##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139571_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7770243 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.401904933989837 28.0 18.0 32.0 18.0 33.0 2 31.674851481478765 33.0 32.0 33.0 27.0 33.0 3 32.04666482116454 33.0 33.0 33.0 29.0 34.0 4 32.69908457174377 33.0 33.0 34.0 31.0 34.0 5 33.04955713740227 34.0 33.0 34.0 32.0 34.0 6 37.13481302965686 38.0 38.0 38.0 36.0 38.0 7 37.2099660203677 38.0 38.0 38.0 36.0 38.0 8 37.29984416188786 38.0 38.0 38.0 37.0 38.0 9 37.38185034882436 38.0 38.0 38.0 37.0 38.0 10-11 37.39951125080644 38.0 38.0 38.0 37.0 38.0 12-13 37.421295962043914 38.0 38.0 38.0 37.0 38.0 14-15 37.41986260918738 38.0 38.0 38.0 37.0 38.0 16-17 37.40994174828252 38.0 38.0 38.0 37.0 38.0 18-19 37.289603298120795 38.0 38.0 38.0 37.0 38.0 20-21 37.404817425692 38.0 38.0 38.0 37.0 38.0 22-23 37.424042929535716 38.0 38.0 38.0 37.0 38.0 24-25 37.43047969145677 38.0 38.0 38.0 37.0 38.0 26-27 37.402757128514125 38.0 38.0 38.0 37.0 38.0 28-29 37.381194918446894 38.0 38.0 38.0 37.0 38.0 30-31 37.38215084194292 38.0 38.0 38.0 37.0 38.0 32-33 37.36637248679635 38.0 38.0 38.0 37.0 38.0 34-35 37.346427643923334 38.0 38.0 38.0 37.0 38.0 36-37 37.321739293386116 38.0 38.0 38.0 37.0 38.0 38-39 37.28494720061867 38.0 38.0 38.0 37.0 38.0 40-41 37.28948285394705 38.0 38.0 38.0 37.0 38.0 42-43 37.26952027982922 38.0 38.0 38.0 37.0 38.0 44-45 37.23639459118032 38.0 38.0 38.0 37.0 38.0 46-47 37.19911120903946 38.0 38.0 38.0 37.0 38.0 48-49 37.16645520267181 38.0 38.0 38.0 37.0 38.0 50-51 37.13865007835171 38.0 38.0 38.0 37.0 38.0 52-53 37.120931561888156 38.0 38.0 38.0 36.0 38.0 54-55 37.11163425004001 38.0 38.0 38.0 36.0 38.0 56-57 37.10148058285266 38.0 38.0 38.0 36.0 38.0 58-59 37.096529843653194 38.0 38.0 38.0 36.0 38.0 60-61 37.090076539150644 38.0 38.0 38.0 36.0 38.0 62-63 37.08392193488989 38.0 38.0 38.0 36.0 38.0 64-65 37.090440955566464 38.0 38.0 38.0 36.0 38.0 66-67 37.08271543772595 38.0 38.0 38.0 36.0 38.0 68-69 37.08512746207829 38.0 38.0 38.0 36.0 38.0 70-71 37.080846970360824 38.0 38.0 38.0 36.0 38.0 72-73 37.05666385923786 38.0 38.0 38.0 36.0 38.0 74-75 37.06941245159283 38.0 38.0 38.0 36.0 38.0 76-77 37.055976078227445 38.0 38.0 38.0 36.0 38.0 78-79 37.04383523926181 38.0 38.0 38.0 36.0 38.0 80-81 37.02060639529445 38.0 38.0 38.0 36.0 38.0 82-83 36.983410014873556 38.0 38.0 38.0 36.0 38.0 84-85 37.00321945609763 38.0 38.0 38.0 36.0 38.0 86-87 36.97428295123439 38.0 38.0 38.0 36.0 38.0 88-89 36.958393264669894 38.0 38.0 38.0 36.0 38.0 90-91 36.970712126046095 38.0 38.0 38.0 36.0 38.0 92-93 36.941036308415356 38.0 38.0 38.0 35.5 38.0 94-95 36.84814516957479 38.0 38.0 38.0 35.0 38.0 96-97 36.797066140844855 38.0 38.0 38.0 35.0 38.0 98-99 36.84440201775742 38.0 38.0 38.0 35.0 38.0 100 35.313660049996486 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 7.0 19 25.0 20 103.0 21 200.0 22 580.0 23 1562.0 24 3473.0 25 6748.0 26 12277.0 27 20108.0 28 31437.0 29 45331.0 30 62124.0 31 82295.0 32 107589.0 33 143545.0 34 208075.0 35 362496.0 36 1070709.0 37 5611557.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.41044971180438 19.665704148506038 14.094153812178076 23.829692327511506 2 14.925788035200444 21.48813106617129 40.830666428321486 22.755414470306786 3 18.290702105455388 26.488386527937415 30.80094148921726 24.419969877389935 4 12.142387310152333 17.677117691171308 39.197783132393674 30.982711866282692 5 12.696680332642421 38.26272007186703 35.96399183773804 13.076607757752509 6 29.567219460967642 38.21808134132624 18.888937507560918 13.325761690145196 7 26.148680292237962 32.84037577717969 23.57818153177449 17.432762398807863 8 24.577828518361652 36.46752102862163 21.654895477528825 17.299754975487897 9 25.998131589964434 15.861820537658861 21.42007656646002 36.71997130591669 10-11 24.013451059381282 26.748294744450078 29.43850018590152 19.79975401026712 12-13 24.684390480734674 24.555436976387803 29.464608086555856 21.295564456321667 14-15 21.910576027030302 25.83953294639563 26.968770474745767 25.2811205518283 16-17 21.344628475583065 28.868453663546944 27.875087046827236 21.91183081404275 18-19 21.369775694273656 27.914146314343064 29.59343099051085 21.12264700087243 20-21 22.175829899382677 27.180139055133708 29.495416619396693 21.148614426086926 22-23 21.869882090969647 27.212775600879404 29.4175762007565 21.49976610739445 24-25 21.640010351583783 27.31668657413614 29.56951403227205 21.473789042008033 26-27 21.578955905788952 27.46266627650444 29.456407288172098 21.50197052953451 28-29 21.486918365487192 27.353485081646106 29.611278178298956 21.54831837456775 30-31 21.629004280760515 27.259904385857652 29.555421582937218 21.55566975044461 32-33 21.40753606752808 27.522178960747663 29.440225290204186 21.63005968152007 34-35 21.677967413539285 27.469704076787938 29.471703719402793 21.38062479026998 36-37 21.5378241815416 27.388755682498406 29.48614075516626 21.587279380793735 38-39 21.38699749812869 27.423263131538494 29.50429169177629 21.685447678556525 40-41 21.747154625974414 27.215230868177244 29.621430798694853 21.41618370715349 42-43 21.552246714143863 27.25228621915673 29.38448253771661 21.8109845289828 44-45 21.480328416043985 27.45422294264097 29.293245481070944 21.772203160244104 46-47 21.63879845205201 27.35477554119977 29.22053580811162 21.785890198636597 48-49 21.60494836360285 27.641764600500252 28.946921300497568 21.80636573539933 50-51 21.502320850665207 27.797399877311125 28.66754801060179 22.03273126142188 52-53 21.472117268401902 27.590288273159807 28.726371396585503 22.211223061852785 54-55 21.727751844095582 27.294743397998467 29.032735821482277 21.944768936423674 56-57 21.614321053406123 26.8917371530284 29.087302644026934 22.40663914953854 58-59 21.217409866716917 26.7062109360728 29.324627927784956 22.751751269425327 60-61 21.568148427087188 27.232606519006485 29.467780545058403 21.731464508847925 62-63 20.875571331177508 27.596760000360398 29.466930617058406 22.060738051403682 64-65 20.61003930394703 28.02933073403539 29.053422411773237 22.307207550244343 66-67 20.700277548359164 28.81671426843799 28.411918140316985 22.071090042885857 68-69 20.910859002584928 28.800080988828537 28.1009668634297 22.188093145156838 70-71 20.901435167934725 28.0414108525257 28.207188855860636 22.849965123678935 72-73 21.24985855677809 27.227709804653777 28.209542783928516 23.312888854639617 74-75 21.454444465415758 27.252970661432226 28.42648255736692 22.866102315785096 76-77 21.826788411502744 27.161192371783006 27.568586713961352 23.443432502752902 78-79 22.087557599321233 27.162549997300218 26.9673051522283 23.78258725115025 80-81 21.87798319394934 27.816488962907133 27.08398027098407 23.221547572159455 82-83 21.91135539543825 27.462790437164426 27.181187043311777 23.444667124085548 84-85 21.890708414926703 28.069767682089104 27.06314199697943 22.976381906004764 86-87 22.653626665044563 27.903870167166478 27.119036915809637 22.323466251979323 88-89 22.306364066405237 28.100010731558672 27.566878325722215 22.026746876313872 90-91 22.286618236942285 27.532979620340488 27.33471866190886 22.845683480808372 92-93 22.28918350934516 26.90730262424774 27.64516001785366 23.15835384855344 94-95 21.27556252428068 27.508706045407934 28.56182254717014 22.653908883141245 96-97 21.40271224031178 27.278802480660254 28.850161003534968 22.468324275493 98-99 22.567921587364832 29.144592264257835 29.23409281209729 19.053393336280045 100 29.05348002154054 40.373343390768284 30.573176587691176 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2564.0 1 2360.5 2 3014.0 3 4181.0 4 5237.0 5 7062.5 6 8754.5 7 10809.0 8 12847.0 9 13459.0 10 12722.5 11 12073.0 12 13244.0 13 16314.0 14 22097.0 15 28317.0 16 31982.0 17 33265.5 18 32401.5 19 30260.5 20 28115.5 21 26886.5 22 28245.0 23 33395.5 24 42000.0 25 52769.0 26 66307.5 27 82623.5 28 99286.5 29 117334.5 30 135552.5 31 153074.5 32 173705.0 33 194325.5 34 211308.0 35 231362.0 36 252666.5 37 267504.0 38 280563.0 39 290226.5 40 297022.5 41 303322.5 42 308052.5 43 314891.5 44 326552.5 45 339713.5 46 338201.5 47 331155.0 48 326360.5 49 318727.0 50 311836.5 51 301976.0 52 288954.0 53 272130.5 54 252057.5 55 232617.5 56 211949.5 57 189224.5 58 168039.0 59 146324.0 60 122405.0 61 98268.5 62 77386.5 63 60468.5 64 46134.0 65 34472.5 66 25325.0 67 19009.5 68 14378.0 69 10752.0 70 8084.5 71 5886.0 72 4299.5 73 3073.5 74 2074.5 75 1390.0 76 923.5 77 602.0 78 398.0 79 271.0 80 185.5 81 120.5 82 83.0 83 64.0 84 49.0 85 32.0 86 21.0 87 13.0 88 8.0 89 6.0 90 4.0 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.004349928309835356 6 2.960010388349502E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 6.434805192064136E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 3.8802091484467136E-5 34-35 1.2337044684321323E-4 36-37 1.3715765449438203E-4 38-39 1.5115038918267924E-4 40-41 9.262545870277383E-5 42-43 1.2678957648210842E-4 44-45 1.2806828870771345E-4 46-47 3.409635985898291E-5 48-49 2.5523747294482784E-4 50-51 3.835756264330473E-4 52-53 3.4984484381176946E-4 54-55 0.0018136364594427122 56-57 0.0028801054160627615 58-59 0.0016549749001317318 60-61 0.0032181215181074506 62-63 0.0017018618368495133 64-65 0.002638652514621388 66-67 5.633313984972659E-4 68-69 6.892303387040929E-4 70-71 3.154518927226225E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 8.403725741385088E-6 90-91 0.0 92-93 8.631626521259437E-6 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 109.0 20-21 394.0 22-23 738.0 24-25 890.0 26-27 2737.0 28-29 8045.0 30-31 19457.0 32-33 28583.0 34-35 40174.0 36-37 59487.0 38-39 36132.0 40-41 64116.0 42-43 71053.0 44-45 84202.0 46-47 85594.0 48-49 80669.0 50-51 40389.0 52-53 5817.0 54-55 5185.0 56-57 5207.0 58-59 42040.0 60-61 78321.0 62-63 75229.0 64-65 80007.0 66-67 86420.0 68-69 88656.0 70-71 94431.0 72-73 77223.0 74-75 75844.0 76-77 78956.0 78-79 81366.0 80-81 80729.0 82-83 74882.0 84-85 73587.0 86-87 74509.0 88-89 77997.0 90-91 79218.0 92-93 77205.0 94-95 85440.0 96-97 259289.0 98-99 1789263.0 100-101 3600653.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.84035802614287 #Duplication Level Percentage of deduplicated Percentage of total 1 89.45859745714789 75.89699436781021 2 7.317530043334656 12.416437374871379 3 1.8422107071507265 4.688814478627844 4 0.6726887227502388 2.2828460831311608 5 0.29486597032357104 1.2508267245988893 6 0.1441132481984442 0.7335971744079837 7 0.08502973815790649 0.5049767399730177 8 0.04989858856945941 0.3386731295385709 9 0.0355067685295176 0.2711166258956089 >10 0.09637390441242838 1.2793682951206469 >50 0.0020463015300823937 0.11997656045752637 >100 0.0010661021389521156 0.15681292356984416 >500 4.829850536244817E-5 0.033703273750393066 >1k 2.4149250769858033E-5 0.025856248246988615 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.286961038412827E-5 1.286961038412827E-5 3 0.0 0.0 0.0 2.573922076825654E-5 1.286961038412827E-5 4 0.0 0.0 0.0 2.573922076825654E-5 1.286961038412827E-5 5 1.286961038412827E-5 0.0 0.0 2.573922076825654E-5 1.286961038412827E-5 6 1.286961038412827E-5 0.0 0.0 2.573922076825654E-5 1.286961038412827E-5 7 1.286961038412827E-5 0.0 0.0 3.860883115238481E-5 1.286961038412827E-5 8 1.286961038412827E-5 0.0 0.0 3.860883115238481E-5 1.286961038412827E-5 9 1.286961038412827E-5 3.860883115238481E-5 0.0 5.147844153651308E-5 2.573922076825654E-5 10-11 5.147844153651308E-5 3.860883115238481E-5 0.0 6.434805192064136E-5 2.573922076825654E-5 12-13 7.721766230476962E-5 3.860883115238481E-5 0.0 7.721766230476962E-5 3.217402596032068E-5 14-15 8.365246749683376E-5 5.147844153651308E-5 0.0 1.0939168826509029E-4 5.147844153651308E-5 16-17 9.008727268889789E-5 5.147844153651308E-5 0.0 1.2226129864921856E-4 5.147844153651308E-5 18-19 1.0295688307302616E-4 5.791324672857721E-5 0.0 1.4156571422541098E-4 5.147844153651308E-5 20-21 1.1582649345715442E-4 6.434805192064134E-5 0.0 1.6730493499366751E-4 5.147844153651308E-5 22-23 1.286961038412827E-4 6.434805192064134E-5 0.0 2.252181817222447E-4 7.078285711270549E-5 24-25 1.6730493499366751E-4 7.078285711270549E-5 0.0 2.3165298691430885E-4 9.008727268889789E-5 26-27 1.8660935056985991E-4 7.721766230476962E-5 0.0 3.4104467517939913E-4 1.0295688307302616E-4 28-29 1.9304415576192405E-4 7.721766230476962E-5 0.0 9.201771424651713E-4 1.0295688307302616E-4 30-31 1.9304415576192405E-4 8.365246749683376E-5 0.0 0.002483834804136756 1.0295688307302616E-4 32-33 2.059137661460523E-4 9.008727268889789E-5 0.0 0.005263670647108462 1.0295688307302616E-4 34-35 2.3165298691430885E-4 1.2226129864921856E-4 0.0 0.009478468047910471 1.0295688307302616E-4 36-37 2.573922076825654E-4 1.5443532460953925E-4 0.0 0.019645460251371802 1.0295688307302616E-4 38-39 2.573922076825654E-4 1.6730493499366751E-4 0.0 0.24075180145588754 1.0295688307302616E-4 40-41 2.7026181806669364E-4 1.6730493499366751E-4 0.0 0.46771381538518164 1.0939168826509029E-4 42-43 2.7026181806669364E-4 1.6730493499366751E-4 0.0 0.49118154992063956 1.1582649345715442E-4 44-45 2.8956623364288607E-4 1.7373974018573165E-4 0.0 0.5228729654915554 1.1582649345715442E-4 46-47 3.4104467517939913E-4 1.8017454537779578E-4 0.0 0.5579297841779207 1.1582649345715442E-4 48-49 3.474794803714633E-4 1.8017454537779578E-4 0.0 0.5927292106566037 1.1582649345715442E-4 50-51 3.474794803714633E-4 2.3165298691430885E-4 0.0 0.6265955903824372 1.1582649345715442E-4 52-53 3.6034909075559156E-4 2.3165298691430885E-4 0.0 1.28425842023216 1.2226129864921856E-4 54-55 3.6678389594765567E-4 2.3165298691430885E-4 0.0 2.1730658873860187 1.286961038412827E-4 56-57 3.7321870113971983E-4 2.3165298691430885E-4 0.0 3.1279330646416077 1.286961038412827E-4 58-59 3.7321870113971983E-4 2.3165298691430885E-4 0.0 4.112870086559712 1.286961038412827E-4 60-61 3.7321870113971983E-4 2.3165298691430885E-4 0.0 4.370133598138437 1.286961038412827E-4 62-63 3.7321870113971983E-4 2.445225972984371E-4 0.0 4.3782864963167825 1.4156571422541098E-4 64-65 3.7321870113971983E-4 2.573922076825654E-4 0.0 4.386407220469167 1.4156571422541098E-4 66-67 3.7321870113971983E-4 2.573922076825654E-4 0.0 4.394045334232146 1.4156571422541098E-4 68-69 3.860883115238481E-4 2.573922076825654E-4 0.0 4.401670578384743 1.4156571422541098E-4 70-71 3.860883115238481E-4 2.6382701287462954E-4 0.0 4.407860860979509 1.6730493499366751E-4 72-73 3.860883115238481E-4 2.7026181806669364E-4 0.0 4.412307311367225 1.9304415576192405E-4 74-75 3.860883115238481E-4 2.766966232587578E-4 0.0 4.41596871552151 1.9304415576192405E-4 76-77 3.860883115238481E-4 2.8313142845082196E-4 0.0 4.41961725006541 1.9304415576192405E-4 78-79 3.860883115238481E-4 2.8313142845082196E-4 0.0 4.422056041233202 1.9304415576192405E-4 80-81 3.860883115238481E-4 2.8313142845082196E-4 0.0 4.423008392401627 1.9304415576192405E-4 82-83 3.860883115238481E-4 2.8313142845082196E-4 0.0 4.423729090583139 1.9304415576192405E-4 84-85 3.860883115238481E-4 2.8313142845082196E-4 0.0 4.4239929175960135 1.9304415576192405E-4 86-87 3.860883115238481E-4 2.8313142845082196E-4 0.0 4.424083004868702 1.9304415576192405E-4 88 3.860883115238481E-4 3.088706492190785E-4 0.0 4.424083004868702 1.9304415576192405E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10375 0.0 51.702763 1 ATCTCGT 12125 0.0 49.457882 94 TATCTCG 14630 0.0 40.303253 94 GTATCAA 18390 0.0 35.4161 1 TCAACGC 22505 0.0 28.640043 4 ATCAACG 22485 0.0 28.609161 3 CAACGCA 22740 0.0 28.325495 5 AACGCAG 23600 0.0 27.45278 6 TATCAAC 23965 0.0 27.141972 2 CTATCTC 17380 0.0 23.995068 92-93 GTACATG 27860 0.0 23.862818 1 TACATGG 27840 0.0 23.697905 2 ACGCAGA 27455 0.0 23.521175 7 GCCGTCT 8120 0.0 23.245945 90-91 CGCAGAG 28105 0.0 22.947132 8 ACATGGG 27985 0.0 22.895935 3 ATGCCGT 8125 0.0 22.755842 88-89 TGCCGTC 8015 0.0 22.74627 88-89 CCGTCTT 8165 0.0 22.653328 90-91 TATGCCG 7895 0.0 22.639072 86-87 >>END_MODULE