##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139555_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8477946 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6268346130065 33.0 33.0 33.0 33.0 33.0 2 32.622148218448196 33.0 33.0 33.0 33.0 33.0 3 32.61706821440004 33.0 33.0 33.0 33.0 33.0 4 36.52712461249458 37.0 37.0 37.0 37.0 37.0 5 36.54569892282871 37.0 37.0 37.0 37.0 37.0 6 36.53891602989687 37.0 37.0 37.0 37.0 37.0 7 36.507282660210386 37.0 37.0 37.0 37.0 37.0 8 36.508246101119305 37.0 37.0 37.0 37.0 37.0 9 36.54213261089419 37.0 37.0 37.0 37.0 37.0 10-11 36.477315260087764 37.0 37.0 37.0 37.0 37.0 12-13 36.472750888009905 37.0 37.0 37.0 37.0 37.0 14-15 38.512323798712565 40.0 37.0 40.0 37.0 40.0 16-17 38.449530346147526 40.0 37.0 40.0 37.0 40.0 18-19 38.46058709267551 40.0 37.0 40.0 37.0 40.0 20-21 38.45943628456837 40.0 37.0 40.0 37.0 40.0 22-23 38.46590644630702 40.0 37.0 40.0 37.0 40.0 24-25 38.44192410372693 40.0 37.0 40.0 37.0 40.0 26-27 38.324422007939134 40.0 37.0 40.0 37.0 40.0 28-29 38.27569151730999 40.0 37.0 40.0 37.0 40.0 30-31 38.210339147630876 40.0 37.0 40.0 37.0 40.0 32-33 38.137794033193515 40.0 37.0 40.0 37.0 40.0 34-35 38.09533179852437 40.0 37.0 40.0 33.0 40.0 36-37 38.04756515558225 40.0 37.0 40.0 33.0 40.0 38-39 37.990296837748005 40.0 37.0 40.0 33.0 40.0 40-41 37.935558007592334 40.0 37.0 40.0 33.0 40.0 42-43 37.872662381110445 40.0 37.0 40.0 33.0 40.0 44-45 37.82512074849954 40.0 37.0 40.0 33.0 40.0 46-47 37.759000228253264 40.0 37.0 40.0 33.0 40.0 48-49 37.741794091683154 40.0 37.0 40.0 33.0 40.0 50-51 37.6661399544321 40.0 37.0 40.0 33.0 40.0 52-53 37.538205644148235 40.0 37.0 40.0 33.0 40.0 54-55 37.37582137471147 40.0 37.0 40.0 33.0 40.0 56-57 37.283108225181415 40.0 37.0 40.0 33.0 40.0 58-59 37.1449893402386 37.0 37.0 40.0 33.0 40.0 60-61 36.993131533791924 37.0 37.0 40.0 33.0 40.0 62-63 36.79848459346768 37.0 37.0 40.0 33.0 40.0 64-65 36.61403736223306 37.0 37.0 40.0 33.0 40.0 66-67 36.41384635945143 37.0 37.0 40.0 33.0 40.0 68-69 36.132536647974625 37.0 37.0 40.0 33.0 40.0 70-71 35.904442976005384 37.0 37.0 37.0 33.0 40.0 72-73 35.58378023855401 37.0 33.0 37.0 33.0 40.0 74-75 35.49438185483382 37.0 33.0 37.0 33.0 40.0 76-77 33.816616802956474 35.0 33.0 37.0 27.0 37.0 78-79 35.06391306155561 37.0 33.0 37.0 33.0 37.0 80-81 35.12019174718881 37.0 33.0 37.0 33.0 37.0 82-83 34.971350620150204 37.0 33.0 37.0 33.0 37.0 84-85 34.84654662911038 37.0 33.0 37.0 33.0 37.0 86-87 34.74614757676807 37.0 33.0 37.0 33.0 37.0 88-89 34.63511883235956 37.0 33.0 37.0 33.0 37.0 90-91 34.54265379076477 37.0 33.0 37.0 33.0 37.0 92-93 34.511238718056504 37.0 33.0 37.0 33.0 37.0 94-95 34.52493878029202 37.0 33.0 37.0 33.0 37.0 96-97 34.51389808107277 37.0 33.0 37.0 33.0 37.0 98-99 34.51538830883239 37.0 33.0 37.0 33.0 37.0 100 34.509787364229915 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 3.0 19 18.0 20 85.0 21 340.0 22 1269.0 23 3716.0 24 8517.0 25 16849.0 26 29194.0 27 45739.0 28 66642.0 29 92548.0 30 124438.0 31 165772.0 32 217736.0 33 291265.0 34 400419.0 35 585926.0 36 1039919.0 37 2495411.0 38 2803729.0 39 88410.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18842630042701 19.7924119828081 14.221687658779613 23.797474057985273 2 14.848749921266307 20.72326245059829 41.722169497187174 22.705818130948227 3 18.47952322413943 25.890610768221457 30.04626356431145 25.583602443327663 4 12.651590373422996 17.71859599011364 38.44156355796557 31.188250078497788 5 13.60859104316069 37.53017535143536 35.17903982875097 13.682193776652976 6 30.40905190950733 37.410535523580826 18.524050518840294 13.65636204807155 7 26.93280896103844 32.477206153471606 22.76273050099635 17.827254384493603 8 24.61885225501554 36.69558640736801 20.76238749338578 17.923173844230668 9 25.840186215003598 16.831136613107283 20.99178078830924 36.336896383579884 10-11 24.573506838977032 26.586876340485855 28.465953974160524 20.373662846376593 12-13 25.362917282702423 24.20928668853796 28.67463350873188 21.753162520027736 14-15 22.4488136129014 25.494719173751808 26.51530932407311 25.541157889273684 16-17 21.868846534290263 28.558379588640925 27.151912739241318 22.42086113782749 18-19 21.900835414615756 27.652529280087418 29.035092934066814 21.411542371230013 20-21 22.781097108029627 26.755873278092313 28.999401075586857 21.463628538291204 22-23 22.491846365140695 26.68094640262426 28.849867834290183 21.97733939794486 24-25 22.218320638338454 26.858552618964733 28.942075107338294 21.98105163535852 26-27 22.11826489766297 26.950861146122566 28.918100808565494 22.012773147648968 28-29 22.074742293911 27.015874905278775 28.939750511054736 21.969632289755488 30-31 22.34084294481559 26.91432555063647 28.783654078612887 21.96117742593505 32-33 22.100393057708192 27.116414801905847 28.722356604723032 22.06083553566293 34-35 22.273113062386436 27.113356643859245 28.69914518633997 21.914385107414354 36-37 22.274145466491905 27.033165046283365 28.630420038584823 22.06226944863991 38-39 22.11890895432822 27.18327377980015 28.688121768387365 22.009695497484266 40-41 22.439092108756835 27.04340476652013 28.494668709976413 22.02283441474663 42-43 22.242263715861778 27.150539969305658 28.316565353393404 22.290630961439163 44-45 22.315865403695334 27.293077632756773 28.134463772049777 22.25659319149812 46-47 22.41242829837374 27.330302853422978 27.82202414754458 22.435244700658696 48-49 22.340313621951317 27.434520876288627 27.767015599986074 22.458149901773982 50-51 22.354328611921897 27.541588381353392 27.620492805719415 22.483590201005292 52-53 22.557011353006672 27.44518413905569 27.476554647571565 22.521249860366073 54-55 22.54750015156398 27.33662838745497 27.56667379283278 22.54919766814827 56-57 22.491465370965766 27.464260989711498 27.52595276428089 22.51832087504184 58-59 22.460495062677044 27.498309793189225 27.53060979445996 22.51058534967377 60-61 22.559831584419232 27.452912413791708 27.543699101226178 22.443556900562886 62-63 22.494609452014007 27.534209994581442 27.472419203070135 22.498761350334412 64-65 22.496283443196326 27.477047728098896 27.425391409752965 22.601277418951817 66-67 22.551690474167522 27.547869100534417 27.24871090250605 22.65172952279201 68-69 22.525495205625802 27.521518286650686 27.339584737622197 22.613401770101316 70-71 22.530351366919227 27.30409323616082 27.43221199843115 22.733343398488802 72-73 22.642761119676642 27.309907885806297 27.253373066972493 22.793957927544568 74-75 22.426198887739666 27.511574369357366 27.2797454217303 22.782481321172664 76-77 22.633686082003596 27.39117204576655 27.22862107745396 22.7465207947759 78-79 22.597810763408866 27.367007286151008 27.18376396178125 22.851417988658877 80-81 22.601512080835956 27.438568122691276 27.169354490966324 22.790565305506448 82-83 22.689982157861223 27.3503726388375 27.265252645440754 22.694392557860525 84-85 22.742496285846293 27.37312738094897 27.183587850815762 22.700788482388973 86-87 22.61823889379924 27.370542927894782 27.31195291885414 22.699265259451845 88-89 22.671762587089294 27.307485850079765 27.300480976280987 22.72027058654995 90-91 22.740200867649556 27.35264083313852 27.25339494350835 22.653763355703575 92-93 22.799609117221912 27.236103944309242 27.33404080089899 22.630246137569863 94-95 22.624457326957717 27.266338170413242 27.411724793370944 22.697479709258094 96-97 22.6871791544396 27.353613239205316 27.47531121280221 22.483896393552868 98-99 23.82547304187133 29.28130440594881 27.59905794753171 19.294164604648152 100 22.670484501144735 30.296427801906205 21.517558320322394 25.515529376626674 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1944.0 1 1707.5 2 2327.5 3 3437.0 4 4639.5 5 7504.0 6 10143.0 7 12384.0 8 14362.0 9 14735.0 10 13480.5 11 11903.5 12 12524.5 13 15912.5 14 24285.5 15 36372.0 16 46409.5 17 52283.0 18 53612.5 19 50723.0 20 45683.5 21 40520.5 22 37262.5 23 37802.5 24 42664.5 25 52060.5 26 64991.0 27 79530.0 28 94949.5 29 112158.0 30 129939.5 31 147260.0 32 166523.5 33 186304.5 34 205815.5 35 224356.5 36 243527.0 37 260619.0 38 273550.0 39 285831.0 40 297214.0 41 306709.5 42 312502.0 43 318362.5 44 325237.0 45 333406.0 46 338199.0 47 338541.0 48 339675.5 49 340225.0 50 339076.0 51 334340.0 52 325380.0 53 313447.5 54 300060.5 55 284063.5 56 265290.0 57 242447.5 58 217575.0 59 191624.0 60 162616.5 61 133294.5 62 106125.5 63 82964.5 64 62909.0 65 46829.0 66 35489.0 67 27098.5 68 20608.5 69 15162.0 70 10877.0 71 7725.5 72 5353.5 73 3731.5 74 2464.5 75 1592.5 76 1058.5 77 652.5 78 395.5 79 260.0 80 194.5 81 137.0 82 97.0 83 70.0 84 48.5 85 32.0 86 17.0 87 11.0 88 8.0 89 7.0 90 5.0 91 3.0 92 3.0 93 2.5 94 1.5 95 1.0 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 4.7181239418132646E-5 10-11 0.0016867293091982422 12-13 1.8282730274526401E-4 14-15 0.0012503028445805151 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 526.0 22-23 1116.0 24-25 3120.0 26-27 3276.0 28-29 7012.0 30-31 17021.0 32-33 21185.0 34-35 30261.0 36-37 43384.0 38-39 50192.0 40-41 53886.0 42-43 64196.0 44-45 77118.0 46-47 74623.0 48-49 67329.0 50-51 58782.0 52-53 55393.0 54-55 58725.0 56-57 62683.0 58-59 63566.0 60-61 61987.0 62-63 62570.0 64-65 66158.0 66-67 70568.0 68-69 72536.0 70-71 71845.0 72-73 68551.0 74-75 70038.0 76-77 69059.0 78-79 74634.0 80-81 76500.0 82-83 73624.0 84-85 74722.0 86-87 78371.0 88-89 84709.0 90-91 89181.0 92-93 93243.0 94-95 105579.0 96-97 283394.0 98-99 512787.0 100-101 5504342.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.55457375439978 #Duplication Level Percentage of deduplicated Percentage of total 1 89.52321815151167 75.69597551923215 2 7.3209164848906925 12.380339457429827 3 1.7636769548057214 4.4738085946216675 4 0.6328318160146892 2.1403529784537914 5 0.2925626741754935 1.2368756105678098 6 0.14748241533990233 0.7482187659200876 7 0.09123642830117444 0.5400120114115763 8 0.057688802961441805 0.3902281715845014 9 0.036835328772381846 0.28031359711067333 >10 0.12896157007300982 1.7158816310848277 >50 0.003363292998073873 0.19423084611615557 >100 0.0011543002479132542 0.1489366524144263 >500 4.7853301521485464E-5 0.029759905465888376 >1k 2.3926606359992444E-5 0.025066258586743467 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1795309854533161E-5 0.0 0.0 0.0 3 0.0 1.1795309854533161E-5 0.0 1.1795309854533161E-5 0.0 4 0.0 1.1795309854533161E-5 0.0 2.3590619709066323E-5 0.0 5 0.0 1.1795309854533161E-5 0.0 2.3590619709066323E-5 0.0 6 4.7181239418132646E-5 1.1795309854533161E-5 0.0 2.3590619709066323E-5 0.0 7 4.7181239418132646E-5 1.1795309854533161E-5 0.0 3.538592956359948E-5 0.0 8 4.7181239418132646E-5 1.1795309854533161E-5 0.0 3.538592956359948E-5 0.0 9 4.7181239418132646E-5 3.538592956359948E-5 0.0 5.897654927266581E-5 1.1795309854533161E-5 10-11 5.307889434539923E-5 3.538592956359948E-5 0.0 1.533390281089311E-4 1.1795309854533161E-5 12-13 5.897654927266581E-5 3.538592956359948E-5 0.0 1.592366830361977E-4 1.1795309854533161E-5 14-15 5.897654927266581E-5 8.256716898173213E-5 0.0 2.0641792245433034E-4 1.1795309854533161E-5 16-17 8.256716898173213E-5 8.256716898173213E-5 0.0 2.2411088723613007E-4 1.1795309854533161E-5 18-19 8.256716898173213E-5 8.256716898173213E-5 0.0 2.477015069451964E-4 2.3590619709066323E-5 20-21 8.256716898173213E-5 8.256716898173213E-5 0.0 3.243710209996619E-4 2.3590619709066323E-5 22-23 8.256716898173213E-5 1.0026013376353187E-4 0.0 5.248912885267257E-4 2.94882746363329E-5 24-25 8.256716898173213E-5 1.1205544361806504E-4 0.0 0.0011559403657442498 3.538592956359948E-5 26-27 8.256716898173213E-5 1.1795309854533162E-4 0.0 0.0031847336607239533 3.538592956359948E-5 28-29 8.256716898173213E-5 1.1795309854533162E-4 0.0 0.011494529453242565 3.538592956359948E-5 30-31 8.256716898173213E-5 1.2974840839986477E-4 0.0 0.014372585057748657 3.538592956359948E-5 32-33 8.256716898173213E-5 1.2974840839986477E-4 0.0 0.020718461759487498 3.538592956359948E-5 34-35 8.256716898173213E-5 1.6513433796346426E-4 0.0 0.02741230010193507 3.538592956359948E-5 36-37 8.256716898173213E-5 2.0052026752706375E-4 0.0 0.037845251668269644 3.538592956359948E-5 38-39 8.256716898173213E-5 2.0052026752706375E-4 0.0 0.061943069701080905 3.538592956359948E-5 40-41 8.256716898173213E-5 2.123155773815969E-4 0.0 0.08674860632516414 3.538592956359948E-5 42-43 8.256716898173213E-5 2.2411088723613007E-4 0.0 0.10317357529760157 4.1283584490866064E-5 44-45 8.256716898173213E-5 2.6539447172699613E-4 0.0 0.12310175129683534 4.7181239418132646E-5 46-47 8.256716898173213E-5 2.9488274636332905E-4 0.0 0.14322454990866892 5.897654927266581E-5 48-49 8.256716898173213E-5 2.9488274636332905E-4 0.0 0.1623211565631581 7.077185912719897E-5 50-51 8.256716898173213E-5 3.302686759269285E-4 0.0 0.1794715370916493 7.077185912719897E-5 52-53 8.256716898173213E-5 3.302686759269285E-4 0.0 0.2172578122106463 7.077185912719897E-5 54-55 8.256716898173213E-5 3.302686759269285E-4 0.0 0.2616199725735455 7.077185912719897E-5 56-57 8.256716898173213E-5 3.302686759269285E-4 0.0 0.3071026873726254 7.666951405446555E-5 58-59 8.256716898173213E-5 3.302686759269285E-4 0.0 0.339858262838664 8.256716898173213E-5 60-61 9.436247883626529E-5 3.4206398578146165E-4 0.0 0.36545408522300094 8.256716898173213E-5 62-63 1.1795309854533162E-4 3.6565460549052803E-4 0.0 0.38389015452563624 1.0615778869079845E-4 64-65 1.238507534725982E-4 4.010405350541275E-4 0.0 0.3890977838264127 1.0615778869079845E-4 66-67 1.3564606332713136E-4 4.128358449086607E-4 0.0 0.39483030441571576 1.0615778869079845E-4 68-69 1.4154371825439793E-4 4.128358449086607E-4 0.0 0.40081642416689134 1.0615778869079845E-4 70-71 1.474413731816645E-4 4.187334998359272E-4 0.0 0.40582943085506795 1.0615778869079845E-4 72-73 1.6513433796346426E-4 4.246311547631938E-4 0.0 0.40992830102951827 1.0615778869079845E-4 74-75 1.6513433796346426E-4 4.246311547631938E-4 0.0 0.4130776487606786 1.0615778869079845E-4 76-77 1.7103199289073082E-4 4.305288096904604E-4 0.0 0.41616801994256625 1.0615778869079845E-4 78-79 1.7692964781799742E-4 4.36426464617727E-4 0.0 0.41823219916710963 1.0615778869079845E-4 80-81 1.7692964781799742E-4 4.36426464617727E-4 0.0 0.41899299665272693 1.0615778869079845E-4 82-83 1.7692964781799742E-4 4.36426464617727E-4 0.0 0.41938224187792655 1.0615778869079845E-4 84-85 1.8282730274526401E-4 4.36426464617727E-4 0.0 0.4195650691806718 1.0615778869079845E-4 86-87 1.9462261259979715E-4 4.4822177447226014E-4 0.0 0.4196181480750172 1.0615778869079845E-4 88 2.0052026752706375E-4 4.600170843267933E-4 0.0 0.41962994338487175 1.0615778869079845E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11485 0.0 52.549004 1 GTATCAA 21635 0.0 37.962696 1 TCAACGC 26540 0.0 30.288166 4 ATCAACG 26980 0.0 29.857407 3 CAACGCA 27115 0.0 29.679066 5 TATCAAC 27550 0.0 29.440788 2 AACGCAG 27975 0.0 28.751442 6 ACGCAGA 32085 0.0 25.108318 7 GTGGTAT 5330 0.0 24.78944 1 CGCAGAG 32895 0.0 24.451326 8 TGGTATC 5245 0.0 23.24089 2 GTACATG 28225 0.0 22.545406 1 TACATGG 28275 0.0 21.902576 2 GCAGAGT 37470 0.0 21.295618 9 ACATGGG 28485 0.0 21.277256 3 GAGTACT 22475 0.0 19.827448 12-13 CATGGGG 20960 0.0 19.135094 4 CAGAGTA 36725 0.0 18.947828 10-11 AGAGTAC 34310 0.0 18.927351 10-11 GTACTTT 25035 0.0 17.851664 14-15 >>END_MODULE