##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139557_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4428418 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61324969774759 33.0 33.0 33.0 33.0 33.0 2 32.61794121512468 33.0 33.0 33.0 33.0 33.0 3 32.61663352465824 33.0 33.0 33.0 33.0 33.0 4 36.51934754126643 37.0 37.0 37.0 37.0 37.0 5 36.53644890793959 37.0 37.0 37.0 37.0 37.0 6 36.52828323794186 37.0 37.0 37.0 37.0 37.0 7 36.49809999869028 37.0 37.0 37.0 37.0 37.0 8 36.497712953022955 37.0 37.0 37.0 37.0 37.0 9 36.53691769837445 37.0 37.0 37.0 37.0 37.0 10-11 36.47008514101424 37.0 37.0 37.0 37.0 37.0 12-13 36.46587912432837 37.0 37.0 37.0 37.0 37.0 14-15 38.4955830727813 40.0 37.0 40.0 37.0 40.0 16-17 38.425282121064456 40.0 37.0 40.0 37.0 40.0 18-19 38.430596772933356 40.0 37.0 40.0 37.0 40.0 20-21 38.42854032878655 40.0 37.0 40.0 37.0 40.0 22-23 38.434587692401905 40.0 37.0 40.0 37.0 40.0 24-25 38.413955349429585 40.0 37.0 40.0 37.0 40.0 26-27 38.29025620474616 40.0 37.0 40.0 37.0 40.0 28-29 38.22957410688366 40.0 37.0 40.0 37.0 40.0 30-31 38.17010146385447 40.0 37.0 40.0 37.0 40.0 32-33 38.101659121868174 40.0 37.0 40.0 35.0 40.0 34-35 38.054487051570305 40.0 37.0 40.0 33.0 40.0 36-37 38.0076996152857 40.0 37.0 40.0 33.0 40.0 38-39 37.93061445078865 40.0 37.0 40.0 33.0 40.0 40-41 37.89279801493285 40.0 37.0 40.0 33.0 40.0 42-43 37.835136649970096 40.0 37.0 40.0 33.0 40.0 44-45 37.787399649817445 40.0 37.0 40.0 33.0 40.0 46-47 37.72813932308969 40.0 37.0 40.0 33.0 40.0 48-49 37.712868436590206 40.0 37.0 40.0 33.0 40.0 50-51 37.61765210655152 40.0 37.0 40.0 33.0 40.0 52-53 37.49746237477672 40.0 37.0 40.0 33.0 40.0 54-55 37.335617491438086 40.0 37.0 40.0 33.0 40.0 56-57 37.2427995022817 38.5 37.0 40.0 33.0 40.0 58-59 37.10920456746938 37.0 37.0 40.0 33.0 40.0 60-61 36.95540975678865 37.0 37.0 40.0 33.0 40.0 62-63 36.76357071626359 37.0 37.0 40.0 33.0 40.0 64-65 36.59638728682239 37.0 37.0 40.0 33.0 40.0 66-67 36.39768055496663 37.0 37.0 40.0 33.0 40.0 68-69 36.118671611519744 37.0 37.0 40.0 33.0 40.0 70-71 35.88959717894181 37.0 37.0 37.0 33.0 40.0 72-73 35.56964809508953 37.0 33.0 37.0 33.0 40.0 74-75 35.478751212322464 37.0 33.0 37.0 33.0 40.0 76-77 33.79542020041336 35.0 33.0 37.0 27.0 37.0 78-79 35.04414436547675 37.0 33.0 37.0 33.0 37.0 80-81 35.09245918143437 37.0 33.0 37.0 33.0 37.0 82-83 34.93876389720455 37.0 33.0 37.0 33.0 37.0 84-85 34.81991182788685 37.0 33.0 37.0 33.0 37.0 86-87 34.71949882081307 37.0 33.0 37.0 33.0 37.0 88-89 34.606150821195286 37.0 33.0 37.0 33.0 37.0 90-91 34.51403297977768 37.0 33.0 37.0 33.0 37.0 92-93 34.479709989281034 37.0 33.0 37.0 33.0 37.0 94-95 34.48836503031112 37.0 33.0 37.0 33.0 37.0 96-97 34.48148189839595 37.0 33.0 37.0 33.0 37.0 98-99 34.49271131185925 37.0 33.0 37.0 33.0 37.0 100 34.484898135075454 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 45.0 21 189.0 22 722.0 23 2067.0 24 4578.0 25 9217.0 26 15675.0 27 24354.0 28 35852.0 29 50095.0 30 67047.0 31 88140.0 32 116835.0 33 155172.0 34 213482.0 35 312149.0 36 553388.0 37 1304484.0 38 1433870.0 39 41051.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.532732456601885 19.973882320955248 14.319560619616306 24.173824602826564 2 14.681811879547052 20.43942103026408 42.02410431896899 22.85466277121988 3 18.349916380973973 25.78354166205629 30.20414965344283 25.662392303526904 4 12.545766908182559 17.896820038216806 38.08768729600503 31.4697257575956 5 13.602758366531795 37.44030035105087 35.281402975057915 13.675538307359423 6 30.466139375280292 37.29957289488029 18.46316223987889 13.771125489960523 7 26.881315178467798 32.32603606976577 22.538229227683566 18.254419524082866 8 24.472125260081594 36.811452758072974 20.820731015003552 17.895690966841883 9 25.435218185484594 16.906244700412856 20.85888143625332 36.79965567784924 10-11 24.51027802765113 26.55790090879129 28.446514388132204 20.485306675425374 12-13 25.327512889209647 23.96950962235121 28.52684149752502 22.17613599091413 14-15 22.437811091324512 25.406414380757493 26.10125369154554 26.054520836372458 16-17 22.07808747954687 28.594184198510618 26.766928957474207 22.560799364468302 18-19 22.104948087556323 27.561896821844734 28.459090808500914 21.874064282098033 20-21 22.8618834809825 26.80534698495356 28.384353779901495 21.948415754162443 22-23 22.64576031682474 26.820548711510572 28.271506572925496 22.262184398739187 24-25 22.49342822663484 26.96442517665435 28.367325848711705 22.174820747999103 26-27 22.447963448156646 27.13790208778905 28.29451846629586 22.119615997758444 28-29 22.214352061239246 26.966445946708205 28.383888818363907 22.435313173688638 30-31 22.698524045745767 26.964509268889515 28.289596598455546 22.047370086909172 32-33 22.53800216693569 26.943106882317025 28.41938993559858 22.099501015148707 34-35 22.264729342449083 27.059991050387953 28.57057915086008 22.104700456302883 36-37 22.518493700319432 27.060873328080937 28.183835551907887 22.23679741969174 38-39 22.27723357228052 27.035573866159517 28.362236088631064 22.324956472928896 40-41 22.49718232186372 26.889356036928056 28.334850596417677 22.27861104479055 42-43 22.44669603513996 26.94116653675827 28.208508030220514 22.403629397881257 44-45 22.3899668645445 27.20367401229548 27.977283360878907 22.429075762281112 46-47 22.67629334185937 27.04306905252431 27.48439074751616 22.796246858100165 48-49 22.50023947832328 27.12915292347035 27.60403486423128 22.76657273397509 50-51 22.43396631577127 27.37442875212514 27.540861066848194 22.6507438652554 52-53 22.568849948838775 27.32759392257843 27.57129310907864 22.53226301950416 54-55 22.550230816827085 27.274102794227957 27.431525803205158 22.744140585739807 56-57 22.712856132005935 27.419904081452145 27.19789588513361 22.66934390140831 58-59 22.39135017651792 27.5470021645343 27.483845170970493 22.577802487977284 60-61 22.791210791175885 27.641568116119075 27.279169694756117 22.28805139794892 62-63 22.430777823180396 27.77786936605711 27.216266816709243 22.57508599405325 64-65 22.437491112999943 27.609416998818624 27.19027462625042 22.76281726193101 66-67 22.53831752607084 27.581876062859507 27.2553748695286 22.624431541541053 68-69 22.576737583867367 27.58879787624674 27.189140936096667 22.645323603789226 70-71 22.49932729545524 27.376559698565483 27.10002376409044 23.024089241888834 72-73 22.647547757051402 27.389895659618386 26.952793524847735 23.009763058482477 74-75 22.4736874766869 27.565675377563775 27.169778082650648 22.790859063098676 76-77 22.629836344206893 27.304311181502243 27.098387476605396 22.967464997685465 78-79 22.554842701295776 27.307343998078053 26.866839335171388 23.27097396545478 80-81 22.7912186761759 27.53957652166478 26.87138809170278 22.797816710456537 82-83 22.845994880504588 27.336591194051103 26.95292773314717 22.86448619229714 84-85 22.741072201885824 27.273688201601704 26.889384286929328 23.095855309583143 86-87 22.566208703271958 27.559514620852166 26.977889948036438 22.896386727839438 88-89 22.815789964706102 27.511485946311364 26.96123699443536 22.711487094547174 90-91 22.871982440967663 27.542120590604558 26.90426429697819 22.681632671449584 92-93 22.746135389648874 27.252664569417213 26.988199106668915 23.013000934264998 94-95 22.707430298019574 27.56124013132742 27.057576416500993 22.67375315415201 96-97 23.036876897625373 27.408058322834655 27.112221830759044 22.44284294878093 98-99 23.822093934938998 29.442230374486478 27.383350097981037 19.35232559259349 100 22.69094800099136 30.479730049595798 21.191099768033126 25.638222181379717 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1185.0 1 1044.0 2 1302.0 3 1794.0 4 2365.5 5 3811.0 6 5038.5 7 5757.0 8 6230.0 9 6137.0 10 5607.0 11 5006.0 12 5282.5 13 6902.5 14 10909.0 15 16556.0 16 21350.5 17 24384.5 18 25329.0 19 24191.5 20 21908.0 21 19530.0 22 17935.5 23 18190.0 24 20535.5 25 24752.0 26 31022.0 27 38099.5 28 45276.5 29 54048.5 30 63033.0 31 72168.0 32 82766.0 33 92696.5 34 102466.0 35 112792.5 36 124180.0 37 134492.5 38 141237.5 39 147218.0 40 153873.5 41 159538.5 42 163385.5 43 167775.5 44 172560.5 45 176431.5 46 179413.5 47 181244.5 48 182822.0 49 186285.0 50 189753.0 51 187232.0 52 179581.0 53 171813.5 54 162976.5 55 152556.5 56 141155.0 57 128318.5 58 115265.0 59 100874.5 60 84774.5 61 68490.0 62 53797.0 63 41441.0 64 30809.5 65 22507.5 66 16823.5 67 12834.5 68 9748.0 69 7205.5 70 5144.0 71 3691.0 72 2671.0 73 1864.0 74 1248.0 75 807.0 76 514.5 77 325.0 78 193.5 79 119.5 80 93.5 81 70.0 82 47.0 83 33.5 84 26.5 85 23.0 86 16.0 87 11.0 88 9.0 89 9.0 90 9.0 91 8.0 92 6.5 93 3.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5806999248941722E-4 10-11 0.001433920646153999 12-13 1.0161642374319678E-4 14-15 0.0012645599399153378 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 76.0 20-21 272.0 22-23 615.0 24-25 1473.0 26-27 2067.0 28-29 3476.0 30-31 8537.0 32-33 10686.0 34-35 14717.0 36-37 21878.0 38-39 25070.0 40-41 27114.0 42-43 31863.0 44-45 37760.0 46-47 37467.0 48-49 34220.0 50-51 30073.0 52-53 28864.0 54-55 33020.0 56-57 35645.0 58-59 22948.0 60-61 38340.0 62-63 37938.0 64-65 39811.0 66-67 41870.0 68-69 36768.0 70-71 36105.0 72-73 34522.0 74-75 35291.0 76-77 35195.0 78-79 37532.0 80-81 38869.0 82-83 37126.0 84-85 37475.0 86-87 39671.0 88-89 42446.0 90-91 44561.0 92-93 46227.0 94-95 55729.0 96-97 162536.0 98-99 269741.0 100-101 2872824.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.5038263942741 #Duplication Level Percentage of deduplicated Percentage of total 1 90.95588925506412 79.58988342911952 2 6.6885344705130105 11.705447182797773 3 1.439570477638508 3.779037754728068 4 0.4369772559460786 1.5294872777020776 5 0.20164268318842485 0.8822253171697773 6 0.09790533142257651 0.5140254674325003 7 0.05282323680710206 0.32355647402066023 8 0.030789534589268214 0.2155361671567859 9 0.022366186842904152 0.17614142375430442 >10 0.07023325915830642 0.9580904959803245 >50 0.002355039606144978 0.132867207502132 >100 8.755195270780948E-4 0.16826683240058218 >500 3.7749696485817005E-5 0.02543497023553232 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.2581427498488174E-5 0.0 2 0.0 0.0 0.0 2.2581427498488174E-5 0.0 3 0.0 0.0 0.0 2.2581427498488174E-5 0.0 4 0.0 0.0 0.0 2.2581427498488174E-5 2.2581427498488174E-5 5 0.0 0.0 0.0 2.2581427498488174E-5 2.2581427498488174E-5 6 4.516285499697635E-5 0.0 0.0 2.2581427498488174E-5 2.2581427498488174E-5 7 4.516285499697635E-5 0.0 0.0 2.2581427498488174E-5 2.2581427498488174E-5 8 4.516285499697635E-5 0.0 0.0 2.2581427498488174E-5 2.2581427498488174E-5 9 4.516285499697635E-5 9.03257099939527E-5 0.0 4.516285499697635E-5 2.2581427498488174E-5 10-11 6.774428249546451E-5 9.03257099939527E-5 0.0 4.516285499697635E-5 2.2581427498488174E-5 12-13 6.774428249546451E-5 9.03257099939527E-5 0.0 4.516285499697635E-5 2.2581427498488174E-5 14-15 9.03257099939527E-5 1.580699924894172E-4 0.0 7.90349962447086E-5 4.516285499697635E-5 16-17 9.03257099939527E-5 1.806514199879054E-4 0.0 9.03257099939527E-5 6.774428249546451E-5 18-19 9.03257099939527E-5 1.806514199879054E-4 0.0 9.03257099939527E-5 6.774428249546451E-5 20-21 1.3548856499092903E-4 2.0323284748639356E-4 0.0 1.0161642374319678E-4 6.774428249546451E-5 22-23 1.4677927874017313E-4 2.0323284748639356E-4 0.0 1.1290713749244086E-4 7.90349962447086E-5 24-25 1.5806999248941722E-4 2.0323284748639356E-4 0.0 1.1290713749244086E-4 9.03257099939527E-5 26-27 1.5806999248941722E-4 2.0323284748639356E-4 0.0 1.580699924894172E-4 9.03257099939527E-5 28-29 1.5806999248941722E-4 2.0323284748639356E-4 0.0 6.661521112054012E-4 9.03257099939527E-5 30-31 1.5806999248941722E-4 3.048492712295904E-4 0.0 0.0023710498873412583 9.03257099939527E-5 32-33 2.0323284748639356E-4 3.1613998497883445E-4 0.0 0.006108276138341051 1.1290713749244086E-4 34-35 2.2581427498488172E-4 3.9517498122354305E-4 0.0 0.0102180959430659 1.1290713749244086E-4 36-37 2.2581427498488172E-4 4.629192637190076E-4 0.0 0.016902198482618397 1.1290713749244086E-4 38-39 2.2581427498488172E-4 4.855006912174957E-4 0.0 0.035306061893886256 1.2419785124168493E-4 40-41 2.483957024833699E-4 5.871171149606925E-4 0.0 0.05605839376499689 1.3548856499092903E-4 42-43 2.483957024833699E-4 6.54861397456157E-4 0.0 0.06832010889667597 1.3548856499092903E-4 44-45 2.483957024833699E-4 7.79059248697842E-4 0.0 0.083539991030657 1.3548856499092903E-4 46-47 2.483957024833699E-4 8.806756724410388E-4 0.0 0.09883890816088274 1.5806999248941722E-4 48-49 2.483957024833699E-4 9.032570999395269E-4 0.0 0.11382168530612964 1.5806999248941722E-4 50-51 2.7097712998185806E-4 0.0010048735236827238 0.0 0.12835283390140678 1.5806999248941722E-4 52-53 2.7097712998185806E-4 0.0010161642374319677 0.0 0.1648557114527129 1.6936070623866132E-4 54-55 2.8226784373110213E-4 0.0010161642374319677 0.0 0.2102895435796711 1.9194213373714946E-4 56-57 2.9355855748034625E-4 0.001038745664930456 0.0 0.2563669463903362 2.1452356123563765E-4 58-59 2.9355855748034625E-4 0.0010500363786797 0.0 0.44468476101397836 2.2581427498488172E-4 60-61 3.3872141247732264E-4 0.0010951992336766764 0.0 0.6117421616477938 2.2581427498488172E-4 62-63 3.613028399758108E-4 0.0011290713749244087 0.0 0.6188666020235669 2.2581427498488172E-4 64-65 3.613028399758108E-4 0.001174234229921385 0.0 0.62479422674192 2.2581427498488172E-4 66-67 3.613028399758108E-4 0.001174234229921385 0.0 0.6301460250590617 2.2581427498488172E-4 68-69 3.83884267474299E-4 0.0011968156574198733 0.0 0.6355091140899527 2.2581427498488172E-4 70-71 3.83884267474299E-4 0.0011968156574198733 0.0 0.640149597440892 2.59686416232614E-4 72-73 4.7420997746825164E-4 0.0011968156574198733 0.0 0.644225545104369 3.387214124773226E-4 74-75 4.967914049667398E-4 0.0012419785124168495 0.0 0.6469804792591847 3.387214124773226E-4 76-77 4.967914049667398E-4 0.0012645599399153378 0.0 0.6501870419639699 3.387214124773226E-4 78-79 4.967914049667398E-4 0.0012645599399153378 0.0 0.6522193704388339 3.387214124773226E-4 80-81 5.19372832465228E-4 0.0012645599399153378 0.0 0.652829068981293 3.5001212622656666E-4 82-83 5.19372832465228E-4 0.0012645599399153378 0.0 0.6533258603862598 3.613028399758108E-4 84-85 5.19372832465228E-4 0.0012645599399153378 0.0 0.6537097446537341 3.613028399758108E-4 86-87 5.306635462144721E-4 0.0013548856499092903 0.0 0.6538226517912266 3.613028399758108E-4 88 5.419542599637161E-4 0.0014000485049062668 0.0 0.653845233218725 3.613028399758108E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5630 0.0 50.44816 1 GTATCAA 10180 0.0 36.94879 1 TCAACGC 12350 0.0 29.904076 4 ATCAACG 12445 0.0 29.641535 3 CAACGCA 12660 0.0 29.23986 5 TATCAAC 12780 0.0 29.231607 2 AACGCAG 13045 0.0 28.44228 6 ACGCAGA 14980 0.0 24.683199 7 CGCAGAG 15420 0.0 24.006536 8 CTTATAC 6545 0.0 23.45699 1 GTGGTAT 2785 0.0 21.284773 1 TATACAC 8310 0.0 20.835527 3 GCAGAGT 18095 0.0 20.504766 9 GTACATG 13780 0.0 20.363674 1 TACATGG 13685 0.0 20.037598 2 TGGTATC 2840 0.0 19.671272 2 ACATGGG 13815 0.0 19.540346 3 GAGTACT 10270 0.0 19.537706 12-13 TTATACA 8345 0.0 18.908403 2 CAGAGTA 17385 0.0 18.521086 10-11 >>END_MODULE