##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139566_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20149565 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.64894358761591 31.0 31.0 34.0 30.0 34.0 2 31.867216240152082 31.0 31.0 34.0 30.0 34.0 3 31.883462049925146 31.0 31.0 34.0 30.0 34.0 4 35.63250323270006 37.0 35.0 37.0 33.0 37.0 5 35.45259314531108 37.0 35.0 37.0 33.0 37.0 6 35.44086117988155 37.0 35.0 37.0 33.0 37.0 7 35.298742925715764 37.0 35.0 37.0 32.0 37.0 8 35.28016446012606 37.0 35.0 37.0 32.0 37.0 9 36.80724720359968 39.0 37.0 39.0 32.0 39.0 10-11 36.72712770722346 39.0 35.0 39.0 32.0 39.0 12-13 36.654214148047366 39.0 35.0 39.0 32.0 39.0 14-15 37.72005748014908 39.0 37.0 41.0 32.0 41.0 16-17 37.75594088507618 39.0 37.0 41.0 32.0 41.0 18-19 37.78385751751961 39.5 37.0 41.0 32.0 41.0 20-21 37.75881929578273 40.0 37.0 41.0 32.0 41.0 22-23 37.686236159316564 39.0 37.0 41.0 32.0 41.0 24-25 37.58829594863049 39.0 36.0 41.0 32.0 41.0 26-27 37.41181287576973 39.0 36.0 41.0 32.0 41.0 28-29 37.2644860796332 39.0 36.0 40.5 31.0 41.0 30-31 37.121579082095046 39.0 36.0 40.0 31.0 41.0 32-33 37.35191861815119 39.0 36.0 40.5 31.0 41.0 34-35 37.35523245715528 39.0 36.0 41.0 31.0 41.0 36-37 37.24089975554891 39.0 36.0 41.0 31.0 41.0 38-39 37.12888762720871 39.0 36.0 41.0 31.0 41.0 40-41 37.10681593014511 39.0 36.0 40.5 31.0 41.0 42-43 37.03347419628323 39.0 35.5 40.0 31.0 41.0 44-45 37.007798966258235 39.0 35.5 40.0 31.0 41.0 46-47 37.017571953951354 39.0 35.5 40.0 31.0 41.0 48-49 36.93558414390051 39.0 35.0 40.0 30.0 41.0 50-51 36.84828652806854 39.0 35.0 40.0 30.0 41.0 52-53 36.71831085935429 39.0 35.0 40.0 30.0 41.0 54-55 36.60201757909542 38.5 35.0 40.0 30.0 41.0 56-57 36.42173491982919 38.0 35.0 40.0 30.0 41.0 58-59 36.26604150729041 38.0 34.5 40.0 29.0 41.0 60-61 36.098253002239176 38.0 34.0 40.0 29.0 41.0 62-63 35.864678731184895 37.5 34.0 40.0 29.0 41.0 64-65 35.64459235338025 37.0 34.0 40.0 29.0 41.0 66-67 35.38861253306433 37.0 34.0 39.5 28.5 41.0 68-69 35.10972422829158 36.0 34.0 39.0 28.0 40.5 70-71 34.82582474974925 36.0 33.0 39.0 28.0 40.0 72-73 34.521572679850564 35.0 33.0 38.5 28.0 40.0 74-75 34.20067858096509 35.0 33.0 37.5 28.0 39.5 76-77 33.15765171453104 34.5 31.5 36.0 26.5 39.0 78-79 33.53018143908106 35.0 32.0 36.0 27.0 39.0 80-81 33.46451188750912 35.0 32.0 36.0 28.0 38.5 82-83 33.28636836735067 35.0 32.0 36.0 28.0 37.0 84-85 33.064320534628095 35.0 32.0 35.0 27.0 37.0 86-87 32.905770070091634 34.0 32.0 35.0 27.0 36.5 88-89 32.72750782009186 34.0 32.0 35.0 27.0 36.0 90-91 32.6460688870323 34.0 32.0 35.0 27.0 36.0 92-93 32.61512322872373 34.0 32.0 35.0 27.0 36.0 94-95 32.61268318896702 34.0 32.0 35.0 27.0 35.0 96-97 32.531090030252415 34.0 32.0 35.0 27.0 35.0 98-99 32.67623893066852 34.0 32.0 35.0 28.5 35.0 100-101 32.2103998276298 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 11.0 19 47.0 20 254.0 21 1365.0 22 6120.0 23 20327.0 24 51554.0 25 104997.0 26 182681.0 27 278666.0 28 387911.0 29 502188.0 30 621683.0 31 753425.0 32 914477.0 33 1124326.0 34 1426173.0 35 1851036.0 36 2574576.0 37 3702244.0 38 3815254.0 39 1773268.0 40 56980.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.26850356322829 22.044729005315997 14.492228492277626 25.19453893917809 2 14.708252944161899 22.82951222347192 39.34271113529114 23.11952369707504 3 17.283301153151445 26.957758145151022 31.32477053474852 24.434170166949013 4 12.400734209398564 18.584301943987377 38.35313070034018 30.661833146273874 5 12.735029267381206 38.20463617949073 36.12510245258396 12.935232100544106 6 30.300197547688995 38.5436956083171 18.162466534637346 12.993640309356556 7 25.973215798951493 32.67027352699674 23.8414030278073 17.51510764624447 8 24.38721629970672 37.07909823363432 21.322018614297626 17.21166685236133 9 25.542223864386155 15.776107325393873 21.19905814343883 37.48261066678115 10-11 24.12093759840473 26.742363917037416 29.461956126596284 19.674742357961573 12-13 24.56558033803668 24.478158299796945 29.394520124600348 21.561741237566025 14-15 21.793130521676275 25.9060232813959 26.64302926638863 25.657816930539195 16-17 21.621891092934263 28.813495477445787 27.50369548920783 22.060917940412114 18-19 21.708708030742827 28.19870397654411 28.89391294991668 21.19867504279639 20-21 22.3738359799993 27.493201228836263 28.65525085894757 21.47771193221687 22-23 22.0918672474017 27.415536488935693 28.548578382551266 21.94401788111134 24-25 21.957051966878762 27.544743679042345 28.582399015522874 21.91580533855602 26-27 21.93538007500109 27.618520861594693 28.539366082263136 21.90673298114108 28-29 21.910173205897163 27.628055408788683 28.592219328857592 21.869552056456563 30-31 22.086711741476844 27.620708170395464 28.454002802329732 21.83857728579796 32-33 21.91301036885739 27.744760350891568 28.395398981937504 21.946830298313543 34-35 22.050824776607335 27.722960007203273 28.435972601096974 21.790242615092417 36-37 22.0310021199027 27.6665442659309 28.383012439712758 21.919441174453645 38-39 21.905785162994075 27.73968740929451 28.45366555000959 21.90086187770183 40-41 22.048656052863176 27.631133241809362 28.356138612362102 21.96407209296536 42-43 21.974522012436516 27.753808758543396 28.14784444134442 22.123824787675662 44-45 22.02854325816112 27.794711880104096 28.03216140435998 22.144583457374814 46-47 22.116574467789178 27.74311523732483 27.853673198819905 22.28663709606609 48-49 22.034825749882252 27.85908380966037 27.82052281822811 22.285567622229273 50-51 22.066767296733474 27.94408910793323 27.7138196237335 22.275323971599796 52-53 22.18854102106421 27.82168317630191 27.611321071924987 22.378454730708892 54-55 22.15887159584916 27.742007605950747 27.672775613493776 22.42634518470631 56-57 22.14876033988728 27.81648157131398 27.628145584509067 22.406612504289676 58-59 22.088010015971584 27.823756896463685 27.634014823706405 22.454218263858323 60-61 22.159583069182506 27.811337816461023 27.656436139249863 22.372642975106608 62-63 22.171230520914467 27.887241553562614 27.61672674771049 22.324801177812425 64-65 22.087487345071946 27.82808511426589 27.635800863459302 22.448626677202867 66-67 22.163605666545376 27.96011212371068 27.39223182807762 22.484050381666325 68-69 22.148960446231943 27.925161776587494 27.421671824654297 22.50420595252627 70-71 22.106152574474514 27.72346304629246 27.551260358487077 22.61912402074595 72-73 22.177206223027916 27.762555486878387 27.413685532542527 22.646552757551174 74-75 22.10396408676424 27.794520981797525 27.435004458061428 22.666510473376807 76-77 22.30970000714145 27.757249054329204 27.34939938830387 22.58365155022548 78-79 22.24634564621272 27.74931233679647 27.30617412225645 22.698167894734357 80-81 22.2662249453313 27.735023638845302 27.284758468665988 22.713992947157415 82-83 22.32478319733364 27.70409234410215 27.404700114361276 22.566424344202936 84-85 22.320754997793514 27.75945203956141 27.334790000776447 22.58500296186863 86-87 22.26987787615772 27.719632252951737 27.417250011498446 22.593239859392096 88-89 22.26034860813523 27.67714727134579 27.463384055294497 22.599120065224483 90-91 22.32436219888216 27.696320279260263 27.50804651150127 22.471271010356304 92-93 22.409806599208444 27.606225542677308 27.51311080150093 22.47085705661332 94-95 22.183408074701237 27.636435915233758 27.61001465357188 22.570141356493124 96-97 22.135104976649664 27.64624097197818 27.69730497261052 22.521349078761638 98-99 22.276156783558022 28.233532699524755 27.793416401538764 21.696894115378463 100-101 26.21382802114191 35.491523715004746 28.55195572818848 9.742692535664865 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5171.0 1 4582.5 2 5621.0 3 7733.5 4 10156.0 5 15037.0 6 19322.5 7 23109.5 8 25631.5 9 25666.5 10 24425.5 11 22902.0 12 24922.5 13 32673.0 14 50378.0 15 74135.0 16 92209.0 17 100561.0 18 102989.5 19 102450.0 20 99687.0 21 98265.5 22 101304.5 23 112313.0 24 132784.5 25 163122.0 26 201560.5 27 242036.5 28 284365.5 29 330240.5 30 373022.5 31 415387.5 32 461572.5 33 507991.5 34 553392.0 35 598132.5 36 647873.5 37 690307.5 38 723394.0 39 756216.5 40 785364.5 41 810020.5 42 825176.5 43 841149.5 44 859847.0 45 873209.5 46 880002.0 47 878081.0 48 874415.5 49 867016.0 50 854374.0 51 832723.5 52 799415.5 53 757484.0 54 709181.5 55 660014.5 56 606101.0 57 548186.5 58 489871.5 59 425352.5 60 358696.0 61 294667.0 62 235607.0 63 184177.0 64 138736.0 65 104681.0 66 80269.0 67 62010.5 68 47884.0 69 35215.5 70 25598.5 71 18594.0 72 12968.5 73 8959.5 74 6163.5 75 4191.0 76 2882.5 77 1948.5 78 1303.5 79 883.0 80 624.5 81 444.0 82 333.5 83 236.5 84 163.0 85 110.5 86 85.5 87 73.0 88 48.5 89 32.5 90 21.0 91 13.5 92 11.5 93 6.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0035087606109610804 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 9.106896352353015E-4 14-15 0.0 16-17 0.0 18-19 4.1688244882705905E-4 20-21 0.0 22-23 0.0015536724075275775 24-25 2.159894615017777E-4 26-27 0.0053947915671857085 28-29 4.1006192556381963E-4 30-31 0.0 32-33 4.992239688210668E-6 34-35 2.3061646086152893E-4 36-37 0.022170019912658344 38-39 0.009774373769712396 40-41 0.014067970521006596 42-43 0.0018551412441323385 44-45 0.0032517659761935095 46-47 0.0 48-49 7.284735135901169E-4 50-51 1.0880885477755471E-5 52-53 5.5013165475695815E-6 54-55 0.004731138915584021 56-57 0.009730811022272098 58-59 0.012826397519009066 60-61 0.006691549789524022 62-63 0.007851895847720666 64-65 8.965465975047268E-4 66-67 1.0847404023374469E-4 68-69 6.121755721989769E-6 70-71 1.3687847334959016E-4 72-73 9.483854796239854E-6 74-75 1.766647059025702E-4 76-77 3.591949331309651E-5 78-79 9.96637312486427E-6 80-81 0.0021722862561681764 82-83 0.0022472611074413123 84-85 0.01012577120382995 86-87 0.011429183655180242 88-89 0.04721900976544292 90-91 4.661974060328779E-4 92-93 7.752500171757978E-4 94-95 3.918905462244892E-6 96-97 0.00977717075144801 98-99 1.1072417271369701E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 690.0 20-21 2172.0 22-23 4348.0 24-25 9059.0 26-27 11152.0 28-29 20365.0 30-31 53800.0 32-33 76487.0 34-35 111800.0 36-37 161495.0 38-39 170203.0 40-41 182078.0 42-43 205689.0 44-45 241032.0 46-47 241865.0 48-49 223570.0 50-51 208925.0 52-53 195242.0 54-55 215149.0 56-57 226438.0 58-59 231872.0 60-61 228707.0 62-63 225560.0 64-65 243686.0 66-67 257859.0 68-69 262119.0 70-71 259156.0 72-73 250186.0 74-75 254245.0 76-77 256096.0 78-79 272766.0 80-81 273090.0 82-83 262071.0 84-85 261596.0 86-87 274132.0 88-89 292012.0 90-91 311721.0 92-93 322886.0 94-95 386563.0 96-97 481273.0 98-99 1554201.0 100-101 1.0426209E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.06637812545455 #Duplication Level Percentage of deduplicated Percentage of total 1 90.35571003166648 76.86232995347669 2 6.5967783391527925 11.22328081216359 3 1.6031084624379854 4.091118919255972 4 0.6367946540217914 2.1667925930914285 5 0.29922905339787875 1.2727165901232893 6 0.15136681194348026 0.7725735876257197 7 0.10439956931068255 0.6216625267381987 8 0.06353826044323017 0.4323975750637944 9 0.04352615288714206 0.3332350961859575 >10 0.14105746520448578 1.8571675222151391 >50 0.00342053590272674 0.19676476052105407 >100 0.0010069772686946243 0.12899886441570216 >500 5.310814670655148E-5 0.028741229115645927 >1k 1.0578215928173405E-5 0.012219970007805616 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.925772591120454E-6 2 0.0 4.962886295560227E-6 0.0 0.0 9.925772591120454E-6 3 0.0 4.962886295560227E-6 0.0 4.962886295560227E-6 9.925772591120454E-6 4 0.0 2.4814431477801134E-5 0.0 1.488865888668068E-5 1.488865888668068E-5 5 0.0 2.4814431477801134E-5 0.0 2.977731777336136E-5 1.488865888668068E-5 6 2.977731777336136E-5 2.4814431477801134E-5 0.0 3.474020406892159E-5 2.977731777336136E-5 7 2.977731777336136E-5 2.4814431477801134E-5 0.0 3.9703090364481816E-5 3.474020406892159E-5 8 2.977731777336136E-5 3.474020406892159E-5 0.0 4.962886295560227E-5 3.474020406892159E-5 9 2.977731777336136E-5 8.933195332008408E-5 0.0 6.451752184228295E-5 3.9703090364481816E-5 10-11 3.474020406892159E-5 8.933195332008408E-5 0.0 6.699896499006306E-5 3.9703090364481816E-5 12-13 3.474020406892159E-5 8.933195332008408E-5 0.0 7.196185128562329E-5 4.218453351226193E-5 14-15 3.474020406892159E-5 1.3896081627568635E-4 0.0 8.933195332008408E-5 7.196185128562329E-5 16-17 5.4591749251162496E-5 1.488865888668068E-4 0.0 1.0918349850232498E-4 7.940618072896363E-5 18-19 5.7073192398942604E-5 1.9107112237906873E-4 0.0 1.7121957719682784E-4 7.940618072896363E-5 20-21 6.699896499006306E-5 2.2581132644799033E-4 0.0 3.2258760921141476E-4 7.940618072896363E-5 22-23 7.44432944334034E-5 2.456628716302312E-4 0.0 6.402123321272693E-4 9.18133964678642E-5 24-25 7.940618072896363E-5 2.754401894035926E-4 0.0 0.0016104566029092936 1.1414638479788521E-4 26-27 8.436906702452385E-5 2.928102914380534E-4 0.0 0.004392154371570801 1.1910927109344544E-4 28-29 8.436906702452385E-5 3.076989503247341E-4 0.0 0.023298269714507484 1.1910927109344544E-4 30-31 8.685051017230396E-5 3.325133818025352E-4 0.0 0.03719931422837168 1.1910927109344544E-4 32-33 1.0173916905898465E-4 3.325133818025352E-4 0.0 0.0503857031156752 1.4392370257124658E-4 34-35 1.1414638479788522E-4 3.7966080161035734E-4 0.0 0.06918015351696177 1.4392370257124658E-4 36-37 1.1414638479788522E-4 4.292896645659596E-4 0.0 0.0940318066419796 1.5384947516236704E-4 38-39 1.1910927109344544E-4 4.5162265289598065E-4 0.0 0.1340376330704906 1.5384947516236704E-4 40-41 1.1910927109344544E-4 4.714741980782215E-4 0.0 0.2021532474770547 1.5384947516236704E-4 42-43 1.2407215738900566E-4 4.987700727038028E-4 0.0 0.23626564642958792 1.5384947516236704E-4 44-45 1.2655360053678578E-4 5.508803788071852E-4 0.0 0.28392424352585277 1.5384947516236704E-4 46-47 1.3399792998012612E-4 5.756948102849863E-4 0.0 0.3349600847462464 1.637752477534875E-4 48-49 1.3399792998012612E-4 5.781762534327664E-4 0.0 0.37626370594104636 1.8362679293572838E-4 50-51 1.5384947516236704E-4 6.501381047183898E-4 0.0 0.41355483356588596 1.8362679293572838E-4 52-53 1.687381340490477E-4 6.600638773095102E-4 0.0 0.461853642994278 2.1340411070908973E-4 54-55 1.687381340490477E-4 6.650267636050704E-4 0.0 0.5561484826099223 2.456628716302312E-4 56-57 1.687381340490477E-4 6.749525361961908E-4 0.0 0.6505897273712857 2.4814431477801133E-4 58-59 1.687381340490477E-4 6.79915422491751E-4 0.0 0.7270454721975388 2.4814431477801133E-4 60-61 1.687381340490477E-4 6.923226382306516E-4 0.0 0.776540337223161 2.5310720107357156E-4 62-63 1.7370102034460793E-4 6.997669676739919E-4 0.0 0.8184990594089748 2.580700873691318E-4 64-65 1.7370102034460793E-4 7.866174778462959E-4 0.0 0.8376632448392807 2.605515305169119E-4 66-67 1.7618246349238804E-4 7.940618072896363E-4 0.0 0.8477180524740857 2.6799585996025224E-4 68-69 1.7866390664016815E-4 8.039875798807567E-4 0.0 0.8573460518874725 2.729587462558125E-4 70-71 1.8114534978794827E-4 8.238391250629976E-4 0.0 0.8664281338083477 2.779216325513727E-4 72-73 1.9107112237906873E-4 8.31283454506338E-4 0.0 0.8738302787181758 2.928102914380534E-4 74-75 1.9603400867462895E-4 8.511349996885789E-4 0.0 0.8805003978994088 2.928102914380534E-4 76-77 1.9851545182240907E-4 8.784308743141602E-4 0.0 0.8866047480429479 2.977731777336136E-4 78-79 2.034783381179693E-4 8.982824194964011E-4 0.0 0.8918157786532861 3.0273606402917385E-4 80-81 2.0844122441352953E-4 8.982824194964011E-4 0.0 0.8949448784626368 3.076989503247341E-4 82-83 2.0844122441352953E-4 9.007638626441812E-4 0.0 0.8968977742199398 3.27550495506975E-4 84-85 2.0844122441352953E-4 9.032453057919613E-4 0.0 0.8987712637965137 3.27550495506975E-4 86-87 2.0844122441352953E-4 9.106896352353017E-4 0.0 0.8990293338838828 3.27550495506975E-4 88-89 2.1836699700464998E-4 9.379855098608828E-4 0.0 0.8990814441899863 3.27550495506975E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20140 0.0 44.023674 1 GTATCAA 34140 0.0 32.03003 1 TCAACGC 41860 0.0 25.283636 4 ATCAACG 42890 0.0 24.704992 3 CAACGCA 43155 0.0 24.534376 5 AACGCAG 44565 0.0 23.785595 6 TATCAAC 45070 0.0 23.72824 2 GTACATG 53035 0.0 20.980152 1 TACATGG 53915 0.0 20.21391 2 ACGCAGA 53385 0.0 19.833227 7 ACATGGG 53915 0.0 19.751482 3 CGCAGAG 54985 0.0 19.248684 8 CATGGGG 38740 0.0 17.103903 4 AGAGTAC 57695 0.0 16.64729 10-11 GCAGAGT 65225 0.0 15.90145 9 GAGTACT 36745 0.0 15.4957 12-13 GTGGTAT 11075 0.0 15.2894 1 CAGAGTA 63375 0.0 14.962131 10-11 AGTACTT 41970 0.0 14.174187 12-13 ATGGGGG 23980 0.0 14.139063 5 >>END_MODULE