##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139568_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5860165 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.55680275214094 25.0 18.0 31.0 18.0 33.0 2 31.47121966702303 32.0 31.0 33.0 27.0 33.0 3 31.917732009252298 33.0 31.0 33.0 29.0 34.0 4 32.62530167665928 33.0 33.0 34.0 31.0 34.0 5 33.0046689811635 34.0 33.0 34.0 32.0 34.0 6 37.097117060697094 38.0 38.0 38.0 36.0 38.0 7 37.18001165496193 38.0 38.0 38.0 36.0 38.0 8 37.26974667095551 38.0 38.0 38.0 36.0 38.0 9 37.357953061048626 38.0 38.0 38.0 37.0 38.0 10-11 37.37947856417012 38.0 38.0 38.0 37.0 38.0 12-13 37.40318378407434 38.0 38.0 38.0 37.0 38.0 14-15 37.402560593430394 38.0 38.0 38.0 37.0 38.0 16-17 37.39308722535969 38.0 38.0 38.0 37.0 38.0 18-19 37.2790365970924 38.0 38.0 38.0 37.0 38.0 20-21 37.389416802095425 38.0 38.0 38.0 37.0 38.0 22-23 37.40784289278503 38.0 38.0 38.0 37.0 38.0 24-25 37.41649070185622 38.0 38.0 38.0 37.0 38.0 26-27 37.38956857396103 38.0 38.0 38.0 37.0 38.0 28-29 37.36508691047855 38.0 38.0 38.0 37.0 38.0 30-31 37.36964865287656 38.0 38.0 38.0 37.0 38.0 32-33 37.355133246166034 38.0 38.0 38.0 37.0 38.0 34-35 37.338036864668666 38.0 38.0 38.0 37.0 38.0 36-37 37.31538683871834 38.0 38.0 38.0 37.0 38.0 38-39 37.28277904309302 38.0 38.0 38.0 37.0 38.0 40-41 37.286106179323916 38.0 38.0 38.0 37.0 38.0 42-43 37.2731420021437 38.0 38.0 38.0 37.0 38.0 44-45 37.244206209508306 38.0 38.0 38.0 37.0 38.0 46-47 37.215061857443985 38.0 38.0 38.0 37.0 38.0 48-49 37.18610392996471 38.0 38.0 38.0 37.0 38.0 50-51 37.16134476319665 38.0 38.0 38.0 37.0 38.0 52-53 37.14332259444372 38.0 38.0 38.0 36.5 38.0 54-55 37.13101340158297 38.0 38.0 38.0 36.0 38.0 56-57 37.11887485367933 38.0 38.0 38.0 36.0 38.0 58-59 37.10983653900084 38.0 38.0 38.0 36.0 38.0 60-61 37.10620122672337 38.0 38.0 38.0 36.0 38.0 62-63 37.10036489002283 38.0 38.0 38.0 36.0 38.0 64-65 37.10711179353223 38.0 38.0 38.0 36.0 38.0 66-67 37.0973181776738 38.0 38.0 38.0 36.0 38.0 68-69 37.09852330802529 38.0 38.0 38.0 36.0 38.0 70-71 37.09031033670075 38.0 38.0 38.0 36.0 38.0 72-73 37.063878184407194 38.0 38.0 38.0 36.0 38.0 74-75 37.083239736711995 38.0 38.0 38.0 36.0 38.0 76-77 37.072505432164945 38.0 38.0 38.0 36.0 38.0 78-79 37.062542479528894 38.0 38.0 38.0 36.0 38.0 80-81 37.03987033163635 38.0 38.0 38.0 36.0 38.0 82-83 37.03027766494455 38.0 38.0 38.0 36.0 38.0 84-85 37.01763311998798 38.0 38.0 38.0 36.0 38.0 86-87 36.98381575344551 38.0 38.0 38.0 36.0 38.0 88-89 36.96908579255463 38.0 38.0 38.0 36.0 38.0 90-91 36.9758812149633 38.0 38.0 38.0 36.0 38.0 92-93 36.94499152839499 38.0 38.0 38.0 35.5 38.0 94-95 36.8852232632903 38.0 38.0 38.0 35.0 38.0 96-97 36.89860057070588 38.0 38.0 38.0 35.0 38.0 98-99 36.92377598203305 38.0 38.0 38.0 35.0 38.0 100 35.414022668091754 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 20.0 20 55.0 21 158.0 22 418.0 23 1116.0 24 2597.0 25 4991.0 26 9098.0 27 14965.0 28 23027.0 29 33487.0 30 46154.0 31 61359.0 32 81001.0 33 109105.0 34 159521.0 35 279612.0 36 842602.0 37 4190875.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.57941542601616 19.180483825967357 14.085627281825683 24.154473466190797 2 15.402774495257384 21.225699276385562 39.89162421194625 23.4799020164108 3 18.560450089715903 25.700214925688954 30.550112496832426 25.18922248776272 4 12.574884836860395 17.145745896233297 38.4295322742619 31.849836992644402 5 13.205001901899527 37.75399403167034 35.66995925378644 13.371044812643698 6 30.729612474215685 37.43286863548932 18.374967065700684 13.46255182459431 7 26.75455383935435 32.36100007422999 23.199773385220382 17.68467270119527 8 25.048629176823518 36.08898384260512 21.255220629453266 17.6071663511181 9 25.960514763662797 15.710410884335168 21.07566937108426 37.25340498091777 10-11 24.530956039633697 26.306255881873636 29.04969399325787 20.1130940852348 12-13 24.998929211037574 24.020774159089378 29.079573698010208 21.90072293186284 14-15 22.197981336186267 25.367671055594265 26.48266554337605 25.95168206484341 16-17 21.933861930508783 28.344184848037557 27.350467094356556 22.371486127097103 18-19 21.987264863702645 27.521196075537123 28.877156189288183 21.61438287147205 20-21 22.625076822907445 26.822886114727158 28.869526013219808 21.682511049145585 22-23 22.396517369804965 26.790625452232014 28.70288425044848 22.109972927514544 24-25 22.222641299483875 26.89544758077316 28.81566717877529 22.066243940967677 26-27 22.164929185636094 27.020932212893182 28.77737627136349 22.03676233010723 28-29 22.09950840862018 26.94391179699786 28.866607814578355 22.0899719798036 30-31 22.32632832936835 26.933128272137196 28.70804608782862 22.032497310665832 32-33 22.134625654454297 27.034558544994265 28.72536742729195 22.10544837325949 34-35 22.2277492230395 27.140513723981407 28.762228596753804 21.869508456225294 36-37 22.259824881403027 26.964118838609718 28.640273234151124 22.135783045836128 38-39 22.10549654106991 27.07705049353992 28.773676107147388 22.043776858242776 40-41 22.272580103149732 26.956260476268167 28.708177010323478 22.06298241025862 42-43 22.173733767644784 27.039129723516876 28.540652392899936 22.246484115938404 44-45 22.190287854073148 27.184414618105073 28.427362300714854 22.197935227106925 46-47 22.31536065819736 27.097902318327215 28.2181422509916 22.368594772483828 48-49 22.27101474701209 27.18512639568116 28.203232942807098 22.34062591449965 50-51 22.235492415652597 27.321090370078515 28.124493485558112 22.318923728710775 52-53 22.338183123494343 27.28033625673376 28.06487595446658 22.316604665305317 54-55 22.292555387367553 27.23601894314902 28.029831996098288 22.44159367338514 56-57 22.333987428731632 27.3811093490745 27.953838508367383 22.331064713826486 58-59 22.277717903458292 27.392751326904257 28.066306349991056 22.263224419646395 60-61 22.34139883900246 27.441316393816038 27.997287455758556 22.219997311422944 62-63 22.2917155808149 27.56616155361622 27.947848174650954 22.194274690917926 64-65 22.2495611634434 27.477277513862852 27.92977312352344 22.34338819917031 66-67 22.322451009978543 27.48660228469193 27.841132740479296 22.34981396485023 68-69 22.248516847394917 27.452841714227223 27.942585985159024 22.356055453218836 70-71 22.286150668023662 27.214000674132606 28.001747341893495 22.498101315950237 72-73 22.380615180762423 27.199512844669805 27.928339003236335 22.491532971331434 74-75 22.25566660203028 27.325038912850935 27.939322156479445 22.479972328639334 76-77 22.40413375397105 27.27966681556122 27.804488301172537 22.511711129295193 78-79 22.308783246002246 27.25819749620697 27.808789741747425 22.62422951604336 80-81 22.378831066770726 27.34797549126376 27.753924406640067 22.51926903532545 82-83 22.44402774938093 27.337350473395173 27.820241845352108 22.39837993187179 84-85 22.468515908162132 27.33235631894491 27.72623334882712 22.47289442406584 86-87 22.33990677363094 27.395085946828974 27.7906717031711 22.47433557636899 88-89 22.441399253565223 27.35962909766871 27.6883375673313 22.51063408143477 90-91 22.44128312825743 27.42649122622387 27.682615892450542 22.44960975306816 92-93 22.550159664444536 27.36653969441355 27.668924888577045 22.414375752564872 94-95 22.40397218030017 27.397503103933722 27.71855261287876 22.479972102887345 96-97 22.505904766048005 27.527164340711497 27.73395350748239 22.232977385758108 98-99 23.596728677050056 29.389573230349665 27.959477974814344 19.05422011778594 100 30.03664987699902 40.594997527366836 29.36835259563414 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1421.0 1 1353.5 2 1833.0 3 2627.5 4 3255.5 5 4247.5 6 5200.0 7 6480.5 8 7842.0 9 8475.0 10 8147.0 11 7730.0 12 8529.5 13 10407.5 14 13648.0 15 17130.5 16 19399.5 17 20310.0 18 20085.5 19 19137.0 20 18350.0 21 18570.0 22 20347.0 23 24224.5 24 30147.5 25 37908.0 26 47827.5 27 59206.0 28 70938.0 29 83929.0 30 96573.5 31 107921.5 32 121393.0 33 136178.5 34 148453.5 35 160751.5 36 174386.0 37 186069.5 38 196770.5 39 205566.0 40 213358.5 41 220987.0 42 227032.0 43 235682.0 44 243508.5 45 247854.0 46 249799.0 47 250853.0 48 252351.5 49 249995.0 50 245529.5 51 240854.5 52 233225.5 53 223474.0 54 211290.0 55 197893.0 56 183744.5 57 167781.5 58 151165.0 59 131709.5 60 110539.5 61 90152.5 62 72517.5 63 56942.0 64 43312.0 65 33055.5 66 25059.0 67 19217.0 68 14545.0 69 10830.5 70 8202.0 71 6044.5 72 4311.0 73 2992.5 74 2008.5 75 1352.0 76 885.5 77 556.5 78 367.0 79 235.5 80 161.0 81 109.0 82 75.0 83 48.5 84 35.5 85 27.5 86 16.0 87 9.5 88 5.0 89 1.0 90 1.0 91 2.0 92 3.0 93 3.0 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0039930616288107925 6 2.2183675715615515E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 2.5596548902633287E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 6.853144145436055E-5 34-35 1.2893453400609654E-4 36-37 1.0367046132232191E-4 38-39 1.3052220978974002E-4 40-41 7.01376319518996E-5 42-43 1.2366483931255777E-4 44-45 1.1586915413378359E-4 46-47 6.304154374691378E-5 48-49 2.2748695794521406E-4 50-51 2.2971123735428153E-4 52-53 2.967376936155494E-4 54-55 0.0015820031323662022 56-57 0.0026010540227570473 58-59 0.0014913916586655734 60-61 0.0029668176425724996 62-63 0.0016309875922863076 64-65 0.0024869911611149855 66-67 4.99139334046304E-4 68-69 5.153580748324177E-4 70-71 2.8651576972563863E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.187313131754476E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 68.0 20-21 202.0 22-23 372.0 24-25 502.0 26-27 1627.0 28-29 4707.0 30-31 12002.0 32-33 17963.0 34-35 25813.0 36-37 39572.0 38-39 43922.0 40-41 41733.0 42-43 48020.0 44-45 56944.0 46-47 58107.0 48-49 54308.0 50-51 50133.0 52-53 49651.0 54-55 54147.0 56-57 56405.0 58-59 55970.0 60-61 55358.0 62-63 52666.0 64-65 56253.0 66-67 60155.0 68-69 61538.0 70-71 63172.0 72-73 55112.0 74-75 54892.0 76-77 57085.0 78-79 59098.0 80-81 57655.0 82-83 53955.0 84-85 52848.0 86-87 54280.0 88-89 56084.0 90-91 56882.0 92-93 55258.0 94-95 62198.0 96-97 175644.0 98-99 1292357.0 100-101 2695507.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.94885204554727 #Duplication Level Percentage of deduplicated Percentage of total 1 90.91750649600652 79.05172820671353 2 6.543016747135626 11.378155901564668 3 1.4554184648581037 3.7964089429591437 4 0.5191681968617542 1.8056431494274487 5 0.21483523698078485 0.9339838617206173 6 0.11259270912797222 0.5873884084425237 7 0.06376525085685922 0.388102075368018 8 0.046836485343503924 0.32579029075726124 9 0.02530096053608017 0.1979900526835678 >10 0.09888535389789577 1.3374227617876884 >50 0.0023343664175497782 0.1347792304426713 >100 3.098294798609484E-4 0.04185921528393287 >500 2.9902497439771143E-5 0.020747902848950475 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.706436593508886E-5 0.0 0.0 0.0 3 0.0 1.706436593508886E-5 0.0 0.0 0.0 4 0.0 5.1193097805266574E-5 0.0 0.0 0.0 5 0.0 5.1193097805266574E-5 0.0 0.0 0.0 6 6.825746374035544E-5 5.1193097805266574E-5 0.0 0.0 0.0 7 6.825746374035544E-5 5.1193097805266574E-5 0.0 0.0 0.0 8 6.825746374035544E-5 5.1193097805266574E-5 0.0 0.0 0.0 9 6.825746374035544E-5 8.532182967544429E-5 0.0 0.0 0.0 10-11 6.825746374035544E-5 8.532182967544429E-5 0.0 1.706436593508886E-5 0.0 12-13 6.825746374035544E-5 8.532182967544429E-5 0.0 1.706436593508886E-5 0.0 14-15 6.825746374035544E-5 1.5357929341579973E-4 0.0 1.706436593508886E-5 0.0 16-17 1.7064365935088858E-4 1.7064365935088858E-4 0.0 1.706436593508886E-5 8.53218296754443E-6 18-19 1.7064365935088858E-4 1.79175842318433E-4 0.0 1.706436593508886E-5 1.706436593508886E-5 20-21 1.7064365935088858E-4 1.8770802528597744E-4 0.0 2.559654890263329E-5 1.706436593508886E-5 22-23 1.7064365935088858E-4 2.133045741886107E-4 0.0 5.972528077281101E-5 1.706436593508886E-5 24-25 1.7064365935088858E-4 3.0715858683159946E-4 0.0 8.532182967544429E-5 1.706436593508886E-5 26-27 1.7064365935088858E-4 3.5835168463686605E-4 0.0 1.2798274451316643E-4 1.706436593508886E-5 28-29 1.7064365935088858E-4 3.5835168463686605E-4 0.0 3.156907697991439E-4 1.706436593508886E-5 30-31 1.7064365935088858E-4 4.607378802473992E-4 0.0 0.0011177159687483203 1.706436593508886E-5 32-33 1.8770802528597744E-4 4.607378802473992E-4 0.0 0.002781491647419484 1.706436593508886E-5 34-35 2.133045741886107E-4 5.204631610202102E-4 0.0 0.005110777597559113 1.706436593508886E-5 36-37 2.303689401236996E-4 5.887206247605656E-4 0.0 0.008600440431284785 1.706436593508886E-5 38-39 2.38901123091244E-4 6.484459055333766E-4 0.0 0.013881861688194786 1.706436593508886E-5 40-41 2.38901123091244E-4 6.996390033386432E-4 0.0 0.0190694289324618 1.706436593508886E-5 42-43 2.38901123091244E-4 7.678964670789986E-4 0.0 0.024649476593235856 1.706436593508886E-5 44-45 2.474333060587884E-4 9.470723093974317E-4 0.0 0.03133017585682314 1.706436593508886E-5 46-47 2.5596548902633286E-4 0.001075055053910598 0.0 0.03864225666000872 1.706436593508886E-5 48-49 2.5596548902633286E-4 0.0010835872368781425 0.0 0.04528882719172583 1.706436593508886E-5 50-51 2.98626403864055E-4 0.0011859734324886756 0.0 0.051781818430027146 1.706436593508886E-5 52-53 3.0715858683159946E-4 0.001211569981391309 0.0 0.05830040621723108 1.706436593508886E-5 54-55 3.0715858683159946E-4 0.0012286343473263978 0.0 0.06467394689398677 1.706436593508886E-5 56-57 3.0715858683159946E-4 0.0012456987132614867 0.0 0.07201162424607499 1.706436593508886E-5 58-59 3.0715858683159946E-4 0.0012456987132614867 0.0 0.07955407398938426 1.706436593508886E-5 60-61 3.156907697991439E-4 0.0012542308962290312 0.0 0.08635422381451717 1.706436593508886E-5 62-63 3.4128731870177717E-4 0.0012798274451316645 0.0 0.09248886336818161 1.706436593508886E-5 64-65 3.4128731870177717E-4 0.0014334067385474642 0.0 0.09902451552132065 1.706436593508886E-5 66-67 3.4128731870177717E-4 0.0014675354704176418 0.0 0.1053724596491737 1.706436593508886E-5 68-69 3.4128731870177717E-4 0.0015016642022878195 0.0 0.11206169109572853 1.706436593508886E-5 70-71 3.4128731870177717E-4 0.0015613894830606306 0.0 0.11803421917300963 1.706436593508886E-5 72-73 4.010125994745882E-4 0.001569921666028175 0.0 0.12242829340129502 1.706436593508886E-5 74-75 4.095447824421326E-4 0.0015955182149308082 0.0 0.12578997349050752 1.706436593508886E-5 76-77 4.266091483772215E-4 0.001629646946800986 0.0 0.12940761906874637 1.706436593508886E-5 78-79 4.436735143123103E-4 0.0016552434957036192 0.0 0.1318136946655939 1.706436593508886E-5 80-81 4.436735143123103E-4 0.0016552434957036192 0.0 0.132410947473322 1.706436593508886E-5 82-83 4.436735143123103E-4 0.0016552434957036192 0.0 0.13297407154917992 1.706436593508886E-5 84-85 4.436735143123103E-4 0.0016552434957036192 0.0 0.1332215048552387 1.706436593508886E-5 86-87 4.436735143123103E-4 0.001689372227573797 0.0 0.13334095541678434 1.706436593508886E-5 88 4.436735143123103E-4 0.0017576296913141523 0.0 0.13335801978271944 1.706436593508886E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6645 0.0 47.93538 1 GTATCAA 11735 0.0 34.267952 1 TCAACGC 14105 0.0 28.15443 4 ATCAACG 14265 0.0 27.809338 3 CAACGCA 14305 0.0 27.67313 5 AACGCAG 14830 0.0 26.664598 6 TATCAAC 15175 0.0 26.417156 2 GTACATG 17310 0.0 23.231337 1 TACATGG 17590 0.0 22.909065 2 ACGCAGA 17355 0.0 22.761047 7 ACATGGG 17640 0.0 22.488672 3 CGCAGAG 17995 0.0 22.021229 8 GTGGTAT 3320 0.0 19.893684 1 CATGGGG 12025 0.0 19.571291 4 TGGTATC 3275 0.0 18.762997 2 GCAGAGT 21455 0.0 18.489397 9 AGAGTAC 18980 0.0 17.629913 10-11 GAGTACT 12540 0.0 17.350351 12-13 CAGAGTA 20815 0.0 17.049685 10-11 ATGGGGG 7145 0.0 16.498447 5 >>END_MODULE