##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139564_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12345346 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.810654638598223 31.0 31.0 34.0 30.0 34.0 2 31.956337716253557 31.0 31.0 34.0 30.0 34.0 3 32.02163608861186 33.0 31.0 34.0 30.0 34.0 4 35.72784375585747 37.0 35.0 37.0 33.0 37.0 5 35.57844583699801 37.0 35.0 37.0 33.0 37.0 6 35.5746027693351 37.0 35.0 37.0 33.0 37.0 7 35.450927823327106 37.0 35.0 37.0 33.0 37.0 8 35.44432241915293 37.0 35.0 37.0 33.0 37.0 9 37.04321750074887 39.0 37.0 39.0 33.0 39.0 10-11 36.915131499757074 39.0 37.0 39.0 33.0 39.0 12-13 36.86890306679132 39.0 37.0 39.0 33.0 39.0 14-15 38.02140340983557 40.0 37.0 41.0 33.0 41.0 16-17 38.008577442867946 40.0 37.0 41.0 33.0 41.0 18-19 38.023663532800136 40.0 37.0 41.0 33.0 41.0 20-21 38.004828724548645 40.0 37.0 41.0 33.0 41.0 22-23 37.912239783601066 40.0 37.0 41.0 32.5 41.0 24-25 37.808913728598185 40.0 37.0 41.0 32.0 41.0 26-27 37.63256821262456 39.5 37.0 41.0 32.0 41.0 28-29 37.491512071136995 39.0 36.0 41.0 32.0 41.0 30-31 37.35670444150503 39.0 36.0 41.0 31.5 41.0 32-33 37.532713400747625 39.0 36.5 41.0 32.0 41.0 34-35 37.49874461596316 39.5 36.0 41.0 32.0 41.0 36-37 37.365658528435574 39.0 36.0 41.0 31.0 41.0 38-39 37.19695807889458 39.0 36.0 41.0 31.0 41.0 40-41 37.137567852082036 39.0 36.0 40.0 31.0 41.0 42-43 37.023760269369845 39.0 36.0 40.0 31.0 41.0 44-45 37.090558255376784 39.0 35.5 40.0 31.0 41.0 46-47 37.24720314265177 39.0 36.0 41.0 31.0 41.0 48-49 37.17035477346192 39.0 36.0 41.0 31.0 41.0 50-51 37.02264751089325 39.0 35.5 41.0 31.0 41.0 52-53 36.882064639563126 39.0 35.0 40.0 30.5 41.0 54-55 36.74368222475033 39.0 35.0 40.0 30.0 41.0 56-57 36.57935977226582 38.5 35.0 40.0 30.0 41.0 58-59 36.43129793930852 38.0 35.0 40.0 30.0 41.0 60-61 36.19159275344184 38.0 34.5 40.0 29.5 41.0 62-63 35.918700585534445 38.0 34.0 40.0 29.0 41.0 64-65 35.697322505614 37.0 34.0 40.0 29.0 41.0 66-67 35.43986857248834 37.0 34.0 39.5 29.0 41.0 68-69 35.14526261876577 36.0 34.0 39.0 28.5 40.5 70-71 34.83757668836907 36.0 33.0 39.0 28.0 40.0 72-73 34.506023316270806 35.0 33.0 38.0 28.0 40.0 74-75 34.174619707349464 35.0 33.0 37.5 28.0 39.5 76-77 33.06463473640561 34.0 31.5 36.0 26.0 39.0 78-79 33.457538293606106 35.0 32.0 36.0 27.0 39.0 80-81 33.33412509939512 35.0 32.0 36.0 27.0 38.5 82-83 33.094724742570534 35.0 32.0 36.0 27.0 37.0 84-85 32.905818959046215 34.0 32.0 35.0 27.0 37.0 86-87 32.70901824700546 34.0 32.0 35.0 27.0 36.5 88-89 32.49162002782006 34.0 31.5 35.0 26.0 36.0 90-91 32.36284557676811 34.0 31.0 35.0 26.0 36.0 92-93 32.30165894583095 34.0 31.0 35.0 26.0 35.0 94-95 32.26634743008124 34.0 31.0 35.0 27.0 35.0 96-97 32.17804036904941 34.0 31.0 35.0 26.5 35.0 98-99 32.34783133405443 34.0 31.0 35.0 27.0 35.0 100-101 31.561773100747452 33.0 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 20.0 20 140.0 21 756.0 22 3465.0 23 11400.0 24 28670.0 25 59400.0 26 104490.0 27 159526.0 28 222817.0 29 289901.0 30 362139.0 31 441515.0 32 538718.0 33 669145.0 34 863731.0 35 1144683.0 36 1641696.0 37 2366009.0 38 2313968.0 39 1088523.0 40 34632.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.76383051556433 21.675091163909055 14.102666705331709 25.45841161519491 2 14.860584987685716 22.563218245555372 38.88517888844498 23.69101787831393 3 17.55898943618105 26.430680841185012 31.198866358221146 24.81146336441279 4 12.555759879066978 18.403890826551155 37.9083016385284 31.13204765585347 5 12.843317635649903 38.06070724951735 36.10977772514436 12.986197389688389 6 30.716903357751175 38.247627891514746 17.94509445097772 13.09037429975636 7 26.38910241964867 32.466801659507965 23.384480272970883 17.759615647872486 8 24.8271129865457 36.76675404642365 21.035919122882422 17.370213844148232 9 25.59306964746067 15.514939799986166 20.876976635567768 38.015013916985396 10-11 24.30374976934628 26.524011558687782 29.265615560714135 19.906623111251804 12-13 24.7252203380934 24.167710649827068 29.142370736308244 21.96469827577129 14-15 21.911026228021473 25.68172653889166 26.25792748133588 26.149319751750983 16-17 21.896101575443897 28.592199845998646 27.163325353538088 22.348373225019373 18-19 21.934760938829196 28.013551516710688 28.453486961146616 21.598200583313503 20-21 22.547507176215465 27.322662956057613 28.225434891679235 21.90439497604769 22-23 22.36208220785134 27.35729806544026 28.057338412653145 22.223281314055253 24-25 22.20852476478963 27.45628125741282 28.15633465602066 22.178859321776898 26-27 22.23924615061217 27.543638625497067 28.066002768595638 22.151112455295127 28-29 22.110665274650636 27.543824768282484 28.117812273410237 22.227697683656647 30-31 22.38608387797793 27.46603544031842 28.039456632070813 22.108424049632834 32-33 22.272206605074956 27.566791839370214 28.02761272880842 22.133388826746412 34-35 22.204493360308753 27.59182557169063 28.167734267414897 22.03594680058572 36-37 22.30557786627306 27.536266837445694 27.97310065433136 22.185054641949883 38-39 22.14900027191576 27.575630443071326 28.093023050796685 22.182346234216237 40-41 22.287864487443603 27.464996223258503 28.050682771588665 22.19645651770923 42-43 22.24132734972034 27.54593376160065 27.882550108749587 22.33018877992943 44-45 22.24721713301054 27.653112079117815 27.731556085815818 22.368114702055827 46-47 22.348515625810002 27.49307740890792 27.553151066812813 22.60525589846927 48-49 22.28380787303798 27.599835578936215 27.582731816609357 22.533624731416452 50-51 22.231395834177242 27.714363604162934 27.498223958983402 22.556016602676426 52-53 22.31904846037003 27.649638350313175 27.45960076953956 22.57171241977724 54-55 22.332260833177735 27.602601539710896 27.4135732736005 22.65156435351087 56-57 22.3956927367937 27.6585956597097 27.34005829751331 22.605653305983292 58-59 22.26692146213447 27.72032414179902 27.527472819789295 22.485281576277217 60-61 22.3016352379562 27.586605790570832 27.483318042774595 22.628440928698367 62-63 22.49455299208298 27.696856107332312 27.44808872560065 22.360502174984056 64-65 22.128824489440884 27.63016512574937 27.427163894326416 22.81384649048333 66-67 22.182264850415933 27.71282921414075 27.24368719444049 22.861218741002826 68-69 22.168932732582718 27.941489070454185 27.316246393758675 22.573331803204418 70-71 22.141033123752724 27.713999090491885 27.384616260413104 22.760351525342283 72-73 22.205253818588126 27.728760176953028 27.009928530571486 23.05605747388736 74-75 22.168719146014055 27.734192140118495 27.02765338111341 23.069435332754036 76-77 22.332329477559977 27.41573512299035 27.248687373307046 23.003248026142632 78-79 22.255118975726955 27.40805285589535 27.19133543030677 23.14549273807093 80-81 22.600079384726875 27.45248879416813 26.88335285681291 23.064078964292086 82-83 22.61566931835457 27.740124627508884 26.99293564008442 22.65127041405213 84-85 22.3351084444572 27.468253261946113 26.894472275252273 23.30216601834441 86-87 22.22969505814166 27.830854232376378 26.960999348696298 22.978451360785662 88-89 22.591463195712688 27.443135443319743 26.97880040498718 22.986600955980382 90-91 22.632979519234727 27.849668650758076 26.980022605803843 22.537329224203347 92-93 22.313355708661206 27.743728926645066 27.003257147063486 22.93965821763024 94-95 22.40213067224929 27.40761643249195 27.196343455158956 22.993909440099806 96-97 22.3317077619695 27.841797629898014 27.2724055136225 22.554089094509987 98-99 22.58051856131352 28.17361682404095 27.436157404791405 21.809707209854125 100-101 25.90497785990815 35.78543687278898 28.333447033282877 9.976138234019995 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3920.0 1 3385.0 2 3734.0 3 4801.5 4 6085.5 5 9059.0 6 11517.0 7 13347.5 8 14454.5 9 14208.0 10 13401.5 11 12396.0 12 13298.5 13 17447.5 14 27175.5 15 40150.5 16 49867.5 17 54552.0 18 56129.0 19 56231.0 20 55302.5 21 54860.5 22 56672.0 23 63232.0 24 75096.0 25 91508.0 26 112569.0 27 135963.0 28 161179.5 29 188322.0 30 214234.5 31 238897.0 32 266225.0 33 294949.0 34 323080.0 35 352108.0 36 382348.5 37 408329.5 38 430475.5 39 451008.0 40 468897.5 41 484883.5 42 496703.5 43 509080.5 44 522946.0 45 535762.5 46 544574.0 47 547396.5 48 548059.5 49 548810.0 50 546672.0 51 534675.5 52 513105.5 53 490374.0 54 465107.0 55 432876.5 56 398609.5 57 362813.0 58 324377.5 59 280655.5 60 233659.5 61 190187.0 62 152698.5 63 119757.0 64 90634.0 65 68901.5 66 52633.0 67 40371.0 68 31306.5 69 23362.0 70 17267.0 71 12788.5 72 9104.5 73 6241.0 74 4307.5 75 3037.0 76 2102.5 77 1425.0 78 976.5 79 695.5 80 492.5 81 329.0 82 234.5 83 163.5 84 113.5 85 86.5 86 72.0 87 59.0 88 42.5 89 28.0 90 17.5 91 8.0 92 4.5 93 3.0 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0027054729774280933 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 9.72026219435243E-5 20-21 0.001956310523103663 22-23 4.415488740523966E-4 24-25 3.6468909950359736E-5 26-27 3.081162981724122E-4 28-29 0.003635447987410314 30-31 3.779605743228786E-4 32-33 4.076399886676083E-5 34-35 0.002280425896762131 36-37 0.05575736858842796 38-39 0.03134011999287645 40-41 0.042650043620983256 42-43 8.343130158632551E-4 44-45 0.0024883884130185116 46-47 0.0015052892480529277 48-49 6.106880156167425E-4 50-51 4.446494179450189E-6 52-53 9.84780775208634E-4 54-55 0.002373710852187661 56-57 0.0011466329400013954 58-59 0.003943300288476916 60-61 0.0015671518201621282 62-63 1.0025157895043375E-4 64-65 7.942726356319809E-4 66-67 3.3946841312833574E-4 68-69 1.0000832569311395E-4 70-71 0.0011639372592073026 72-73 0.0016218606150260738 74-75 5.459110683574093E-4 76-77 7.899690582997698E-4 78-79 9.775246447539672E-5 80-81 0.002439568675407145 82-83 0.0025082473427233097 84-85 0.004374907277227655 86-87 0.004302810115526061 88-89 0.07345166122496131 90-91 5.568503856831441E-4 92-93 3.137724256290321E-5 94-95 5.812893799334514E-5 96-97 0.007796708056598325 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 425.0 20-21 1434.0 22-23 2751.0 24-25 5824.0 26-27 8606.0 28-29 15806.0 30-31 33929.0 32-33 48242.0 34-35 69578.0 36-37 103145.0 38-39 107302.0 40-41 112356.0 42-43 126250.0 44-45 145915.0 46-47 148070.0 48-49 138172.0 50-51 128806.0 52-53 120235.0 54-55 134404.0 56-57 143100.0 58-59 88286.0 60-61 152483.0 62-63 148339.0 64-65 156185.0 66-67 166146.0 68-69 161918.0 70-71 159119.0 72-73 153888.0 74-75 158456.0 76-77 157541.0 78-79 167580.0 80-81 169648.0 82-83 161721.0 84-85 165922.0 86-87 175333.0 88-89 188391.0 90-91 200292.0 92-93 216366.0 94-95 279813.0 96-97 349658.0 98-99 1064909.0 100-101 6109002.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.05982368668974 #Duplication Level Percentage of deduplicated Percentage of total 1 89.96488995473439 76.52397677542152 2 6.898643410725862 11.735947843873715 3 1.7319634749427788 4.419615234312578 4 0.6470411604050063 2.201488280883239 5 0.2937126721621291 1.2491574054328605 6 0.15756111923316915 0.804127261311052 7 0.09127995097539202 0.543497957526757 8 0.05590245116707651 0.3804042111940249 9 0.03549705521431404 0.2717435932133619 >10 0.11996783913940036 1.6162506958303382 >50 0.002838007768658924 0.15860774824816823 >100 6.87056553212171E-4 0.08574740430973579 >500 1.5846978604844634E-5 0.009435588442663805 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 8.100218495293692E-6 0.0 4 0.0 2.4300655485881076E-5 0.0 8.100218495293692E-6 8.100218495293692E-6 5 0.0 4.050109247646846E-5 0.0 1.6200436990587383E-5 8.100218495293692E-6 6 0.0 4.050109247646846E-5 0.0 1.6200436990587383E-5 8.100218495293692E-6 7 0.0 4.050109247646846E-5 0.0 1.6200436990587383E-5 8.100218495293692E-6 8 0.0 4.050109247646846E-5 0.0 1.6200436990587383E-5 8.100218495293692E-6 9 0.0 1.5390415141058015E-4 0.0 3.2400873981174766E-5 8.100218495293692E-6 10-11 0.0 1.5390415141058015E-4 0.0 4.4551201724115304E-5 8.100218495293692E-6 12-13 0.0 1.5390415141058015E-4 0.0 5.670152946705584E-5 8.100218495293692E-6 14-15 0.0 1.8630502539175491E-4 0.0 5.670152946705584E-5 2.4300655485881076E-5 16-17 0.0 1.8630502539175491E-4 0.0 5.670152946705584E-5 4.050109247646846E-5 18-19 0.0 1.9845535313469547E-4 0.0 7.695207570529008E-5 5.670152946705584E-5 20-21 0.0 2.10605680877636E-4 0.0 1.2960349592469906E-4 5.670152946705584E-5 22-23 0.0 2.4300655485881076E-4 0.0 2.268061178682234E-4 6.0751638714702684E-5 24-25 0.0 2.794575380876324E-4 0.0 2.956579750782198E-4 6.480174796234953E-5 26-27 0.0 2.997080843258666E-4 0.0 5.224640929464431E-4 6.480174796234953E-5 28-29 0.0 3.15908521316454E-4 0.0 0.0016159935898110915 6.480174796234953E-5 30-31 0.0 4.009608155170378E-4 0.0 0.005131488416768554 6.480174796234953E-5 32-33 0.0 4.3741179874585935E-4 0.0 0.012486486810495226 8.100218495293693E-5 34-35 4.050109247646846E-6 5.062636559558558E-4 0.0 0.023612136913781112 8.910240344823061E-5 36-37 8.100218495293692E-6 5.670152946705585E-4 0.0 0.0398652253245879 8.910240344823061E-5 38-39 8.100218495293692E-6 5.994161686517332E-4 0.0 0.06980363288319338 9.315251269587746E-5 40-41 8.100218495293692E-6 6.237168241376142E-4 0.0 0.1296318466894326 9.72026219435243E-5 42-43 8.100218495293692E-6 6.31817042632908E-4 0.0 0.15576315155525006 1.0125273119117115E-4 44-45 8.100218495293692E-6 6.966187905952575E-4 0.0 0.195271967266045 1.05302840438818E-4 46-47 8.100218495293692E-6 7.533203200623134E-4 0.0 0.24160116694987732 1.0935294968646484E-4 48-49 8.100218495293692E-6 7.533203200623134E-4 0.0 0.27999215250832177 1.2150327742940538E-4 50-51 8.100218495293692E-6 7.978715217864286E-4 0.0 0.3171276041999957 1.2150327742940538E-4 52-53 8.100218495293692E-6 8.181220680246628E-4 0.0 0.36555881058335665 1.2150327742940538E-4 54-55 8.100218495293692E-6 8.221721772723097E-4 0.0 0.47065104534129704 1.2150327742940538E-4 56-57 8.100218495293692E-6 8.343225050152503E-4 0.0 0.5792992760186713 1.2150327742940538E-4 58-59 8.100218495293692E-6 8.343225050152503E-4 0.0 0.6708843964357094 1.2150327742940538E-4 60-61 8.100218495293692E-6 8.464728327581908E-4 0.0 1.199192797026507 1.2150327742940538E-4 62-63 8.100218495293692E-6 8.66723378996425E-4 0.0 1.212404253392331 1.2150327742940538E-4 64-65 8.100218495293692E-6 9.072244714728935E-4 0.0 1.2267537904567436 1.2150327742940538E-4 66-67 8.100218495293692E-6 9.153246899681872E-4 0.0 1.2380171442744496 1.2150327742940538E-4 68-69 8.100218495293692E-6 9.193747992158341E-4 0.0 1.2497098096724062 1.2150327742940538E-4 70-71 8.100218495293692E-6 9.274750177111278E-4 0.0 1.2609974641455979 1.2150327742940538E-4 72-73 8.100218495293692E-6 9.355752362064214E-4 0.0 1.2698874539441827 1.2960349592469906E-4 74-75 8.100218495293692E-6 9.598758916923025E-4 0.0 1.2788665461462156 1.2960349592469906E-4 76-77 8.100218495293692E-6 0.0010125273119117113 0.0 1.2872624226165876 1.2960349592469906E-4 78-79 8.100218495293692E-6 0.0010449281858928862 0.0 1.2946255212288096 1.2960349592469906E-4 80-81 8.100218495293692E-6 0.0010449281858928862 0.0 1.2993884497040424 1.336536051723459E-4 82-83 8.100218495293692E-6 0.0010449281858928862 0.0 1.3033454064389933 1.4580393291528646E-4 84-85 8.100218495293692E-6 0.0010449281858928862 0.0 1.3070593566190856 1.4580393291528646E-4 86-87 8.100218495293692E-6 0.0010449281858928862 0.0 1.3075615701657937 1.4580393291528646E-4 88-89 8.100218495293692E-6 0.0010611286228834737 0.0 1.307626371913756 1.4580393291528646E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12540 0.0 39.270504 1 GTATCAA 20050 0.0 29.08777 1 TCAACGC 24055 0.0 23.68585 4 ATCAACG 24125 0.0 23.549646 3 CAACGCA 24410 0.0 23.341383 5 AACGCAG 25060 0.0 22.687237 6 TATCAAC 25760 0.0 22.387346 2 ACCGAGG 17805 0.0 21.382538 92-93 GTACATG 30385 0.0 20.96205 1 GACCGAG 17880 0.0 20.736961 90-91 AGACCGA 18120 0.0 20.332087 90-91 TACATGG 31190 0.0 20.094814 2 GAGACCG 18350 0.0 20.041317 88-89 CGAGACC 18715 0.0 19.737091 88-89 ACATGGG 31080 0.0 19.576115 3 ACGAGAC 19700 0.0 19.412334 86-87 ACGCAGA 29890 0.0 18.993921 7 GCCCACG 19580 0.0 18.70791 82-83 CACGAGA 20145 0.0 18.498367 86-87 CCCACGA 19750 0.0 18.481592 84-85 >>END_MODULE