0626871865363379E-4 54-55 6.641794915852112E-6 5.37985388184021E-4 0.0 0.5177146301008404 1.0958961611155984E-4 56-57 6.641794915852112E-6 5.446271830998732E-4 0.0 0.5963601236994452 1.1291051356948589E-4 58-59 6.641794915852112E-6 5.678734653053555E-4 0.0 0.6599353846339817 1.1291051356948589E-4 60-61 6.641794915852112E-6 5.811570551370597E-4 0.0 0.696428726799131 1.19552308485338E-4 62-63 6.641794915852112E-6 6.044033373425421E-4 0.0 0.7275455359798981 1.19552308485338E-4 64-65 6.641794915852112E-6 6.641794915852111E-4 0.0 0.743140470442319 1.19552308485338E-4 66-67 6.641794915852112E-6 6.641794915852111E-4 0.0 0.7519541322956547 1.2287320594326406E-4 68-69 6.641794915852112E-6 6.708212865010632E-4 0.0 0.7601501072218162 1.261941034011901E-4 70-71 6.641794915852112E-6 6.807839788748413E-4 0.0 0.7681269029157546 1.261941034011901E-4 72-73 6.641794915852112E-6 6.841048763327675E-4 0.0 0.7753398921943699 1.3283589831704224E-4 74-75 6.641794915852112E-6 6.973884661644717E-4 0.0 0.7818123213398679 1.3283589831704224E-4 76-77 6.641794915852112E-6 7.405601331175104E-4 0.0 0.7875973247115751 1.3283589831704224E-4 78-79 6.641794915852112E-6 7.505228254912886E-4 0.0 0.7930635219273214 1.3283589831704224E-4 80-81 6.641794915852112E-6 7.505228254912886E-4 0.0 0.7959028892538482 1.361567957749683E-4 82-83 6.641794915852112E-6 7.505228254912886E-4 0.0 0.7976762484963806 1.3947769323289434E-4 84-85 6.641794915852112E-6 7.505228254912886E-4 0.0 0.7992935255583906 1.3947769323289434E-4 86-87 6.641794915852112E-6 7.505228254912886E-4 0.0 0.799499421200782 1.3947769323289434E-4 88-89 6.641794915852112E-6 7.903735949864012E-4 0.0 0.7995724809448564 1.3947769323289434E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15155 0.0 43.314297 1 GTATCAA 25485 0.0 32.03022 1 TCAACGC 30905 0.0 25.6621 4 ATCAACG 31325 0.0 25.370913 3 CAACGCA 31695 0.0 25.061588 5 AACGCAG 32970 0.0 24.067295 6 TATCAAC 33545 0.0 23.926762 2 GTACATG 38380 0.0 20.394579 1 ACGCAGA 38950 0.0 20.382872 7 TACATGG 38115 0.0 20.003952 2 CGCAGAG 40160 0.0 19.779058 8 ACATGGG 38955 0.0 18.94509 3 CATGGGG 28875 0.0 17.268583 4 AGAGTAC 42370 0.0 16.838388 10-11 GCAGAGT 47955 0.0 16.469011 9 TATACCG 1110 0.0 15.670291 5 GAGTACT 27360 0.0 15.607823 12-13 CAGAGTA 46200 0.0 15.442479 10-11 GTGGTAT 8685 0.0 14.925622 1 TATACTG 8145 0.0 14.84713 5 >>END_MODULE