##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139570_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10336401 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14139002540633 33.0 31.0 34.0 30.0 34.0 2 32.268526927312514 34.0 31.0 34.0 30.0 34.0 3 32.321222541579026 34.0 31.0 34.0 30.0 34.0 4 35.94970473765482 37.0 35.0 37.0 35.0 37.0 5 35.81200081150102 37.0 35.0 37.0 35.0 37.0 6 35.83474789726134 37.0 35.0 37.0 35.0 37.0 7 35.74848702173997 37.0 35.0 37.0 33.0 37.0 8 35.714355509233826 37.0 35.0 37.0 33.0 37.0 9 37.344225422368964 39.0 37.0 39.0 34.0 39.0 10-11 37.24281488305262 39.0 37.0 39.0 33.0 39.0 12-13 37.20032373937505 39.0 37.0 39.0 33.0 39.0 14-15 38.393596668705094 40.0 38.0 41.0 33.0 41.0 16-17 38.407868125472305 40.0 38.0 41.0 33.0 41.0 18-19 38.39881202364343 40.0 38.0 41.0 33.5 41.0 20-21 38.365290356759935 40.0 38.0 41.0 34.0 41.0 22-23 38.2608247009932 40.0 38.0 41.0 33.0 41.0 24-25 38.16999061809655 40.0 38.0 41.0 33.0 41.0 26-27 37.99297161310482 40.0 37.0 41.0 33.0 41.0 28-29 37.855033563725314 40.0 37.0 41.0 33.0 41.0 30-31 37.70374481431614 40.0 37.0 41.0 32.0 41.0 32-33 37.907169794781225 40.0 37.0 41.0 33.0 41.0 34-35 37.89074854605046 40.0 37.0 41.0 33.0 41.0 36-37 37.80461694207424 40.0 37.0 41.0 33.0 41.0 38-39 37.69491711531313 40.0 37.0 41.0 33.0 41.0 40-41 37.63638980762504 40.0 37.0 41.0 32.5 41.0 42-43 37.52357659358704 40.0 36.5 41.0 32.0 41.0 44-45 37.56400687471208 39.5 36.5 41.0 32.5 41.0 46-47 37.70193040778351 40.0 37.0 41.0 32.5 41.0 48-49 37.62232299671136 40.0 37.0 41.0 32.0 41.0 50-51 37.49792658413983 40.0 36.0 41.0 32.0 41.0 52-53 37.33859862584394 39.0 36.0 41.0 31.0 41.0 54-55 37.22204953413957 39.0 36.0 41.0 31.0 41.0 56-57 37.042653731538174 39.0 35.0 40.5 31.0 41.0 58-59 36.883608239974436 39.0 35.0 40.0 31.0 41.0 60-61 36.64258777697619 38.0 35.0 40.0 31.0 41.0 62-63 36.369927883118066 38.0 35.0 40.0 30.0 41.0 64-65 36.13774448556012 37.5 34.5 40.0 30.0 41.0 66-67 35.8371948879832 37.0 34.0 40.0 29.5 41.0 68-69 35.50913511523305 36.5 34.0 39.0 29.0 41.0 70-71 35.2020150594862 36.0 34.0 39.0 29.0 40.5 72-73 34.894815829707326 36.0 34.0 39.0 29.0 40.0 74-75 34.505257598431115 35.0 33.0 38.0 29.0 40.0 76-77 33.447392347886385 34.5 31.5 36.5 27.5 39.0 78-79 33.79264122326569 35.0 33.0 37.0 28.0 39.0 80-81 33.674493037986004 35.0 33.0 36.0 28.5 38.5 82-83 33.45466419081476 35.0 33.0 36.0 28.0 37.5 84-85 33.24034514553334 35.0 32.5 35.5 28.0 37.0 86-87 33.036979488386166 34.5 32.0 35.0 28.0 36.5 88-89 32.811233132228914 34.0 32.0 35.0 27.0 36.0 90-91 32.672564912118006 34.0 32.0 35.0 27.0 36.0 92-93 32.58596033183431 34.0 32.0 35.0 27.0 36.0 94-95 32.53710281853249 34.0 32.0 35.0 27.0 35.0 96-97 32.47799427288542 34.0 32.0 35.0 27.0 35.0 98-99 32.612721839090156 34.0 32.0 35.0 28.5 35.0 100-101 31.67447616745571 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 13.0 20 86.0 21 435.0 22 2178.0 23 7060.0 24 18582.0 25 38829.0 26 68817.0 27 106349.0 28 151233.0 29 199179.0 30 250661.0 31 308631.0 32 382500.0 33 483578.0 34 641557.0 35 882512.0 36 1331938.0 37 2083986.0 38 2220818.0 39 1116608.0 40 40848.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.59773812954819 21.301089228252657 13.851591090554633 25.249581551644525 2 15.028786476987799 22.386280863022538 38.99808412642192 23.586848533567746 3 17.778905829988602 26.262361531832983 30.95056973892557 25.008162899252845 4 12.596919848890947 18.143883310746435 38.07620775405229 31.182989086310325 5 12.97202962617259 37.91713382636761 35.998990364247675 13.111846183212124 6 30.863479464467368 37.98743876132515 18.003810030202967 13.145271744004514 7 26.491890165638893 32.347525990913084 23.43205338105594 17.728530462392083 8 24.829928715033407 36.60335933174419 21.125486520888654 17.44122543233375 9 25.601464184680918 15.673811416565592 21.07836180117238 37.64636259758111 10-11 24.404698501925377 26.524062872560766 29.16723625563675 19.904002369877098 12-13 24.717534662209797 24.175237589950314 29.204604194438666 21.902623553401227 14-15 21.90613057678393 25.71873904659852 26.39025904664496 25.984871329972588 16-17 21.880760182522444 28.595703539961708 27.29260343705967 22.230932840456173 18-19 21.911935305141508 28.010581245832082 28.63211769744614 21.445365751580265 20-21 22.523594860421518 27.306326704914458 28.492945185714813 21.67713324894921 22-23 22.268058724027195 27.274488773454465 28.328227304968674 22.12922519754967 24-25 22.126312976575782 27.373699387796613 28.404471866842627 22.095515768784978 26-27 22.109467722753678 27.479394708284648 28.3308533637175 22.080284205244176 28-29 22.063513475222994 27.499810494648923 28.381939134998284 22.054736895129796 30-31 22.266248181041192 27.466681786965115 28.24367143481527 22.023398597178417 32-33 22.06574453106667 27.596140487560373 28.231090525522728 22.10702445585023 34-35 22.1955040949475 27.59733881785306 28.268892522632367 21.938264564567074 36-37 22.18105446380339 27.493746146670272 28.218634436993856 22.106564952532487 38-39 22.02281384137204 27.56839509200701 28.3011989405542 22.10759212606675 40-41 22.229416053609114 27.468499742533343 28.189781701301648 22.1123025025559 42-43 22.096825492536343 27.57473277780488 28.0377994075858 22.29064232207298 44-45 22.148667535231453 27.64961018228322 27.923198899804326 22.278523382681005 46-47 22.207825106056955 27.57479819969416 27.773145127687094 22.44423156656179 48-49 22.159835687408936 27.708740513507728 27.717140792177158 22.41428300690618 50-51 22.164039339624164 27.782824690476954 27.63069905314576 22.42243691675312 52-53 22.23888895934438 27.67449626954224 27.54810981917143 22.538504951941952 54-55 22.24354505008846 27.594311336285944 27.572979496235483 22.58916411739012 56-57 22.222502467219815 27.662734470685468 27.536438202312354 22.578324859782363 58-59 22.198805962807295 27.703221697898417 27.543261883951693 22.554710455342594 60-61 22.247356051868728 27.65904161604408 27.526094375145444 22.56750795694175 62-63 22.21370715126337 27.789222667166886 27.472347600706044 22.5247225808637 64-65 22.179896919206705 27.745552714847037 27.43827715647355 22.63627320947271 66-67 22.256076870018436 27.880701254359185 27.208649278788734 22.654572596833646 68-69 22.252456542652457 27.837937111915178 27.24050475299684 22.669101592435524 70-71 22.209963230852058 27.61907410761958 27.32658609204285 22.844376569485515 72-73 22.266064713619983 27.64786602510501 27.241737204219053 22.844332057055954 74-75 22.255608412426252 27.696951973783346 27.222189674548364 22.825249939242042 76-77 22.47561584490971 27.69207250188492 27.139407013659667 22.692904639545702 78-79 22.3773105889002 27.621978140276703 27.14281228794037 22.857898982882723 80-81 22.395498206712897 27.64131701660203 27.13610950962227 22.827075267062803 82-83 22.434726611953966 27.614038515888723 27.24731440013583 22.70392047202148 84-85 22.462213162476985 27.667178641335404 27.226259032165245 22.644349164022366 86-87 22.431665080236584 27.616684466141628 27.29429912830493 22.657351325316853 88-89 22.380139060281103 27.57854307937249 27.340297464721488 22.701020395624923 90-91 22.412570364312277 27.647773387584774 27.32202678461298 22.61762946348997 92-93 22.48753870205859 27.520330664548016 27.406571541127217 22.585559092266177 94-95 22.32450985731176 27.48696981317141 27.573040564730185 22.615479764786645 96-97 22.20293680946749 27.553456677699312 27.663258298198816 22.58034821463438 98-99 22.323175881345854 28.109806590216017 27.7900399833775 21.77697754506062 100-101 25.265970265591875 35.812342032276504 28.970481722361523 9.9512059797701 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2269.0 1 2034.0 2 2609.5 3 3664.0 4 4885.5 5 7438.5 6 9622.5 7 11400.5 8 12538.0 9 12431.5 10 11589.0 11 10728.5 12 11849.5 13 15746.5 14 24350.0 15 35393.0 16 43527.0 17 47402.0 18 48349.5 19 47890.0 20 46750.5 21 46411.5 22 48390.0 23 54291.0 24 64773.5 25 79595.5 26 97647.5 27 117298.0 28 138727.0 29 161411.5 30 183053.5 31 204470.0 32 226372.5 33 247502.0 34 268536.5 35 290555.0 36 315045.0 37 336978.0 38 354935.0 39 372039.0 40 387850.0 41 401530.5 42 411370.5 43 420674.5 44 431256.0 45 440907.5 46 448013.5 47 451919.5 48 455444.0 49 454722.0 50 449017.0 51 440122.0 52 423980.5 53 402449.0 54 379247.0 55 354179.5 56 326292.5 57 296420.0 58 265498.0 59 231495.5 60 195740.5 61 161519.0 62 130135.0 63 102494.5 64 77660.5 65 58578.5 66 44916.0 67 34634.5 68 26837.0 69 20102.0 70 14978.5 71 11218.0 72 8056.5 73 5699.5 74 3977.0 75 2775.0 76 1932.5 77 1329.0 78 915.5 79 618.0 80 448.5 81 320.0 82 234.0 83 163.0 84 116.5 85 90.5 86 68.5 87 54.5 88 39.0 89 27.0 90 21.0 91 16.5 92 12.0 93 5.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001199643860566168 3 0.0 4 2.4186368156575968E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0034538133727590485 18-19 0.0 20-21 0.002143017333575596 22-23 0.0 24-25 4.01659016272223E-4 26-27 0.003417859847510198 28-29 0.0 30-31 1.406612611999104E-4 32-33 8.464112794129136E-4 34-35 7.767689226771971E-4 36-37 0.010415446490717418 38-39 0.011869535109544202 40-41 0.025209862474421797 42-43 0.001939191205767882 44-45 0.0011640634022448656 46-47 0.0017990327407415986 48-49 0.0017061957147795539 50-51 6.882550025020716E-5 52-53 1.498291760107008E-4 54-55 0.006082854315314729 56-57 0.0035780109235469884 58-59 0.0036781205778770574 60-61 0.001559967770392496 62-63 4.1489012231870156E-4 64-65 7.081889150931582E-4 66-67 6.891715037161529E-4 68-69 5.929202007675234E-6 70-71 0.0 72-73 1.1002379081103305E-4 74-75 3.165113351087344E-4 76-77 0.0014877391383065343 78-79 0.002127359366487759 80-81 0.0114237716560185 82-83 0.010386484058339786 84-85 0.013405454905839342 86-87 0.006582368784742715 88-89 0.08846245449287196 90-91 4.013583399647048E-4 92-93 1.4674807369306717E-5 94-95 3.0882033044076645E-4 96-97 0.014659371843188832 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 327.0 20-21 1009.0 22-23 1943.0 24-25 3839.0 26-27 4887.0 28-29 9878.0 30-31 26956.0 32-33 39818.0 34-35 58092.0 36-37 86396.0 38-39 87358.0 40-41 90348.0 42-43 102922.0 44-45 119949.0 46-47 120351.0 48-49 111829.0 50-51 103228.0 52-53 93679.0 54-55 106452.0 56-57 111748.0 58-59 116227.0 60-61 114794.0 62-63 110903.0 64-65 120264.0 66-67 128597.0 68-69 127353.0 70-71 126583.0 72-73 123100.0 74-75 125217.0 76-77 125810.0 78-79 134323.0 80-81 135726.0 82-83 130223.0 84-85 132185.0 86-87 140661.0 88-89 148036.0 90-91 160373.0 92-93 168762.0 94-95 211442.0 96-97 268855.0 98-99 847499.0 100-101 5358459.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.1073139288618 #Duplication Level Percentage of deduplicated Percentage of total 1 91.02313422378135 79.28780727619845 2 6.411869231762561 11.170414120839027 3 1.4870906235733716 3.886094093648176 4 0.5110266544327552 1.7805663685475992 5 0.23559345933122475 1.0260956710775764 6 0.11737072940025499 0.6134309383156501 7 0.056818275563241434 0.3464501156468694 8 0.03910517711117092 0.27250775510932046 9 0.02653233364583406 0.2080044284537673 >10 0.08914201302887997 1.2307670368394943 >50 0.0018849455087763334 0.11448388176561448 >100 4.152542522089987E-4 0.05534488633959835 >500 1.7078608444005846E-5 0.008033427218880685 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.9023641787891162E-5 2 0.0 1.9349094525260775E-5 0.0 0.0 2.9023641787891162E-5 3 0.0 1.9349094525260775E-5 0.0 9.674547262630387E-6 2.9023641787891162E-5 4 0.0 4.837273631315194E-5 0.0 3.869818905052155E-5 2.9023641787891162E-5 5 0.0 4.837273631315194E-5 0.0 3.869818905052155E-5 2.9023641787891162E-5 6 0.0 4.837273631315194E-5 0.0 4.837273631315194E-5 3.869818905052155E-5 7 0.0 4.837273631315194E-5 0.0 5.8047283575782324E-5 3.869818905052155E-5 8 0.0 5.8047283575782324E-5 0.0 5.8047283575782324E-5 3.869818905052155E-5 9 9.674547262630387E-6 1.2576911441419505E-4 0.0 7.73963781010431E-5 3.869818905052155E-5 10-11 9.674547262630387E-6 1.451182089394558E-4 0.0 9.674547262630388E-5 4.837273631315194E-5 12-13 1.4511820893945581E-5 1.6446730346471658E-4 0.0 1.2576911441419505E-4 4.837273631315194E-5 14-15 1.9349094525260775E-5 1.7414185072734697E-4 0.0 1.547927562020862E-4 6.288455720709752E-5 16-17 2.9023641787891162E-5 1.7414185072734697E-4 0.0 1.8865367162129254E-4 7.73963781010431E-5 18-19 3.869818905052155E-5 1.9349094525260773E-4 0.0 2.612127760910205E-4 8.223365173235829E-5 20-21 3.869818905052155E-5 2.225145870404989E-4 0.0 5.659610148638777E-4 1.1125729352024946E-4 22-23 4.353546268183674E-5 2.467009551970749E-4 0.0 0.0011561083978843313 1.3544366167682543E-4 24-25 4.837273631315194E-5 2.8056187061628124E-4 0.0 0.002795944158900182 1.547927562020862E-4 26-27 5.8047283575782324E-5 2.902364178789116E-4 0.0 0.006868928556467575 1.547927562020862E-4 28-29 5.8047283575782324E-5 2.902364178789116E-4 0.0 0.03194051778757422 1.6446730346471658E-4 30-31 5.8047283575782324E-5 3.2409733329811797E-4 0.0 0.054462863814977766 1.6446730346471658E-4 32-33 5.8047283575782324E-5 3.3860915419206355E-4 0.0 0.08088888966285267 1.6446730346471658E-4 34-35 5.8047283575782324E-5 3.8214461687390033E-4 0.0 0.12015787700186942 1.6446730346471658E-4 36-37 6.288455720709752E-5 4.2568007955573706E-4 0.0 0.17495934997103924 1.6446730346471658E-4 38-39 6.772183083841271E-5 4.450291740809978E-4 0.0 0.2520800034750974 1.6446730346471658E-4 40-41 6.772183083841271E-5 4.7889008950020417E-4 0.0 0.3495946026087804 1.6446730346471658E-4 42-43 8.707092536367348E-5 4.934019103941498E-4 0.0 0.40884636731876023 1.6930457709603177E-4 44-45 8.707092536367348E-5 5.46611920338617E-4 0.0 0.4944564360457765 1.7897912435866216E-4 46-47 1.0642001988893426E-4 5.949846566517688E-4 0.0 0.5886575027420086 1.8865367162129254E-4 48-49 1.0642001988893426E-4 5.99821930283084E-4 0.0 0.6627693720473886 1.9349094525260776E-4 50-51 1.0642001988893426E-4 6.385201193336056E-4 0.0 0.7313619121394381 2.1284003977786853E-4 52-53 1.0642001988893426E-4 6.627064874901816E-4 0.0 0.7981936846296888 2.273518606718141E-4 54-55 1.0642001988893426E-4 6.772183083841271E-4 0.0 0.9321474660280691 2.467009551970749E-4 56-57 1.0642001988893426E-4 6.772183083841271E-4 0.0 1.0445898915879908 2.515382288283901E-4 58-59 1.0642001988893426E-4 6.868928556467575E-4 0.0 1.1343551783643069 2.515382288283901E-4 60-61 1.0642001988893426E-4 7.062419501720182E-4 0.0 1.1815089217223673 2.515382288283901E-4 62-63 1.1609456715156465E-4 7.062419501720182E-4 0.0 1.2099956261371827 2.612127760910205E-4 64-65 1.1609456715156465E-4 7.546146864851703E-4 0.0 1.231182884642343 2.6605004972233567E-4 66-67 1.2576911441419505E-4 7.642892337478007E-4 0.0 1.243256719626106 2.7088732335365086E-4 68-69 1.451182089394558E-4 7.691265073791159E-4 0.0 1.2542228189482973 2.7572459698496605E-4 70-71 1.451182089394558E-4 7.73963781010431E-4 0.0 1.264056996240761 2.8056187061628124E-4 72-73 1.451182089394558E-4 7.73963781010431E-4 0.0 1.2714628621703046 3.144227860354876E-4 74-75 1.451182089394558E-4 7.73963781010431E-4 0.0 1.2779641579307923 3.192600596668028E-4 76-77 1.451182089394558E-4 7.73963781010431E-4 0.0 1.2840010754226738 3.192600596668028E-4 78-79 1.451182089394558E-4 7.73963781010431E-4 0.0 1.2894284964370093 3.192600596668028E-4 80-81 1.49955482570771E-4 7.73963781010431E-4 0.0 1.2925533752028389 3.2409733329811797E-4 82-83 1.547927562020862E-4 7.788010546417462E-4 0.0 1.2942996309837436 3.3860915419206355E-4 84-85 1.547927562020862E-4 7.836383282730614E-4 0.0 1.296113608595487 3.3860915419206355E-4 86-87 1.547927562020862E-4 7.933128755356918E-4 0.0 1.296403845013366 3.3860915419206355E-4 88-89 1.596300298334014E-4 7.933128755356918E-4 0.0 1.2964957532123609 3.3860915419206355E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10200 0.0 42.855976 1 GTATCAA 16695 0.0 30.596268 1 TCAACGC 19780 0.0 24.954973 4 ATCAACG 20100 0.0 24.537317 3 CAACGCA 20320 0.0 24.251398 5 AACGCAG 20870 0.0 23.690733 6 TATCAAC 21555 0.0 23.298977 2 GTACATG 25655 0.0 21.154942 1 TACATGG 25835 0.0 20.468893 2 ACATGGG 25820 0.0 20.147697 3 ACGCAGA 24880 0.0 19.88886 7 CGCAGAG 25780 0.0 19.13102 8 CATGGGG 19225 0.0 17.776907 4 GTGGTAT 5775 0.0 16.301071 1 GCAGAGT 30975 0.0 15.856376 9 TGGTATC 5320 0.0 15.617974 2 AGAGTAC 27545 0.0 15.521185 10-11 CAGAGTA 30190 0.0 15.137524 10-11 ATGGGGG 11795 0.0 15.12943 5 GAGTACT 17780 0.0 15.124911 12-13 >>END_MODULE