##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139569_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10952427 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15587997071334 33.0 31.0 34.0 30.0 34.0 2 32.28293564522274 34.0 31.0 34.0 30.0 34.0 3 32.33615992144937 34.0 31.0 34.0 30.0 34.0 4 35.963978029709764 37.0 35.0 37.0 35.0 37.0 5 35.826912062504505 37.0 35.0 37.0 35.0 37.0 6 35.84787663957952 37.0 35.0 37.0 35.0 37.0 7 35.761809231871624 37.0 35.0 37.0 33.0 37.0 8 35.72726702492516 37.0 35.0 37.0 33.0 37.0 9 37.36006795571429 39.0 37.0 39.0 34.0 39.0 10-11 37.25887385508253 39.0 37.0 39.0 33.5 39.0 12-13 37.217967761848584 39.0 37.0 39.0 33.0 39.0 14-15 38.41778356523171 40.0 38.0 41.0 33.0 41.0 16-17 38.43325506757543 40.0 38.0 41.0 33.0 41.0 18-19 38.426406402891345 40.0 38.0 41.0 33.5 41.0 20-21 38.39106434175214 40.0 38.0 41.0 34.0 41.0 22-23 38.28778855652962 40.0 38.0 41.0 33.5 41.0 24-25 38.19785094781464 40.0 38.0 41.0 33.0 41.0 26-27 38.02634310091324 40.0 37.0 41.0 33.0 41.0 28-29 37.89016310400736 40.0 37.0 41.0 33.0 41.0 30-31 37.737189546571926 40.0 37.0 41.0 32.5 41.0 32-33 37.931640766032245 40.0 37.0 41.0 33.0 41.0 34-35 37.91660169709425 40.0 37.0 41.0 33.0 41.0 36-37 37.832946466991075 40.0 37.0 41.0 33.0 41.0 38-39 37.72284335702166 40.0 37.0 41.0 33.0 41.0 40-41 37.66796089638616 40.0 37.0 41.0 33.0 41.0 42-43 37.55378318044548 40.0 37.0 41.0 32.0 41.0 44-45 37.59503589142735 39.5 36.5 41.0 32.5 41.0 46-47 37.73513302466096 40.0 37.0 41.0 33.0 41.0 48-49 37.656280949498374 40.0 37.0 41.0 32.0 41.0 50-51 37.529882500721826 40.0 36.0 41.0 32.0 41.0 52-53 37.37218233912948 39.0 36.0 41.0 31.0 41.0 54-55 37.2605910999699 39.0 36.0 41.0 31.0 41.0 56-57 37.08424934235287 39.0 35.0 41.0 31.0 41.0 58-59 36.92734938845243 39.0 35.0 40.0 31.0 41.0 60-61 36.68574704900097 38.0 35.0 40.0 31.0 41.0 62-63 36.40994306118587 38.0 35.0 40.0 30.0 41.0 64-65 36.17789381603036 37.5 34.5 40.0 30.0 41.0 66-67 35.87636591624331 37.0 34.0 40.0 30.0 41.0 68-69 35.549826209157764 36.5 34.0 39.0 29.0 41.0 70-71 35.241565426723035 36.0 34.0 39.0 29.0 40.5 72-73 34.93257838793866 36.0 34.0 39.0 29.0 40.0 74-75 34.54302047651902 35.0 33.0 38.0 29.0 40.0 76-77 33.48678980725478 34.5 32.0 36.5 27.5 39.0 78-79 33.82959777317076 35.0 33.0 37.0 28.5 39.0 80-81 33.70889363839554 35.0 33.0 36.0 29.0 38.5 82-83 33.487246374181225 35.0 33.0 36.0 29.0 37.5 84-85 33.26987289557811 35.0 32.5 35.5 29.0 37.0 86-87 33.062623971529334 34.5 32.0 35.0 28.0 36.5 88-89 32.83517951568504 34.0 32.0 35.0 27.5 36.0 90-91 32.695432626526994 34.0 32.0 35.0 27.0 36.0 92-93 32.610067371008284 34.0 32.0 35.0 27.0 36.0 94-95 32.55798939529328 34.0 32.0 35.0 27.0 35.0 96-97 32.4964563542057 34.0 32.0 35.0 27.0 35.0 98-99 32.62527604026544 34.0 32.0 35.0 28.5 35.0 100-101 31.682232982938718 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 14.0 20 80.0 21 485.0 22 2292.0 23 7801.0 24 19627.0 25 41315.0 26 72216.0 27 111966.0 28 157987.0 29 207818.0 30 262032.0 31 323622.0 32 401722.0 33 508153.0 34 675819.0 35 934207.0 36 1418717.0 37 2231581.0 38 2374537.0 39 1157543.0 40 42890.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.80802611147283 21.137853737806243 13.793700702136613 25.26041944858432 2 15.08018008665408 22.385287158850808 38.885582120184445 23.648950634310673 3 17.778525252896003 26.196878554862774 30.987259718781967 25.03733647345926 4 12.601038513718887 18.118330960485952 38.02445549977571 31.25617502601945 5 12.986829311895892 37.951095223004 35.933149794105 13.128925670995114 6 30.917521751115075 37.942393955239325 18.046000215294747 13.094084078350853 7 26.588362561101754 32.36251654541957 23.37991387662296 17.669207016855715 8 24.934911686697387 36.48551138482822 21.13635635279742 17.44322057567697 9 25.698486737231846 15.62549560932933 20.984673077483194 37.69134457595563 10-11 24.41034758779949 26.509585501003567 29.147306802410096 19.932760108786848 12-13 24.769478034411915 24.1498665090395 29.190639663701933 21.890015792846647 14-15 21.96458830540482 25.669584467442697 26.34947943501472 26.01634779213776 16-17 21.896298087267553 28.58969520284984 27.257296793035497 22.256709916847107 18-19 21.953325961451284 27.995621427104695 28.610804710225413 21.440247901218605 20-21 22.563441291042047 27.2943773332321 28.45559638084767 21.68658499487818 22-23 22.340548763407337 27.207636643054578 28.33075000715709 22.121064586380996 24-25 22.15889564374084 27.31453113200718 28.401477973684468 22.125095250567508 26-27 22.13778358632257 27.454429613161423 28.3191915675281 22.088595232987903 28-29 22.111254963107175 27.46859502288752 28.3486209345305 22.071529079474807 30-31 22.284873935426848 27.37346128653489 28.28872600511339 22.05293877292487 32-33 22.078544476582344 27.551053038086735 28.2374552655804 22.132947219750516 34-35 22.24140683445441 27.541062593504073 28.269493591775202 21.948036980266316 36-37 22.234287940059033 27.460200458659877 28.18716446065323 22.118347140627865 38-39 22.11382138857208 27.605907889759155 28.239506633199724 22.04076408846904 40-41 22.287445769700405 27.472905893848043 28.130295298553147 22.10935303789841 42-43 22.17155548720203 27.582879097920564 27.982055050231462 22.26351036464594 44-45 22.24192201820914 27.635423527656926 27.85753705144237 22.265117402691555 46-47 22.31607405983355 27.57672724362975 27.675093424379693 22.43210527215701 48-49 22.25377633617495 27.67279082227146 27.65185200281719 22.421580838736404 50-51 22.26218084522985 27.793240369620015 27.557824616427506 22.38675416872263 52-53 22.374608209266896 27.682120357993174 27.466719857409327 22.476551575330607 54-55 22.328867805641632 27.593541865635657 27.521215837116692 22.556374491606018 56-57 22.361799545731927 27.678200282599374 27.479979138165916 22.48002103350278 58-59 22.286949463282543 27.693177473100544 27.51564580530001 22.5042272583169 60-61 22.359973147577918 27.67765268390796 27.52417215060588 22.438202017908242 62-63 22.340940530349535 27.767955156163087 27.480260803050605 22.410843510436774 64-65 22.26737069541983 27.725840409924828 27.48969841542051 22.51709047923483 66-67 22.335980002828844 27.769911419759364 27.334930329640866 22.559178247770927 68-69 22.276264897221886 27.77949809173829 27.36426056478811 22.57997644625171 70-71 22.230577849458562 27.604743036104594 27.470018807997015 22.694660306439832 72-73 22.305388898474536 27.602814189032237 27.351884832614754 22.739912079878476 74-75 22.26030841864733 27.62900189181467 27.35809790459377 22.752591784944233 76-77 22.38518870929582 27.58437421309911 27.327655023352847 22.702782054252218 78-79 22.306281512693747 27.552602161030148 27.29436615287284 22.84675017340326 80-81 22.34689576508927 27.601384327186306 27.26523517253761 22.786484735186814 82-83 22.36074993631153 27.55667042849108 27.373770689521493 22.708808945675894 84-85 22.38020909320155 27.57084326697221 27.348540054728975 22.70040758509726 86-87 22.338101916723975 27.584427051695453 27.361732476642587 22.715738554937985 88-89 22.32309566154143 27.491383089045325 27.435901252862415 22.74961999655083 90-91 22.322790398706267 27.500716596616392 27.48976039476283 22.686732609914515 92-93 22.31974632271096 27.363896867585012 27.607101552361662 22.709255257342363 94-95 22.148584213144996 27.414945812813375 27.67077558074813 22.765694393293504 96-97 22.091442914879178 27.474130720369832 27.726776657893048 22.70764970685794 98-99 22.257911281935915 28.068035952303923 27.803676302712788 21.87037646304737 100-101 25.26709599346181 35.81800646218114 28.94061541634756 9.974282128009495 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2351.0 1 2130.0 2 2692.0 3 3734.0 4 5013.5 5 7612.5 6 9817.5 7 11552.0 8 12808.0 9 12851.5 10 12114.0 11 11380.0 12 12582.5 13 16645.0 14 25565.0 15 37285.0 16 46055.5 17 50119.5 18 51152.0 19 50718.0 20 49204.0 21 48235.0 22 49713.5 23 55402.0 24 65737.0 25 80567.0 26 99416.0 27 120104.0 28 142577.5 29 166273.0 30 188712.5 31 211668.5 32 236262.0 33 260439.0 34 283469.5 35 306496.0 36 332173.5 37 354446.5 38 372966.0 39 390713.0 40 406419.5 41 420333.0 42 430291.5 43 440321.5 44 450114.5 45 458715.5 46 466909.5 47 471118.0 48 472667.5 49 472498.5 50 468292.5 51 458416.5 52 442087.0 53 421133.0 54 396810.5 55 370657.0 56 343065.5 57 312872.0 58 280793.5 59 244399.5 60 206093.5 61 170245.0 62 137670.0 63 108240.0 64 82454.5 65 62844.5 66 48121.5 67 37504.5 68 29314.5 69 21939.5 70 16261.0 71 12080.0 72 8758.0 73 6232.5 74 4348.0 75 2984.0 76 2050.5 77 1404.5 78 974.5 79 676.5 80 460.0 81 308.0 82 229.0 83 168.0 84 127.5 85 103.0 86 77.5 87 56.5 88 39.5 89 26.5 90 18.0 91 13.0 92 10.5 93 5.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013147770809154903 3 0.0 4 4.017374413908442E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0034010726572293063 18-19 0.0 20-21 0.002232484243637534 22-23 0.0 24-25 3.242561996643628E-4 26-27 0.003289471429912671 28-29 0.0 30-31 1.0983933434434338E-4 32-33 8.992108094681943E-4 34-35 7.505364263415263E-4 36-37 0.010654711410589329 38-39 0.012250923927733918 40-41 0.025424604529397057 42-43 0.0019532207424836794 44-45 0.0012737187622269218 46-47 0.0017340201926167068 48-49 0.0017391557393388651 50-51 5.941962769939036E-5 52-53 1.2504076954290947E-4 54-55 0.006198556590068437 56-57 0.0036325003020697337 58-59 0.004099022881851894 60-61 0.001663859731810926 62-63 5.137561928145E-4 64-65 8.687135703355551E-4 66-67 7.120984383137661E-4 68-69 4.96332543686639E-5 70-71 0.0 72-73 2.2717739021567426E-4 74-75 3.4584103958433136E-4 76-77 0.0017676605679645585 78-79 0.001914937182031966 80-81 0.011135175159450447 82-83 0.010053767350901216 84-85 0.013073109408721223 86-87 0.006612360795631358 88-89 0.08985371931399688 90-91 4.111874829224553E-4 92-93 4.072300712801942E-5 94-95 3.20369466784024E-4 96-97 0.015157179009814056 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 321.0 20-21 1042.0 22-23 1930.0 24-25 3921.0 26-27 5072.0 28-29 9675.0 30-31 24125.0 32-33 35770.0 34-35 52659.0 36-37 79138.0 38-39 82536.0 40-41 85943.0 42-43 100161.0 44-45 116959.0 46-47 118676.0 48-49 110717.0 50-51 102926.0 52-53 96372.0 54-55 109294.0 56-57 113069.0 58-59 116227.0 60-61 117848.0 62-63 113814.0 64-65 123286.0 66-67 131196.0 68-69 133403.0 70-71 130876.0 72-73 128367.0 74-75 132305.0 76-77 132268.0 78-79 140338.0 80-81 141698.0 82-83 136476.0 84-85 138807.0 86-87 148165.0 88-89 156462.0 90-91 170652.0 92-93 179688.0 94-95 225689.0 96-97 289807.0 98-99 916045.0 100-101 5798704.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.98177899441322 #Duplication Level Percentage of deduplicated Percentage of total 1 91.19142584857852 79.31992449346477 2 6.289488050190034 10.941417191392649 3 1.4003737075154834 3.654209890100965 4 0.5028554842458048 1.7495705838718894 5 0.2408827228312226 1.047620388043895 6 0.12116551530437311 0.6323515244369505 7 0.07218949474538658 0.43954194743630987 8 0.04527538248278948 0.3150506650404418 9 0.03097540338195593 0.24248661221088819 >10 0.10199841527346282 1.4123073746719208 >50 0.0026669054703492225 0.15329989728000756 >100 6.862664937915306E-4 0.08488221420412581 >500 1.6803486859235647E-5 0.007337217845234319 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.826079279049292E-5 0.0 2 0.0 0.0 0.0 1.826079279049292E-5 0.0 3 0.0 0.0 0.0 1.826079279049292E-5 0.0 4 0.0 9.13039639524646E-6 0.0 2.739118918573938E-5 0.0 5 0.0 9.13039639524646E-6 0.0 2.739118918573938E-5 0.0 6 9.13039639524646E-6 9.13039639524646E-6 0.0 2.739118918573938E-5 0.0 7 9.13039639524646E-6 9.13039639524646E-6 0.0 2.739118918573938E-5 9.13039639524646E-6 8 9.13039639524646E-6 9.13039639524646E-6 0.0 2.739118918573938E-5 1.826079279049292E-5 9 9.13039639524646E-6 2.739118918573938E-5 0.0 7.304317116197168E-5 1.826079279049292E-5 10-11 1.826079279049292E-5 2.739118918573938E-5 0.0 1.1869515313820398E-4 1.826079279049292E-5 12-13 2.739118918573938E-5 2.739118918573938E-5 0.0 1.2326035133582722E-4 1.826079279049292E-5 14-15 3.195638738336261E-5 3.652158558098584E-5 0.0 1.5521673871918984E-4 1.826079279049292E-5 16-17 4.56519819762323E-5 4.56519819762323E-5 0.0 2.0543391889304535E-4 1.826079279049292E-5 18-19 4.56519819762323E-5 5.934757656910199E-5 0.0 2.602162972645241E-4 1.826079279049292E-5 20-21 4.56519819762323E-5 7.760836935959492E-5 0.0 3.7891145040272814E-4 1.826079279049292E-5 22-23 4.56519819762323E-5 9.586916215008783E-5 0.0 8.080400809793117E-4 2.282599098811615E-5 24-25 4.56519819762323E-5 1.1869515313820398E-4 0.0 0.0015978193691681304 2.739118918573938E-5 26-27 4.56519819762323E-5 1.2782554953345043E-4 0.0 0.004346068684137314 2.739118918573938E-5 28-29 4.56519819762323E-5 1.2782554953345043E-4 0.0 0.02208186368190356 2.739118918573938E-5 30-31 5.478237837147876E-5 1.6434713511443629E-4 0.0 0.03308855653637317 2.739118918573938E-5 32-33 5.478237837147876E-5 1.826079279049292E-4 0.0 0.039466138418452826 2.739118918573938E-5 34-35 5.934757656910199E-5 2.1912951348591504E-4 0.0 0.048906968291137665 2.739118918573938E-5 36-37 6.391277476672522E-5 2.602162972645241E-4 0.0 0.06233321619034758 2.739118918573938E-5 38-39 6.391277476672522E-5 2.6478149546214734E-4 0.0 0.08456573141277271 2.739118918573938E-5 40-41 7.304317116197168E-5 2.921726846478867E-4 0.0 0.11869058794000636 4.56519819762323E-5 42-43 7.304317116197168E-5 3.1043347743837967E-4 0.0 0.13624377500986767 4.56519819762323E-5 44-45 7.304317116197168E-5 3.606506576122352E-4 0.0 0.1624617082588179 5.021718017385553E-5 46-47 7.304317116197168E-5 3.834766486003513E-4 0.0 0.19352788199364396 5.478237837147876E-5 48-49 7.304317116197168E-5 3.834766486003513E-4 0.0 0.21840364697249293 5.478237837147876E-5 50-51 7.304317116197168E-5 4.017374413908442E-4 0.0 0.24468092779801226 5.478237837147876E-5 52-53 7.304317116197168E-5 4.108678377860907E-4 0.0 0.27261994076746643 5.934757656910199E-5 54-55 7.304317116197168E-5 4.108678377860907E-4 0.0 0.35146547883861723 6.391277476672522E-5 56-57 7.304317116197168E-5 4.108678377860907E-4 0.0 0.41189500738055596 6.391277476672522E-5 58-59 7.304317116197168E-5 4.108678377860907E-4 0.0 0.4785971182460289 6.391277476672522E-5 60-61 7.760836935959492E-5 4.2912863057658365E-4 0.0 0.5155021804756151 6.391277476672522E-5 62-63 9.13039639524646E-5 4.382590269718301E-4 0.0 0.5340505807525583 7.304317116197168E-5 64-65 9.13039639524646E-5 4.930414053433089E-4 0.0 0.5529824576781018 7.304317116197168E-5 66-67 9.13039639524646E-5 5.021718017385553E-4 0.0 0.5634504571452519 7.304317116197168E-5 68-69 9.13039639524646E-5 5.021718017385553E-4 0.0 0.573032808162063 7.304317116197168E-5 70-71 9.13039639524646E-5 5.021718017385553E-4 0.0 0.5817432063231283 8.217356755721814E-5 72-73 9.13039639524646E-5 5.021718017385553E-4 0.0 0.589125131808685 8.217356755721814E-5 74-75 9.13039639524646E-5 5.113021981338017E-4 0.0 0.5955027136907646 8.217356755721814E-5 76-77 1.0043436034771106E-4 5.432585855171644E-4 0.0 0.6014557321404653 8.217356755721814E-5 78-79 1.0956475674295752E-4 5.569541801100341E-4 0.0 0.6070298391397633 8.217356755721814E-5 80-81 1.0956475674295752E-4 5.569541801100341E-4 0.0 0.6099606963826374 8.217356755721814E-5 82-83 1.0956475674295752E-4 5.569541801100341E-4 0.0 0.611795906058082 9.13039639524646E-5 84-85 1.1412995494058074E-4 5.569541801100341E-4 0.0 0.6132887258687048 9.13039639524646E-5 86-87 1.1869515313820398E-4 5.569541801100341E-4 0.0 0.6135443769677716 9.13039639524646E-5 88-89 1.1869515313820398E-4 5.75214972900527E-4 0.0 0.6135900289497479 1.0043436034771106E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10970 0.0 45.04266 1 GTATCAA 18115 0.0 31.310133 1 TCAACGC 21875 0.0 25.380772 4 CAACGCA 22285 0.0 24.950863 5 ATCAACG 22310 0.0 24.885899 3 AACGCAG 22775 0.0 24.377798 6 TATCAAC 23460 0.0 23.947857 2 GTACATG 27305 0.0 20.27324 1 ACGCAGA 27375 0.0 20.2362 7 TACATGG 27805 0.0 19.492985 2 CGCAGAG 28480 0.0 19.422064 8 ACATGGG 27905 0.0 18.919912 3 AGAGTAC 29805 0.0 16.302107 10-11 GAGTACT 19255 0.0 16.283232 12-13 GCAGAGT 34220 0.0 16.079803 9 GTGGTAT 6035 0.0 16.074118 1 CATGGGG 20760 0.0 16.04637 4 GAGTACA 20525 0.0 15.647068 1 CAGAGTA 33035 0.0 15.639141 10-11 TGGTATC 5815 0.0 14.978533 2 >>END_MODULE