##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139567_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12812989 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1436560196844 33.0 31.0 34.0 30.0 34.0 2 32.277911344495806 34.0 31.0 34.0 30.0 34.0 3 32.332407996291884 34.0 31.0 34.0 30.0 34.0 4 35.95789054372871 37.0 35.0 37.0 35.0 37.0 5 35.820000079606714 37.0 35.0 37.0 35.0 37.0 6 35.83631867630574 37.0 35.0 37.0 35.0 37.0 7 35.749762682228166 37.0 35.0 37.0 33.0 37.0 8 35.71550408729766 37.0 35.0 37.0 33.0 37.0 9 37.34658244067797 39.0 37.0 39.0 34.0 39.0 10-11 37.24421877674288 39.0 37.0 39.0 33.0 39.0 12-13 37.20096766648282 39.0 37.0 39.0 33.0 39.0 14-15 38.403181334191416 40.0 38.0 41.0 33.0 41.0 16-17 38.413289514257755 40.0 38.0 41.0 33.0 41.0 18-19 38.39688495010805 40.0 38.0 41.0 33.5 41.0 20-21 38.35803051475567 40.0 38.0 41.0 34.0 41.0 22-23 38.250726381471175 40.0 38.0 41.0 33.0 41.0 24-25 38.159647914178024 40.0 37.5 41.0 33.0 41.0 26-27 37.984142526076326 40.0 37.0 41.0 33.0 41.0 28-29 37.84442354371819 40.0 37.0 41.0 33.0 41.0 30-31 37.69623444585032 40.0 37.0 41.0 32.0 41.0 32-33 37.9122172079132 40.0 37.0 41.0 33.0 41.0 34-35 37.90241909910205 40.0 37.0 41.0 33.0 41.0 36-37 37.817012332270664 40.0 37.0 41.0 33.0 41.0 38-39 37.706592335598025 40.0 37.0 41.0 33.0 41.0 40-41 37.653567510324166 40.0 37.0 41.0 32.5 41.0 42-43 37.54361441335067 40.0 37.0 41.0 32.0 41.0 44-45 37.58559623299984 39.5 36.5 41.0 32.5 41.0 46-47 37.722582167852046 40.0 37.0 41.0 32.5 41.0 48-49 37.64409016429832 40.0 37.0 41.0 32.0 41.0 50-51 37.51455808979192 40.0 36.0 41.0 32.0 41.0 52-53 37.357192369369976 39.0 36.0 41.0 31.0 41.0 54-55 37.24118920883981 39.0 36.0 41.0 31.0 41.0 56-57 37.065064875019225 39.0 35.0 40.5 31.0 41.0 58-59 36.90956506876647 39.0 35.0 40.0 31.0 41.0 60-61 36.667446706202206 38.0 35.0 40.0 31.0 41.0 62-63 36.3917704211157 38.0 35.0 40.0 30.0 41.0 64-65 36.15482983531301 37.5 34.5 40.0 30.0 41.0 66-67 35.85241312642684 37.0 34.0 40.0 30.0 41.0 68-69 35.520466444901814 36.5 34.0 39.0 29.0 41.0 70-71 35.21008573585135 36.0 34.0 39.0 29.0 40.5 72-73 34.89896708920088 35.5 34.0 38.5 29.0 40.0 74-75 34.50900214979667 35.0 33.0 37.5 29.0 40.0 76-77 33.45556277534705 34.5 31.5 36.5 27.5 39.0 78-79 33.79637249389663 35.0 33.0 36.5 28.5 39.0 80-81 33.67581593269149 35.0 33.0 36.0 29.0 38.5 82-83 33.45491708093192 35.0 33.0 36.0 29.0 37.0 84-85 33.2405570758696 35.0 32.5 35.0 29.0 37.0 86-87 33.03418464881278 34.5 32.0 35.0 28.0 36.5 88-89 32.812283013658366 34.0 32.0 35.0 27.0 36.0 90-91 32.67327987493263 34.0 32.0 35.0 27.0 36.0 92-93 32.583429465328265 34.0 32.0 35.0 27.0 35.5 94-95 32.532329736333686 34.0 32.0 35.0 27.0 35.0 96-97 32.47390453378354 34.0 32.0 35.0 27.0 35.0 98-99 32.60561869016579 34.0 32.0 35.0 28.5 35.0 100-101 31.656527434338948 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 13.0 20 97.0 21 574.0 22 2685.0 23 8770.0 24 22715.0 25 47372.0 26 83254.0 27 130267.0 28 185042.0 29 244193.0 30 307903.0 31 382763.0 32 474035.0 33 601089.0 34 796390.0 35 1101188.0 36 1663532.0 37 2594547.0 38 2739640.0 39 1374602.0 40 52313.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.69567132228085 21.12698293895359 13.61214779783234 25.56519794093322 2 15.178981452662002 22.190676599622442 38.78032935097273 23.85001259674283 3 18.043166976885722 25.867890778646576 30.658623058210694 25.430319186257012 4 12.703200509484148 17.95087942208514 37.61133258825439 31.734587480176323 5 13.167364773356164 37.72866737027559 35.826129250559724 13.277838605808528 6 31.37791658136911 37.578405788063975 17.82367096389453 13.22000666667239 7 26.890782470819257 31.972563154467704 23.094447361189495 18.04220701352354 8 24.971004033485084 36.56493422416893 20.938174535231397 17.525887207114593 9 25.61124496399708 15.530638479436764 20.786024244616147 38.07209231195001 10-11 24.620445705525853 26.382314072071704 28.915981274939046 20.08125894746339 12-13 24.88262496752319 23.920819724421836 28.94641523535219 22.250140072702788 14-15 22.07184834077357 25.526803308736156 25.99960477605967 26.401743574430604 16-17 22.201935294112825 28.426609343812988 26.914204479357366 22.45725088271682 18-19 22.216045764185075 27.905713491208022 28.139999183640914 21.738241560965985 20-21 22.809377222018856 27.200465028789168 27.92890476275961 22.06125298643237 22-23 22.532967652926825 27.171233918464395 27.803288180876056 22.49251024773272 24-25 22.42304240402284 27.2877485826092 27.89300168295028 22.396207330417678 26-27 22.430682727868255 27.380801412190532 27.826547677579978 22.361968182361235 28-29 22.382829521149482 27.35492448386135 27.886345348724056 22.37590064626511 30-31 22.537646089485 27.34732155662601 27.793331915427324 22.321700438461672 32-33 22.311448890528716 27.406594323214843 27.823892485537478 22.45806430071896 34-35 22.449922027997605 27.449646503683105 27.784986575722765 22.315444892596524 36-37 22.452472014862522 27.367620274241943 27.760466865900028 22.41944084499551 38-39 22.34247127283521 27.42409222902515 27.840004200598223 22.393432297541416 40-41 22.53271328531653 27.325218349859682 27.74978718561163 22.392281179212166 42-43 22.44467799224447 27.397847972739786 27.619630307761962 22.537843727253783 44-45 22.476284763587067 27.497346259705047 27.490075175615164 22.536293801092715 46-47 22.601157083652883 27.39777012575933 27.28931848191982 22.711754308667963 48-49 22.496472360642095 27.47044701163526 27.34654142784162 22.686539199881018 50-51 22.476200611946258 27.57109698017826 27.30446720766263 22.648235200212852 52-53 22.59939918166001 27.50690428100712 27.25795337193843 22.635743165394434 54-55 22.580823826285005 27.442813257545463 27.236491146424036 22.7398717697455 56-57 22.633028044630468 27.521470623151316 27.1521058056145 22.693395526603712 58-59 22.55595882533827 27.553027770160192 27.234596397190263 22.65641700731127 60-61 22.6294645778092 27.61589514777423 27.178525708734234 22.57611456568234 62-63 22.62450097155249 27.657796801208868 27.11618322951924 22.601518997719403 64-65 22.586498884714135 27.569863816377282 27.1301270574766 22.713510241431987 66-67 22.631096674641697 27.565572689878547 27.042318976326285 22.761011659153468 68-69 22.597013623484006 27.52076626429728 27.106929978197197 22.775290134021514 70-71 22.570859096422254 27.35369776755161 27.18035786174075 22.895085274285385 72-73 22.64304467287846 27.386645604235916 27.08712638206716 22.883183340818462 74-75 22.542193688862913 27.490795547602957 27.09321372833325 22.873797035200884 76-77 22.65303885121868 27.438570928345158 27.063178431879464 22.845211788556693 78-79 22.55504238457436 27.429490728369483 27.044849084624957 22.9706178024312 80-81 22.591492880631566 27.440495656641616 27.08671079810845 22.88130066461837 82-83 22.653195006324943 27.429658399108714 27.12744594833079 22.78970064623555 84-85 22.62842519703608 27.46064145649768 27.079783550564635 22.831149795901602 86-87 22.556487867133292 27.443445103848617 27.144121437812657 22.855945591205433 88-89 22.57807376792107 27.387632280336803 27.13145406583481 22.90283988590732 90-91 22.562878197761407 27.495700611171074 27.11664413635554 22.82477705471198 92-93 22.581110928697825 27.43039898553052 27.16434506859915 22.824145017172505 94-95 22.3671224720463 27.455753968569454 27.278110590708266 22.899012968675983 96-97 22.357188714027572 27.525563404990866 27.298434399665027 22.81881348131654 98-99 22.507449637613938 28.11503334663391 27.35822480522995 22.019292210522202 100-101 25.535107932870137 35.88319958505925 28.462906446917824 10.118786035152786 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2878.0 1 2567.5 2 3038.5 3 4035.0 4 5187.5 5 7773.5 6 9940.0 7 11395.0 8 12181.0 9 11917.0 10 11080.5 11 10202.0 12 11255.5 13 14843.5 14 22755.5 15 33229.0 16 41072.0 17 45134.5 18 46926.0 19 47357.5 20 46837.0 21 46764.0 22 48759.0 23 54816.5 24 65543.0 25 81248.5 26 101717.0 27 124640.0 28 151301.0 29 180608.5 30 208231.5 31 235753.0 32 265952.0 33 296730.5 34 325967.5 35 356016.5 36 389333.0 37 418466.5 38 442533.5 39 464405.0 40 484049.5 41 503608.0 42 518221.0 43 531808.0 44 546137.5 45 558641.5 46 567424.0 47 571835.0 48 578948.0 49 579371.5 50 571721.0 51 562345.5 52 545168.0 53 520497.5 54 490476.0 55 456563.0 56 421301.5 57 384455.0 58 345014.5 59 299584.5 60 251252.5 61 207552.0 62 168490.5 63 132921.5 64 101001.5 65 76600.5 66 58849.0 67 45501.0 68 35238.5 69 26489.0 70 19643.0 71 14369.5 72 10229.5 73 7115.0 74 4957.0 75 3449.0 76 2393.0 77 1630.5 78 1129.0 79 777.5 80 536.5 81 364.5 82 266.0 83 198.5 84 149.0 85 113.5 86 89.0 87 70.0 88 46.5 89 29.5 90 21.5 91 16.0 92 14.5 93 10.5 94 5.5 95 4.0 96 3.5 97 2.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0011941007675882653 3 0.0 4 2.263328252291483E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.003234998484740758 18-19 0.0 20-21 0.0021619702870355074 22-23 0.0 24-25 3.279224310420118E-4 26-27 0.0034094437295330857 28-29 0.0 30-31 1.487038134271169E-4 32-33 8.709983559709861E-4 34-35 8.389733612959609E-4 36-37 0.010077969720674585 38-39 0.01163900156305438 40-41 0.02470301484360687 42-43 0.0019592916112076034 44-45 0.0013063132971437993 46-47 0.001954270242643025 48-49 0.00197373044733822 50-51 3.831314216551158E-5 52-53 9.467932328384043E-5 54-55 0.0063829332382192095 56-57 0.0038114233032449994 58-59 0.0037743625262684896 60-61 0.0017320543638361559 62-63 4.08995661980618E-4 64-65 6.987811905060606E-4 66-67 7.565785927222057E-4 68-69 0.0 70-71 9.758205809440488E-6 72-73 1.1397406247661674E-4 74-75 2.566465932127343E-4 76-77 0.0014368150361415226 78-79 0.0020018935312944314 80-81 0.010866346322048758 82-83 0.00970942995247067 84-85 0.012601174738757303 86-87 0.006613092426121313 88-89 0.07951875767496178 90-91 4.075233467214456E-4 92-93 3.5754315650182394E-5 94-95 2.323888967031354E-4 96-97 0.014199875010725841 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 385.0 20-21 1138.0 22-23 2347.0 24-25 4864.0 26-27 7340.0 28-29 13287.0 30-31 29781.0 32-33 45028.0 34-35 66843.0 36-37 101508.0 38-39 105397.0 40-41 105711.0 42-43 122877.0 44-45 144251.0 46-47 146322.0 48-49 138112.0 50-51 127932.0 52-53 130347.0 54-55 146633.0 56-57 153934.0 58-59 153632.0 60-61 149438.0 62-63 145287.0 64-65 154624.0 66-67 166028.0 68-69 161970.0 70-71 159751.0 72-73 153581.0 74-75 156871.0 76-77 160077.0 78-79 168548.0 80-81 169110.0 82-83 161321.0 84-85 164182.0 86-87 173910.0 88-89 184166.0 90-91 196239.0 92-93 206577.0 94-95 258463.0 96-97 335828.0 98-99 1051742.0 100-101 6587607.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.92471840728311 #Duplication Level Percentage of deduplicated Percentage of total 1 90.5261266880201 77.78431944170164 2 6.6429327682528765 11.415842550212842 3 1.5818136083139638 4.077506666015572 4 0.566240382260504 1.946161815862646 5 0.24805760696763368 1.0657140013739217 6 0.1490741379623459 0.7685491995733826 7 0.0821874344328639 0.4943352512182612 8 0.048759446221360185 0.3351713349012351 9 0.03441082661739699 0.2661066528535512 >10 0.11639587717125865 1.5540866191912779 >50 0.0032464153806687525 0.18657053552754235 >100 7.396393316465728E-4 0.09711170965942936 >500 1.5169067406083035E-5 0.008524221908711828 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 7.804580180315459E-6 0.0 0.0 0.0 0.0 3 7.804580180315459E-6 0.0 0.0 0.0 0.0 4 7.804580180315459E-6 3.1218320721261836E-5 0.0 1.5609160360630918E-5 0.0 5 7.804580180315459E-6 3.90229009015773E-5 0.0 1.5609160360630918E-5 0.0 6 1.0145954234410098E-4 3.90229009015773E-5 0.0 1.5609160360630918E-5 0.0 7 1.0145954234410098E-4 4.682748108189276E-5 0.0 2.341374054094638E-5 0.0 8 1.0926412252441644E-4 5.463206126220822E-5 0.0 2.341374054094638E-5 7.804580180315459E-6 9 1.0926412252441644E-4 1.170687027047319E-4 0.0 3.90229009015773E-5 1.5609160360630918E-5 10-11 1.170687027047319E-4 1.2487328288504735E-4 0.0 5.463206126220822E-5 1.5609160360630918E-5 12-13 1.3267786306536282E-4 1.3658015315552054E-4 0.0 5.463206126220822E-5 1.5609160360630918E-5 14-15 1.4438473333583602E-4 1.4828702342599374E-4 0.0 5.853435135236595E-5 2.7316030631104106E-5 16-17 3.0047633694214523E-4 1.4828702342599374E-4 0.0 6.633893153268141E-5 3.1218320721261836E-5 18-19 3.0437862703230293E-4 1.6389618378662466E-4 0.0 7.024122162283913E-5 3.90229009015773E-5 20-21 3.0437862703230293E-4 1.9511450450788648E-4 0.0 7.80458018031546E-5 5.853435135236595E-5 22-23 3.082809171224606E-4 2.1852824504883285E-4 0.0 1.053618324342587E-4 6.633893153268141E-5 24-25 3.277923675732493E-4 2.380396954996215E-4 0.0 1.560916036063092E-4 7.80458018031546E-5 26-27 3.394992378437225E-4 2.497465657700947E-4 0.0 2.6925801622088334E-4 8.194809189331233E-5 28-29 3.434015279338802E-4 2.497465657700947E-4 0.0 0.0011745893171374766 8.585038198347006E-5 30-31 3.5120610811419567E-4 2.731603063110411E-4 0.0 0.003793025967633313 8.975267207362778E-5 32-33 3.590106882945111E-4 2.8486717658151423E-4 0.0 0.009217209192952557 1.0145954234410098E-4 34-35 3.980335891960884E-4 3.1608549730277613E-4 0.0 0.017267633648947955 1.0926412252441644E-4 36-37 4.1364274955671935E-4 3.551083982043534E-4 0.0 0.028233068802291178 1.0926412252441644E-4 38-39 4.1364274955671935E-4 4.097404594665616E-4 0.0 0.04125501083314752 1.0926412252441644E-4 40-41 4.292519099173503E-4 4.3705649009766575E-4 0.0 0.0527043299576703 1.0926412252441644E-4 42-43 4.7607939099924304E-4 4.6437252072876984E-4 0.0 0.06249127350378588 1.0926412252441644E-4 44-45 4.994931315401895E-4 5.112000018106626E-4 0.0 0.07530249186977371 1.0926412252441644E-4 46-47 5.151022919008204E-4 5.385160324417667E-4 0.0 0.08889807054388324 1.0926412252441644E-4 48-49 5.190045819909781E-4 5.541251928023977E-4 0.0 0.09966448890262841 1.0926412252441644E-4 50-51 5.463206126220822E-4 5.931480937039749E-4 0.0 0.10950996680009636 1.0926412252441644E-4 52-53 5.580274828925554E-4 6.048549639744482E-4 0.0 0.11813012560925479 1.2097099279488962E-4 54-55 5.697343531630285E-4 6.126595441547636E-4 0.0 0.1273863577031089 1.3658015315552054E-4 56-57 5.892458036138172E-4 6.165618342449213E-4 0.0 0.1366855149879548 1.4048244324567827E-4 58-59 6.126595441547636E-4 6.243664144252368E-4 0.0 0.14507153639170375 1.4048244324567827E-4 60-61 6.3607328469571E-4 6.3607328469571E-4 0.0 0.15357072420806728 1.4048244324567827E-4 62-63 6.711938955071295E-4 6.477801549661832E-4 0.0 0.1617109013361363 1.4828702342599374E-4 64-65 6.711938955071295E-4 6.946076360480759E-4 0.0 0.1705573929705239 1.4828702342599374E-4 66-67 6.907053459579181E-4 7.024122162283913E-4 0.0 0.1799658143778942 1.5218931351615146E-4 68-69 6.946076360480759E-4 7.024122162283913E-4 0.0 0.18902302967715026 1.6389618378662466E-4 70-71 7.2192366667918E-4 7.141190864988645E-4 0.0 0.19783830299081656 1.717007639669401E-4 72-73 7.882625982118614E-4 7.258259567693377E-4 0.0 0.20504193049724775 1.8730992432757103E-4 74-75 7.921648883020191E-4 7.297282468594955E-4 0.0 0.211184135099156 1.8730992432757103E-4 76-77 8.038717585724924E-4 7.453374072201263E-4 0.0 0.21764242519836707 1.8730992432757103E-4 78-79 8.116763387528078E-4 7.492396973102841E-4 0.0 0.22323050460747293 1.8730992432757103E-4 80-81 8.116763387528078E-4 7.492396973102841E-4 0.0 0.22620795194626328 1.8730992432757103E-4 82-83 8.116763387528078E-4 7.570442774905996E-4 0.0 0.22805763744899804 1.8730992432757103E-4 84-85 8.389923693839119E-4 7.64848857670915E-4 0.0 0.2295561168436186 1.8730992432757103E-4 86-87 8.546015297445429E-4 7.882625982118614E-4 0.0 0.22984098402020015 1.9121221441772876E-4 88-89 8.741129801953315E-4 7.882625982118614E-4 0.0 0.22991512753191312 2.0291908468820195E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11610 0.0 39.274933 1 GTATCAA 18770 0.0 28.890297 1 TCAACGC 21025 0.0 24.76054 4 ATCAACG 21440 0.0 24.281265 3 CAACGCA 21400 0.0 24.269321 5 AACGCAG 22330 0.0 23.313494 6 TATCAAC 23285 0.0 22.656157 2 GTACATG 30985 0.0 21.61898 1 TACATGG 31765 0.0 20.521648 2 ACATGGG 31740 0.0 19.983545 3 ACGCAGA 26945 0.0 19.305302 7 CGCAGAG 28200 0.0 18.402641 8 CATGGGG 24225 0.0 17.38766 4 GTGGTAT 7125 0.0 15.095366 1 GAGTACT 18025 0.0 15.077221 12-13 GCAGAGT 34525 0.0 14.900974 9 GAGTACA 23205 0.0 14.821331 1 AGAGTAC 30010 0.0 14.793312 10-11 ATGGGGG 14895 0.0 14.661162 5 CAGAGTA 33205 0.0 14.4168215 10-11 >>END_MODULE