##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139573_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14430159 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15575005098697 33.0 31.0 34.0 30.0 34.0 2 32.286470578737216 34.0 31.0 34.0 30.0 34.0 3 32.33846155125526 34.0 31.0 34.0 30.0 34.0 4 35.96436955407075 37.0 35.0 37.0 35.0 37.0 5 35.82994393894066 37.0 35.0 37.0 35.0 37.0 6 35.84911545326701 37.0 35.0 37.0 35.0 37.0 7 35.763143496894244 37.0 35.0 37.0 33.0 37.0 8 35.72908365042963 37.0 35.0 37.0 33.0 37.0 9 37.36022395872423 39.0 37.0 39.0 34.0 39.0 10-11 37.2590476307295 39.0 37.0 39.0 33.5 39.0 12-13 37.216807209123616 39.0 37.0 39.0 33.0 39.0 14-15 38.41459726812435 40.0 38.0 41.0 33.0 41.0 16-17 38.43080315331245 40.0 38.0 41.0 33.0 41.0 18-19 38.423716606310435 40.0 38.0 41.0 33.5 41.0 20-21 38.39110400986543 40.0 38.0 41.0 34.0 41.0 22-23 38.28859172388645 40.0 38.0 41.0 33.5 41.0 24-25 38.19882683238038 40.0 38.0 41.0 33.0 41.0 26-27 38.02501707289176 40.0 37.0 41.0 33.0 41.0 28-29 37.88880195111413 40.0 37.0 41.0 33.0 41.0 30-31 37.73726871496724 40.0 37.0 41.0 32.5 41.0 32-33 37.93035273072176 40.0 37.0 41.0 33.0 41.0 34-35 37.910722734491074 40.0 37.0 41.0 33.0 41.0 36-37 37.82566023298388 40.0 37.0 41.0 33.0 41.0 38-39 37.712177753506936 40.0 37.0 41.0 33.0 41.0 40-41 37.658790639513875 40.0 37.0 41.0 33.0 41.0 42-43 37.54531347252096 40.0 37.0 41.0 32.0 41.0 44-45 37.58714821906227 39.5 36.5 41.0 32.5 41.0 46-47 37.72642008085943 40.0 37.0 41.0 33.0 41.0 48-49 37.64830892372066 40.0 37.0 41.0 32.0 41.0 50-51 37.5185938352445 40.0 36.0 41.0 32.0 41.0 52-53 37.36221309178649 39.0 36.0 41.0 31.0 41.0 54-55 37.248643624307576 39.0 36.0 41.0 31.0 41.0 56-57 37.069466408196284 39.0 35.0 40.5 31.0 41.0 58-59 36.911663813505015 39.0 35.0 40.0 31.0 41.0 60-61 36.67199502539175 38.0 35.0 40.0 31.0 41.0 62-63 36.39946999238538 38.0 35.0 40.0 30.0 41.0 64-65 36.16698268928174 37.5 34.5 40.0 30.0 41.0 66-67 35.866680206955415 37.0 34.0 40.0 30.0 41.0 68-69 35.53771415515119 36.5 34.0 39.0 29.0 41.0 70-71 35.22920904889922 36.0 34.0 39.0 29.0 40.5 72-73 34.91555013145209 36.0 34.0 39.0 29.0 40.0 74-75 34.52915999143603 35.0 33.0 38.0 29.0 40.0 76-77 33.46927316639459 34.5 31.5 36.5 27.5 39.0 78-79 33.80620541004563 35.0 33.0 37.0 28.5 39.0 80-81 33.68721867570447 35.0 33.0 36.0 29.0 38.5 82-83 33.46403837175079 35.0 33.0 36.0 29.0 37.0 84-85 33.24823875575899 35.0 32.5 35.5 28.0 37.0 86-87 33.0423245973763 34.5 32.0 35.0 28.0 36.5 88-89 32.81628165042498 34.0 32.0 35.0 27.0 36.0 90-91 32.67553007276018 34.0 32.0 35.0 27.0 36.0 92-93 32.58601863362948 34.0 32.0 35.0 27.0 35.5 94-95 32.53753059163206 34.0 32.0 35.0 27.0 35.0 96-97 32.47623280652613 34.0 32.0 35.0 27.0 35.0 98-99 32.608875841119186 34.0 32.0 35.0 28.5 35.0 100-101 31.66844647432456 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 0.0 19 14.0 20 111.0 21 650.0 22 2918.0 23 10023.0 24 25529.0 25 54106.0 26 94943.0 27 148802.0 28 209487.0 29 275783.0 30 347908.0 31 428611.0 32 531637.0 33 672748.0 34 892725.0 35 1232367.0 36 1869592.0 37 2943839.0 38 3113872.0 39 1514153.0 40 60340.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.42507494200168 21.329917431956225 14.079186514854063 25.165821111188038 2 14.845670317744613 22.208068823356363 39.570616324271995 23.37564453462703 3 17.758030247622358 26.29916967650876 30.97581253262698 24.9669875432419 4 12.584309809930788 18.213406798228593 38.00066832468106 31.201615067159562 5 12.970771839728169 37.97536118624888 35.96459332152889 13.089273652494057 6 30.834566687726728 37.96891635081776 18.00847793846208 13.18803902299344 7 26.476361071281335 32.41172879661271 23.382389618853125 17.729520513252833 8 24.66778086090389 36.9057957019046 21.04962253014676 17.376800907044753 9 25.559392658112777 15.854565427865348 21.05527042356221 37.53077149045967 10-11 24.391221191672248 26.56976267551868 29.136397596173403 19.902618536635668 12-13 24.78803941106955 24.178399558868342 29.166833851241698 21.866727178820415 14-15 21.956549473917786 25.715118592941355 26.332675890820052 25.995656042320807 16-17 21.87733600708346 28.650799753189098 27.2300327301306 22.24183150959684 18-19 21.933358461261584 28.01521452397025 28.607207307972143 21.444219706796023 20-21 22.512930803718774 27.296800603913972 28.45968844789293 21.730580144474324 22-23 22.313350899774733 27.269758590463233 28.321953405657613 22.09493710410442 24-25 22.127918751743124 27.448088260200628 28.382264213651037 22.041728774405215 26-27 22.1261252951242 27.52951848872828 28.337582728838402 22.00677348730912 28-29 22.072493458164917 27.556727676381325 28.34168544010079 22.029093425352965 30-31 22.320972654300952 27.479147769101758 28.241684593845417 21.958194982751873 32-33 22.107102841094655 27.608516111420993 28.222319016790028 22.062062030694324 34-35 22.235914158743856 27.555475490201047 28.248000432408816 21.960609918646277 36-37 22.178076587428418 27.5146916683523 28.207170668134985 22.100061076084305 38-39 22.052206003920777 27.55903675934342 28.302557817022656 22.086199419713147 40-41 22.236787755039046 27.45269955194799 28.21692251316734 22.093590179845616 42-43 22.16767549711051 27.535965031920846 28.03841600659039 22.25794346437826 44-45 22.16597641456957 27.64691723255348 27.9093716136176 22.277734739259344 46-47 22.285391993456955 27.54459255625863 27.709924713544687 22.460090736739726 48-49 22.215588082400092 27.65430375707303 27.680623721640767 22.449484438886113 50-51 22.21133438662285 27.734170273917425 27.62842572755116 22.426069611908567 52-53 22.305798196463094 27.664434186764925 27.571780140529462 22.457987476242515 54-55 22.298949745823514 27.580772796974905 27.558773708845504 22.561503748356078 56-57 22.323353976309992 27.690031505941405 27.468984898189895 22.517629619558708 58-59 22.223527460870386 27.715389321748958 27.5681675085521 22.49291570882856 60-61 22.3432084483159 27.73845626667259 27.47609177767635 22.44224350733517 62-63 22.273760635596528 27.880236735440494 27.428456458645545 22.417546170317433 64-65 22.235942335405078 27.76794137771949 27.427859320004355 22.568256966871076 66-67 22.327381708923905 27.80955486322872 27.244860643614828 22.61820278423255 68-69 22.269140529428704 27.77424737519117 27.289960597706674 22.666651497673456 70-71 22.255595125787295 27.606889319919926 27.380782705631113 22.756732848661667 72-73 22.30648998747278 27.60068137707662 27.313944561011045 22.778884074439556 74-75 22.26101930240522 27.705380921024148 27.275931871117287 22.757667905453346 76-77 22.468036851715645 27.634275211155884 27.201314923310072 22.6963730138184 78-79 22.392792381400977 27.57908305611406 27.1879190453065 22.840205517178454 80-81 22.367259207967056 27.676342128430253 27.17051723774456 22.785881425858133 82-83 22.42009155367171 27.600186908042712 27.30203582168392 22.67768571660166 84-85 22.44767687294542 27.63855596888706 27.231372413878635 22.682394744288878 86-87 22.391131516628793 27.6233992537112 27.31006957805149 22.675399651608515 88-89 22.382724118216597 27.6197748760366 27.322979954229048 22.67452105151775 90-91 22.41418067730579 27.652556736090343 27.33535129717819 22.597911289425674 92-93 22.484292206719108 27.504931374542107 27.40459476887499 22.606181649863796 94-95 22.239560014531804 27.49782009742219 27.551942362452436 22.710677525593574 96-97 22.17251678009221 27.55223312957949 27.615282717739255 22.659967372589044 98-99 22.311559962683287 28.11543380680958 27.716790935556574 21.856215294950566 100-101 25.24297934927011 35.87653057579231 28.87903894959638 10.0014511253412 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2943.0 1 2717.0 2 3601.5 3 4960.0 4 6724.5 5 10479.5 6 13565.5 7 15897.5 8 17336.0 9 17050.5 10 15928.5 11 14883.5 12 16377.0 13 21887.0 14 34241.5 15 50277.5 16 62240.0 17 67832.5 18 68995.5 19 67867.5 20 65172.0 21 63069.5 22 64451.5 23 71609.0 24 84419.5 25 103156.5 26 126360.0 27 152170.0 28 182326.5 29 215462.0 30 247869.0 31 278671.0 32 309761.5 33 341418.5 34 372760.0 35 404010.5 36 437992.0 37 467813.0 38 493338.0 39 518033.5 40 539039.0 41 557800.0 42 571660.5 43 584188.0 44 597750.0 45 611621.0 46 625231.0 47 633205.5 48 634518.0 49 631662.5 50 623993.5 51 609375.0 52 584241.5 53 551186.5 54 515269.5 55 478744.5 56 441660.5 57 400763.0 58 358415.5 59 311454.5 60 260811.5 61 214231.5 62 172842.5 63 135683.5 64 102383.5 65 76710.0 66 58525.5 67 45310.5 68 34876.5 69 25955.0 70 19028.5 71 13842.5 72 9644.0 73 6517.5 74 4508.0 75 3066.5 76 2103.5 77 1434.5 78 997.5 79 708.5 80 508.5 81 371.5 82 272.0 83 191.0 84 131.5 85 94.0 86 71.5 87 52.5 88 34.5 89 24.0 90 18.0 91 15.5 92 13.5 93 8.5 94 3.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001205807919372198 3 0.0 4 3.257067368419156E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.003385271083984591 18-19 0.0 20-21 0.0021795593783356096 22-23 0.0 24-25 2.8077090539569923E-4 26-27 0.003328895384087776 28-29 0.0 30-31 1.3198971049897912E-4 32-33 7.764396052023961E-4 34-35 8.315485029838441E-4 36-37 0.01016192088335158 38-39 0.011614011528401087 40-41 0.025032635073069995 42-43 0.0018283149739140043 44-45 0.0010769586296676865 46-47 0.001752309061274472 48-49 0.0017936685944527537 50-51 7.48818944040985E-5 52-53 1.0584702360626782E-4 54-55 0.006285603871931985 56-57 0.0037113001953833664 58-59 0.0035786541747049793 60-61 0.0016117776066098051 62-63 4.399048573774464E-4 64-65 6.803538747287089E-4 66-67 6.65264491708977E-4 68-69 1.2501915918614527E-5 70-71 0.0 72-73 1.3304440095084687E-4 74-75 2.482735947137412E-4 76-77 0.001468435081214854 78-79 0.002076432771196839 80-81 0.011399207185826099 82-83 0.010100985192681527 84-85 0.01295431264308256 86-87 0.006621544423671664 88-89 0.08802674990887684 90-91 3.3138883403399476E-4 92-93 4.626173326060304E-5 94-95 2.3744722075943008E-4 96-97 0.014612043687608047 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 384.0 20-21 1320.0 22-23 2584.0 24-25 5138.0 26-27 6410.0 28-29 12192.0 30-31 31576.0 32-33 45177.0 34-35 65500.0 36-37 99875.0 38-39 102216.0 40-41 108036.0 42-43 125205.0 44-45 147301.0 46-47 149268.0 48-49 140196.0 50-51 131044.0 52-53 121156.0 54-55 138712.0 56-57 146259.0 58-59 155040.0 60-61 155872.0 62-63 152622.0 64-65 166146.0 66-67 178758.0 68-69 175962.0 70-71 174083.0 72-73 169716.0 74-75 174799.0 76-77 175719.0 78-79 189068.0 80-81 190575.0 82-83 182250.0 84-85 186001.0 86-87 199403.0 88-89 210675.0 90-91 229028.0 92-93 240473.0 94-95 302804.0 96-97 385943.0 98-99 1211174.0 100-101 7644499.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.08112862010829 #Duplication Level Percentage of deduplicated Percentage of total 1 89.65643860849657 75.38414546261843 2 6.991167047758752 11.756504314945328 3 1.7968646564814308 4.532472248836257 4 0.6882109578996669 2.3146221627571935 5 0.31266741845646256 1.3144714713277525 6 0.1817191993771028 0.9167493225341569 7 0.09941347186069194 0.5851157839863248 8 0.0697828011045362 0.4693933340113555 9 0.04584894065263586 0.34695276084989884 >10 0.1529021727135792 2.0201129913857563 >50 0.003983336457006219 0.2199290347482866 >100 9.863326082383504E-4 0.13149241406789142 >500 1.505613331885249E-5 0.008038697931359981 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.929930571104587E-6 2 1.3859861142209174E-5 1.3859861142209174E-5 0.0 6.929930571104587E-6 6.929930571104587E-6 3 1.3859861142209174E-5 1.3859861142209174E-5 0.0 6.929930571104587E-6 6.929930571104587E-6 4 1.3859861142209174E-5 2.078979171331376E-5 0.0 2.078979171331376E-5 6.929930571104587E-6 5 1.3859861142209174E-5 2.078979171331376E-5 0.0 2.078979171331376E-5 6.929930571104587E-6 6 4.157958342662752E-5 2.078979171331376E-5 0.0 2.7719722284418348E-5 6.929930571104587E-6 7 4.157958342662752E-5 2.078979171331376E-5 0.0 2.7719722284418348E-5 6.929930571104587E-6 8 4.157958342662752E-5 2.078979171331376E-5 0.0 3.464965285552294E-5 1.3859861142209174E-5 9 5.5439444568836695E-5 5.5439444568836695E-5 0.0 6.929930571104588E-5 2.7719722284418348E-5 10-11 5.5439444568836695E-5 5.5439444568836695E-5 0.0 9.008909742435963E-5 2.7719722284418348E-5 12-13 5.890440985438899E-5 5.5439444568836695E-5 0.0 1.1434385442322568E-4 2.7719722284418348E-5 14-15 6.583434042549359E-5 1.0048399328101653E-4 0.0 1.2127378499433028E-4 4.8509513997732105E-5 16-17 8.315916685325504E-5 1.0394895856656881E-4 0.0 1.4206357670764404E-4 6.236937513994129E-5 18-19 8.315916685325504E-5 1.074139238521211E-4 0.0 1.9750302127648074E-4 6.583434042549359E-5 20-21 8.315916685325504E-5 1.2473875027988257E-4 0.0 3.638213549829908E-4 6.929930571104588E-5 22-23 9.701902799546422E-5 1.3166868085098715E-4 0.0 7.276427099659816E-4 8.662413213880735E-5 24-25 1.1087888913767339E-4 1.3859861142209175E-4 0.0 0.001451820454646411 1.0394895856656881E-4 26-27 1.2473875027988257E-4 1.4552854199319633E-4 0.0 0.003922340703245196 1.0394895856656881E-4 28-29 1.2473875027988257E-4 1.4552854199319633E-4 0.0 0.02060614855317949 1.0394895856656881E-4 30-31 1.2473875027988257E-4 1.697832989920624E-4 0.0 0.03363095306157056 1.074139238521211E-4 32-33 1.2473875027988257E-4 1.7671322956316698E-4 0.0 0.047099273126512325 1.2473875027988257E-4 34-35 1.2473875027988257E-4 2.0443295184758534E-4 0.0 0.06665207223288391 1.3166868085098715E-4 36-37 1.2473875027988257E-4 2.2868770884645139E-4 0.0 0.09440990913544334 1.3166868085098715E-4 38-39 1.2473875027988257E-4 2.3561763941755596E-4 0.0 0.13585782388121986 1.3166868085098715E-4 40-41 1.2473875027988257E-4 2.841271534152881E-4 0.0 0.19405191585207066 1.3859861142209175E-4 42-43 1.3166868085098715E-4 3.014519798430496E-4 0.0 0.2282441932899007 1.3859861142209175E-4 44-45 1.3166868085098715E-4 3.4303156326967704E-4 0.0 0.27858667392368996 1.3859861142209175E-4 46-47 1.3859861142209175E-4 3.672863202685431E-4 0.0 0.3356927667948773 1.4899350727874862E-4 48-49 1.3859861142209175E-4 3.672863202685431E-4 0.0 0.3805398124857806 1.593884031354055E-4 50-51 1.4899350727874862E-4 3.880761119818569E-4 0.0 0.4241325407433141 1.593884031354055E-4 52-53 1.5245847256430093E-4 3.9500604255296147E-4 0.0 0.4691077901497828 1.663183337065101E-4 54-55 1.5245847256430093E-4 3.9847100783851376E-4 0.0 0.5728142011463631 1.8017819484871927E-4 56-57 1.663183337065101E-4 4.088659036951706E-4 0.0 0.6625117574934551 1.8710812541982384E-4 58-59 1.8017819484871927E-4 4.123308689807229E-4 0.0 0.7375559756479468 1.8710812541982384E-4 60-61 1.8710812541982384E-4 4.331206606940367E-4 0.0 0.7752651928506125 1.9403805599092845E-4 62-63 2.0096798656203302E-4 4.36585625979589E-4 0.0 0.7973751363377215 2.182928129897945E-4 64-65 2.0096798656203302E-4 5.058849316906349E-4 0.0 0.8136119636658197 2.2175777827534678E-4 66-67 2.148278477042422E-4 5.093498969761872E-4 0.0 0.8229812297979531 2.2522274356089907E-4 68-69 2.2522274356089907E-4 5.301396886895008E-4 0.0 0.831532764122696 2.2868770884645139E-4 70-71 2.3908260470310828E-4 5.336046539750532E-4 0.0 0.8401501327878647 2.3215267413200367E-4 72-73 2.841271534152881E-4 5.370696192606055E-4 0.0 0.8473815153388122 2.4947750055976514E-4 74-75 2.9105708398639266E-4 5.78649202687233E-4 0.0 0.8539372296590773 2.4947750055976514E-4 76-77 2.9105708398639266E-4 6.306236819705175E-4 0.0 0.8596890720330941 2.4947750055976514E-4 78-79 2.9452204927194495E-4 6.514134736838312E-4 0.0 0.8649870039547035 2.4947750055976514E-4 80-81 2.9798701455749723E-4 6.548784389693834E-4 0.0 0.8681920968438394 2.5294246584531743E-4 82-83 2.9798701455749723E-4 6.583434042549358E-4 0.0 0.8702294964317441 2.9105708398639266E-4 84-85 2.9798701455749723E-4 6.583434042549358E-4 0.0 0.8718060556366705 2.9105708398639266E-4 86-87 2.9798701455749723E-4 6.583434042549358E-4 0.0 0.8720243484496601 2.9452204927194495E-4 88-89 2.9798701455749723E-4 6.929930571104588E-4 0.0 0.8720693929983724 3.0838191041415415E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14460 0.0 43.507397 1 GTATCAA 24860 0.0 31.7453 1 TCAACGC 29595 0.0 25.64557 4 ATCAACG 29875 0.0 25.432903 3 CAACGCA 30320 0.0 25.018616 5 AACGCAG 31160 0.0 24.423817 6 TATCAAC 31955 0.0 24.140272 2 GTACATG 37040 0.0 21.686049 1 TACATGG 37825 0.0 20.85326 2 ACGCAGA 36955 0.0 20.515512 7 ACATGGG 37820 0.0 20.254154 3 CGCAGAG 38495 0.0 19.72702 8 CATGGGG 27805 0.0 17.567974 4 AGAGTAC 39760 0.0 16.70272 10-11 GCAGAGT 45620 0.0 16.564426 9 GAGTACT 25770 0.0 16.324121 12-13 GTGGTAT 8395 0.0 16.25906 1 CAGAGTA 43965 0.0 15.556804 10-11 GAGTACA 27495 0.0 14.893049 1 TGGTATC 8280 0.0 14.886346 2 >>END_MODULE