##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139558_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4216596 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.634719807161986 33.0 33.0 33.0 33.0 33.0 2 32.63334381572245 33.0 33.0 33.0 33.0 33.0 3 32.63172663447008 33.0 33.0 33.0 33.0 33.0 4 36.53952216432402 37.0 37.0 37.0 37.0 37.0 5 36.55918541875959 37.0 37.0 37.0 37.0 37.0 6 36.54731518030184 37.0 37.0 37.0 37.0 37.0 7 36.51804749613195 37.0 37.0 37.0 37.0 37.0 8 36.51898545651516 37.0 37.0 37.0 37.0 37.0 9 36.55224451192384 37.0 37.0 37.0 37.0 37.0 10-11 36.48763030653162 37.0 37.0 37.0 37.0 37.0 12-13 36.48659617852884 37.0 37.0 37.0 37.0 37.0 14-15 38.53920117080223 40.0 37.0 40.0 37.0 40.0 16-17 38.473138522163374 40.0 37.0 40.0 37.0 40.0 18-19 38.484277957859845 40.0 37.0 40.0 37.0 40.0 20-21 38.48168819266611 40.0 37.0 40.0 37.0 40.0 22-23 38.4865859656888 40.0 37.0 40.0 37.0 40.0 24-25 38.46237830633653 40.0 37.0 40.0 37.0 40.0 26-27 38.346175496586156 40.0 37.0 40.0 37.0 40.0 28-29 38.292311589527586 40.0 37.0 40.0 37.0 40.0 30-31 38.23252928478752 40.0 37.0 40.0 37.0 40.0 32-33 38.15998260364224 40.0 37.0 40.0 37.0 40.0 34-35 38.11772751065443 40.0 37.0 40.0 35.0 40.0 36-37 38.07035855411321 40.0 37.0 40.0 33.0 40.0 38-39 38.00425429302379 40.0 37.0 40.0 33.0 40.0 40-41 37.95550866949797 40.0 37.0 40.0 33.0 40.0 42-43 37.90275414974903 40.0 37.0 40.0 33.0 40.0 44-45 37.85812536197983 40.0 37.0 40.0 33.0 40.0 46-47 37.79989922895665 40.0 37.0 40.0 33.0 40.0 48-49 37.79523464332188 40.0 37.0 40.0 33.0 40.0 50-51 37.70329909487799 40.0 37.0 40.0 33.0 40.0 52-53 37.57852674864466 40.0 37.0 40.0 33.0 40.0 54-55 37.42430828104099 40.0 37.0 40.0 33.0 40.0 56-57 37.33201974181263 40.0 37.0 40.0 33.0 40.0 58-59 37.19817530257477 37.0 37.0 40.0 33.0 40.0 60-61 37.04816192732575 37.0 37.0 40.0 33.0 40.0 62-63 36.85853852740165 37.0 37.0 40.0 33.0 40.0 64-65 36.68792977570082 37.0 37.0 40.0 33.0 40.0 66-67 36.48553756906941 37.0 37.0 40.0 33.0 40.0 68-69 36.208395868046225 37.0 37.0 40.0 33.0 40.0 70-71 35.98126279066092 37.0 37.0 37.0 33.0 40.0 72-73 35.66155262017489 37.0 33.0 37.0 33.0 40.0 74-75 35.573413037388036 37.0 33.0 37.0 33.0 40.0 76-77 33.898321510639526 35.0 33.0 37.0 27.0 37.0 78-79 35.1299875422109 37.0 33.0 37.0 33.0 37.0 80-81 35.181968353259336 37.0 33.0 37.0 33.0 37.0 82-83 35.031200330623406 37.0 33.0 37.0 33.0 37.0 84-85 34.90126739498825 37.0 33.0 37.0 33.0 37.0 86-87 34.799596529269984 37.0 33.0 37.0 33.0 37.0 88-89 34.689244938654454 37.0 33.0 37.0 33.0 37.0 90-91 34.59911379591966 37.0 33.0 37.0 33.0 37.0 92-93 34.566498093201126 37.0 33.0 37.0 33.0 37.0 94-95 34.57731002634101 37.0 33.0 37.0 33.0 37.0 96-97 34.57047709554996 37.0 33.0 37.0 33.0 37.0 98-99 34.572052302829206 37.0 33.0 37.0 33.0 37.0 100 34.56967952639499 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 2.0 19 5.0 20 30.0 21 169.0 22 609.0 23 1866.0 24 4130.0 25 7915.0 26 14094.0 27 21911.0 28 32236.0 29 45012.0 30 60803.0 31 80679.0 32 106480.0 33 141509.0 34 196381.0 35 285207.0 36 504714.0 37 1226765.0 38 1438712.0 39 47365.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.67261933559677 20.03175072973555 14.205297353599919 24.09033258106776 2 14.630521871196578 20.59483526522342 42.044103822135206 22.730539041444807 3 18.28337360278291 25.96018209949447 30.299914907664853 25.456529390057764 4 12.468920427757366 17.96814302342458 38.346026036167565 31.216910512650486 5 13.502242092910965 37.4853080541745 35.40320201413652 13.60924783877801 6 30.1928380143604 37.49614618047354 18.605386904507807 13.705628900658256 7 26.63937925283807 32.4379902651333 22.740641977557253 18.18198850447138 8 24.40025081843269 36.833289221922136 20.96826444838443 17.798195511260744 9 25.437379078943813 16.91583301593656 20.969981933285492 36.676805971834135 10-11 24.337378799939906 26.60402907082019 28.645470488118136 20.41312164112177 12-13 25.16467702433271 24.1316021701912 28.72378774587125 21.979933059604843 14-15 22.337713311996698 25.48666144120706 26.304181039645115 25.871444207151136 16-17 21.9079679438106 28.710908040514198 26.986685468562793 22.39443854711241 18-19 21.942094997955696 27.73633044285011 28.745734711127174 21.57583984806702 20-21 22.6829633584131 26.883469965880302 28.697933904338917 21.735632771367676 22-23 22.406047868642652 27.021915424047883 28.54973823355501 22.022298473754454 24-25 22.266533456200733 27.168921364112812 28.61053362985037 21.954011549836082 26-27 22.135226393365638 27.482422528967916 28.543062638657883 21.839288439008566 28-29 22.0117120915582 27.330809253440226 28.64647877560284 22.01099987939874 30-31 22.48213941534733 27.079690731033295 28.554203467000843 21.883966386618532 32-33 22.13666758275649 27.314190548906097 28.550816550393115 21.998325317944296 34-35 22.27620814648194 27.174066698186643 28.624200658098964 21.925524497232452 36-37 22.164662345241247 27.31704107287818 28.443801433686 22.074495148194575 38-39 22.084911805967103 27.132477465568428 28.62257812550837 22.1600326029561 40-41 22.283086808923375 27.02811590688652 28.58461445198836 22.104182832201747 42-43 22.307514204221253 27.07389075501122 28.406025853507373 22.212569187260158 44-45 22.196010510493146 27.332289403215306 28.20718781318211 22.264512273109442 46-47 22.481509982020654 27.186240280020353 27.751623002686287 22.580626735272713 48-49 22.373622408775493 27.287324469477824 27.810499071061596 22.528554050685084 50-51 22.258605431733784 27.459456619495352 27.805610013896402 22.476327934874462 52-53 22.410568870443704 27.443348572656852 27.797708950330914 22.348373606568533 54-55 22.376939802390357 27.382889306931403 27.670333392606317 22.56983749807192 56-57 22.464039519223775 27.563627606559134 27.47527109326037 22.497061780956724 58-59 22.275161117337426 27.685590931285713 27.693841995125485 22.345405956251373 60-61 22.496899032987656 27.847742749906896 27.41328507019716 22.242073146908286 62-63 22.32423362520659 27.997216502580645 27.369043816844275 22.30950605536849 64-65 22.343728839921535 27.806176698136102 27.40387206809305 22.446222393849315 66-67 22.479785688933184 27.73020083056787 27.22904935716573 22.560964123333214 68-69 22.44485162691433 27.636560517684817 27.36593088021266 22.5526569751882 70-71 22.439439548959104 27.436329451509383 27.43231820730027 22.691912792231246 72-73 22.552565457441993 27.40442634579205 27.2818470494729 22.761161147293056 74-75 22.43068774684388 27.592630866908234 27.28461087098547 22.692070515262415 76-77 22.5800655911719 27.491060796831945 27.2475568455874 22.681316766408756 78-79 22.503948063586616 27.438747134400398 27.23791429502439 22.819390506988597 80-81 22.501198787360632 27.516948360499306 27.189020604898147 22.79283224724192 82-83 22.599614635278137 27.48216479580269 27.279402354066217 22.638818214852954 84-85 22.6897674942866 27.436707784559722 27.200107756076243 22.673416965077436 86-87 22.503296885784884 27.438573120745076 27.362192576567857 22.695937416902186 88-89 22.615788909882824 27.39649596240237 27.352157981786174 22.63555714592863 90-91 22.66585647920074 27.419554973693028 27.32795473131417 22.58663381579207 92-93 22.72201422048351 27.33982448575556 27.304586176938443 22.633575116822485 94-95 22.546093080776146 27.39482814895547 27.385389481999304 22.673689288269085 96-97 22.61487186427889 27.453656043844944 27.48146774730693 22.45000434456924 98-99 23.725750459822756 29.325268578889258 27.708959614439188 19.2400213468488 100 22.676682032929385 30.288783901189813 21.479266561450487 25.55526750443032 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 938.0 1 814.0 2 1039.0 3 1480.0 4 2020.0 5 3402.5 6 4647.0 7 5565.5 8 6286.5 9 6364.5 10 5885.0 11 5290.5 12 5635.5 13 7299.5 14 11194.0 15 16673.0 16 21312.5 17 24240.0 18 25030.0 19 23734.0 20 21435.0 21 19097.0 22 17702.0 23 18219.5 24 20646.5 25 25253.0 26 31662.0 27 38813.0 28 46797.0 29 55940.0 30 64999.5 31 73653.0 32 83445.5 33 93140.5 34 102544.0 35 111717.0 36 121856.5 37 131102.5 38 137727.0 39 143646.0 40 149702.0 41 154437.5 42 157019.5 43 160690.0 44 164145.5 45 167769.0 46 173442.5 47 178300.0 48 179040.5 49 178434.5 50 177847.0 51 173608.5 52 165663.5 53 155751.5 54 146501.5 55 138142.0 56 127765.5 57 115739.0 58 104114.0 59 91365.0 60 77019.5 61 63115.0 62 50594.0 63 39394.5 64 29386.5 65 21671.5 66 16238.5 67 12248.5 68 9298.0 69 6744.0 70 4790.5 71 3562.5 72 2511.5 73 1698.0 74 1128.5 75 714.5 76 465.5 77 302.0 78 195.5 79 126.0 80 94.5 81 64.0 82 39.0 83 28.5 84 26.5 85 22.0 86 18.5 87 14.5 88 9.0 89 6.5 90 6.0 91 5.0 92 4.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 4.74316249410662E-5 10-11 0.0015533857168199183 12-13 2.1344231223479793E-4 14-15 0.0014466645607025192 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 67.0 20-21 259.0 22-23 507.0 24-25 1312.0 26-27 1523.0 28-29 3270.0 30-31 8334.0 32-33 10296.0 34-35 14435.0 36-37 21362.0 38-39 24749.0 40-41 26569.0 42-43 30774.0 44-45 37149.0 46-47 36487.0 48-49 33025.0 50-51 28678.0 52-53 27391.0 54-55 31529.0 56-57 34406.0 58-59 34552.0 60-61 36251.0 62-63 35676.0 64-65 37726.0 66-67 40763.0 68-69 35604.0 70-71 35356.0 72-73 33520.0 74-75 34559.0 76-77 34341.0 78-79 36753.0 80-81 37496.0 82-83 36089.0 84-85 36337.0 86-87 38671.0 88-89 41776.0 90-91 43970.0 92-93 45713.0 94-95 52095.0 96-97 139122.0 98-99 254822.0 100-101 2723282.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.78197206608179 #Duplication Level Percentage of deduplicated Percentage of total 1 92.59019466940512 83.12930271401606 2 5.666189790798432 10.174433870371653 3 1.062065538299778 2.8606301547593636 4 0.3324801170691867 1.194028823329333 5 0.14037048473169123 0.6301369469541531 6 0.06793659555839171 0.3659688914812933 7 0.03933628129332077 0.2472182235782323 8 0.022594987360584188 0.16228980192331527 9 0.017472001042235872 0.14118036385613159 >10 0.05927290320773173 0.8551331232997514 >50 0.0012832485294948653 0.0765973732584487 >100 7.670176744099322E-4 0.14613475725366626 >500 3.6365029570605325E-5 0.01694495591857879 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3715812470533104E-5 0.0 2.3715812470533104E-5 0.0 3 0.0 2.3715812470533104E-5 0.0 4.743162494106621E-5 0.0 4 0.0 1.8972649976426484E-4 0.0 7.11474374115993E-5 0.0 5 0.0 2.6087393717586416E-4 0.0 9.486324988213242E-5 0.0 6 1.422948748231986E-4 2.6087393717586416E-4 0.0 1.1857906235266552E-4 0.0 7 1.422948748231986E-4 2.6087393717586416E-4 0.0 1.1857906235266552E-4 0.0 8 1.422948748231986E-4 2.6087393717586416E-4 0.0 1.422948748231986E-4 0.0 9 1.422948748231986E-4 3.0830556211693035E-4 0.0 1.422948748231986E-4 0.0 10-11 1.660106872937317E-4 3.0830556211693035E-4 0.0 1.8972649976426484E-4 0.0 12-13 1.8972649976426484E-4 3.0830556211693035E-4 0.0 2.1344231223479793E-4 0.0 14-15 1.8972649976426484E-4 3.320213745874634E-4 0.0 2.490160309405976E-4 0.0 16-17 2.964476558816638E-4 3.320213745874634E-4 0.0 2.845897496463973E-4 0.0 18-19 3.0830556211693035E-4 3.6759509329326305E-4 0.0 3.201634683521969E-4 3.557371870579966E-5 20-21 3.0830556211693035E-4 4.0316881199906274E-4 0.0 4.150267182343293E-4 4.743162494106621E-5 22-23 3.0830556211693035E-4 4.624583431753955E-4 0.0 6.8775856164546E-4 4.743162494106621E-5 24-25 3.0830556211693035E-4 5.217478743517283E-4 0.0 0.0014110908419967196 4.743162494106621E-5 26-27 3.320213745874634E-4 5.81037405528061E-4 0.0 0.0035336560581094322 4.743162494106621E-5 28-29 3.320213745874634E-4 5.928953117633276E-4 0.0 0.010589110268093031 4.743162494106621E-5 30-31 3.320213745874634E-4 5.928953117633276E-4 0.0 0.012699817577970476 4.743162494106621E-5 32-33 3.320213745874634E-4 6.047532179985942E-4 0.0 0.017608990759370828 4.743162494106621E-5 34-35 3.5573718705799655E-4 7.114743741159931E-4 0.0 0.023644665033121504 4.743162494106621E-5 36-37 3.5573718705799655E-4 8.063376239981255E-4 0.0 0.032727821209335685 4.743162494106621E-5 38-39 3.5573718705799655E-4 8.419113427039252E-4 0.0 0.05615904393022239 4.743162494106621E-5 40-41 3.5573718705799655E-4 0.0010197799362329234 0.0 0.08072862564969469 4.743162494106621E-5 42-43 3.5573718705799655E-4 0.00103163784246819 0.0 0.09645220931765813 4.743162494106621E-5 44-45 3.7945299952852967E-4 0.0011383589985855891 0.0 0.11610075994949481 4.743162494106621E-5 46-47 4.0316881199906274E-4 0.0012332222484677214 0.0 0.13554772617533195 4.743162494106621E-5 48-49 4.150267182343293E-4 0.0012332222484677214 0.0 0.15384447549634822 4.743162494106621E-5 50-51 4.5060043694012894E-4 0.001268795967173521 0.0 0.17138231881830746 4.743162494106621E-5 52-53 4.5060043694012894E-4 0.0012806538734087877 0.0 0.21343045432856267 7.114743741159932E-5 54-55 4.5060043694012894E-4 0.0012806538734087877 0.0 0.2631506551730353 9.486324988213242E-5 56-57 4.5060043694012894E-4 0.0012806538734087877 0.0 0.3142700889532694 1.0672115611739897E-4 58-59 4.5060043694012894E-4 0.0012806538734087877 0.0 0.3475789475681331 1.1857906235266552E-4 60-61 4.7431624941066206E-4 0.0013280854983498537 0.0 0.37040541707102126 1.1857906235266552E-4 62-63 5.928953117633276E-4 0.0013636592170556535 0.0 0.38295108186793325 1.422948748231986E-4 64-65 5.928953117633276E-4 0.0016601068729373172 0.0 0.3881329868927448 1.422948748231986E-4 66-67 6.166111242338607E-4 0.0016601068729373172 0.0 0.3937180607295553 1.422948748231986E-4 68-69 6.166111242338607E-4 0.0017075384978783833 0.0 0.3991015501603663 1.5415278105846515E-4 70-71 6.166111242338607E-4 0.001743112216584183 0.0 0.40433088681011886 1.660106872937317E-4 72-73 6.640427491749268E-4 0.0017786859352899827 0.0 0.40795940611811043 1.660106872937317E-4 74-75 6.640427491749268E-4 0.0017786859352899827 0.0 0.4111847566141029 1.660106872937317E-4 76-77 6.759006554101935E-4 0.0018024017477605157 0.0 0.4141018015479785 1.660106872937317E-4 78-79 6.8775856164546E-4 0.001826117560231049 0.0 0.4158804874832685 1.660106872937317E-4 80-81 6.8775856164546E-4 0.001826117560231049 0.0 0.4167223988259724 1.660106872937317E-4 82-83 6.8775856164546E-4 0.001826117560231049 0.0 0.41727972041902994 1.660106872937317E-4 84-85 6.8775856164546E-4 0.001826117560231049 0.0 0.4174694469187942 1.7786859352899827E-4 86-87 6.8775856164546E-4 0.001849833372701582 0.0 0.41761174179361743 1.8972649976426484E-4 88 6.8775856164546E-4 0.0018972649976426482 0.0 0.41761174179361743 1.8972649976426484E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5205 0.0 53.103264 1 GTATCAA 9630 0.0 37.0038 1 TCAACGC 11685 0.0 29.877417 4 ATCAACG 11905 0.0 29.39673 3 CAACGCA 11950 0.0 29.179626 5 TATCAAC 12315 0.0 28.65974 2 AACGCAG 12420 0.0 28.109644 6 CTTATAC 5260 0.0 25.142199 1 ACGCAGA 14335 0.0 24.413828 7 CGCAGAG 14855 0.0 23.444996 8 TATACAC 6465 0.0 23.15276 3 GTACATG 13195 0.0 22.365505 1 TACATGG 13445 0.0 21.72824 2 ACATGGG 13475 0.0 20.92249 3 TTATACA 6860 0.0 20.703842 2 GCAGAGT 17195 0.0 20.254698 9 GAGTACT 10165 0.0 19.91308 12-13 TGGTATC 2285 0.0 19.168125 2 GTGGTAT 2625 0.0 18.953314 1 CAGAGTA 16595 0.0 18.68075 10-11 >>END_MODULE