##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139553_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9671205 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59928075146789 33.0 33.0 33.0 33.0 33.0 2 32.5985806318861 33.0 33.0 33.0 33.0 33.0 3 32.595351354872534 33.0 33.0 33.0 33.0 33.0 4 36.501705423471016 37.0 37.0 37.0 37.0 37.0 5 36.51975064120759 37.0 37.0 37.0 37.0 37.0 6 36.51486645149183 37.0 37.0 37.0 37.0 37.0 7 36.48419281775125 37.0 37.0 37.0 37.0 37.0 8 36.485313464040935 37.0 37.0 37.0 37.0 37.0 9 36.52080335387369 37.0 37.0 37.0 37.0 37.0 10-11 36.45352590499323 37.0 37.0 37.0 37.0 37.0 12-13 36.449568693870106 37.0 37.0 37.0 37.0 37.0 14-15 38.46111399768695 40.0 37.0 40.0 37.0 40.0 16-17 38.39447493874859 40.0 37.0 40.0 37.0 40.0 18-19 38.410139636167365 40.0 37.0 40.0 37.0 40.0 20-21 38.4072867342489 40.0 37.0 40.0 37.0 40.0 22-23 38.41196443015099 40.0 37.0 40.0 37.0 40.0 24-25 38.38890722580275 40.0 37.0 40.0 37.0 40.0 26-27 38.270621199367156 40.0 37.0 40.0 37.0 40.0 28-29 38.219880081021856 40.0 37.0 40.0 37.0 40.0 30-31 38.15364151767372 40.0 37.0 40.0 37.0 40.0 32-33 38.080538269383325 40.0 37.0 40.0 33.0 40.0 34-35 38.03639425585153 40.0 37.0 40.0 33.0 40.0 36-37 37.99233115154574 40.0 37.0 40.0 33.0 40.0 38-39 37.932484413909535 40.0 37.0 40.0 33.0 40.0 40-41 37.87756691105365 40.0 37.0 40.0 33.0 40.0 42-43 37.813900241715146 40.0 37.0 40.0 33.0 40.0 44-45 37.764969561600694 40.0 37.0 40.0 33.0 40.0 46-47 37.69860930193153 40.0 37.0 40.0 33.0 40.0 48-49 37.681116068163846 40.0 37.0 40.0 33.0 40.0 50-51 37.604065510640254 40.0 37.0 40.0 33.0 40.0 52-53 37.474957773550464 40.0 37.0 40.0 33.0 40.0 54-55 37.30904772159052 40.0 37.0 40.0 33.0 40.0 56-57 37.21508620697089 38.5 37.0 40.0 33.0 40.0 58-59 37.074680489891044 37.0 37.0 40.0 33.0 40.0 60-61 36.92481318146466 37.0 37.0 40.0 33.0 40.0 62-63 36.724173203918944 37.0 37.0 40.0 33.0 40.0 64-65 36.54089079101338 37.0 37.0 40.0 33.0 40.0 66-67 36.33518941108896 37.0 37.0 40.0 33.0 40.0 68-69 36.0522539212827 37.0 37.0 40.0 33.0 40.0 70-71 35.82033802193922 37.0 35.0 37.0 33.0 40.0 72-73 35.49904155501364 37.0 33.0 37.0 33.0 40.0 74-75 35.4081148415795 37.0 33.0 37.0 33.0 40.0 76-77 33.726527633997776 35.0 33.0 37.0 27.0 37.0 78-79 34.981859045280714 37.0 33.0 37.0 33.0 37.0 80-81 35.03512011965222 37.0 33.0 37.0 33.0 37.0 82-83 34.887234287132785 37.0 33.0 37.0 33.0 37.0 84-85 34.762759947229036 37.0 33.0 37.0 33.0 37.0 86-87 34.66289284034008 37.0 33.0 37.0 33.0 37.0 88-89 34.54756928347197 37.0 33.0 37.0 33.0 37.0 90-91 34.452395405133736 37.0 33.0 37.0 33.0 37.0 92-93 34.41809186722906 37.0 33.0 37.0 33.0 37.0 94-95 34.424004978964916 37.0 33.0 37.0 33.0 37.0 96-97 34.41602881933292 37.0 33.0 37.0 33.0 37.0 98-99 34.42934268321925 37.0 33.0 37.0 33.0 37.0 100 34.42562811596298 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 13.0 20 87.0 21 379.0 22 1538.0 23 4421.0 24 10484.0 25 20152.0 26 35109.0 27 54943.0 28 80262.0 29 111625.0 30 149767.0 31 197049.0 32 258993.0 33 344780.0 34 473546.0 35 691460.0 36 1223764.0 37 2883834.0 38 3043396.0 39 85600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18125869527117 19.97997147201409 14.267529227226596 23.571240605488146 2 14.924562140912121 20.90489240999441 41.470261461730985 22.700283987362486 3 18.419142185487743 26.10649862142308 30.08798800149516 25.386371191594016 4 12.682432023724036 17.873046843697345 38.50932743127666 30.935193701301955 5 13.5933526380632 37.60437298144337 35.14061587982056 13.661658500672875 6 30.185080349346332 37.44535453441428 18.658967522661342 13.71059759357805 7 26.851162807530187 32.56100971905776 22.80238088221685 17.785446591195203 8 24.697511840561752 36.388464519157644 20.87522702703541 18.038796613245196 9 25.888510100618433 16.849963654938016 21.056995054383172 36.20453119006037 10-11 24.442534390027138 26.691308953685976 28.460409397329865 20.40574725895702 12-13 25.33970766554619 24.319046594403186 28.64521331051227 21.696032429538352 14-15 22.4965912469664 25.537059878192238 26.463876730763236 25.502472144078126 16-17 21.830723265611677 28.6434989228333 27.14747541800634 22.378302393548687 18-19 21.907911165154704 27.703445434152208 29.01076959903135 21.377873801661735 20-21 22.802788928867713 26.81595081684297 28.960455086484238 21.420805167805078 22-23 22.5172645824076 26.689072887710747 28.849222939969067 21.944439589912587 24-25 22.19804925555261 26.866476068607852 28.919175170041644 22.016299505797893 26-27 22.085487825607718 26.98780848523799 28.925705722849465 22.000997966304826 28-29 22.092546418631418 26.934941981238996 28.96636971576966 22.00614188435993 30-31 22.312502590244105 26.938155331758466 28.774995855609433 21.974346222387997 32-33 22.09633086739576 27.1304209347703 28.7097432070705 22.06350499076344 34-35 22.2387881207641 27.087063826350295 28.70771801448746 21.966430038398144 36-37 22.260059194700315 27.005428748943277 28.636988878990895 22.09752317736551 38-39 22.10165497627038 27.183185903469802 28.735854473503807 21.97930464675601 40-41 22.378664081216556 27.05170782308962 28.525658302758792 22.043969792935034 42-43 22.219693005115342 27.148648306144512 28.345446211017578 22.286212477722568 44-45 22.31564143034111 27.230873790879535 28.1882138838441 22.265270894935256 46-47 22.4422 27.262135135135136 27.843281081081084 22.452383783783784 48-49 22.357493127149827 27.38141654603438 27.802768858580645 22.458321468235145 50-51 22.382529057514635 27.52270428775075 27.62419543151351 22.470571223221103 52-53 22.558549655154096 27.410141966728347 27.481130864372417 22.550177513745144 54-55 22.55564056464306 27.311676182002337 27.57398993773168 22.55869331562292 56-57 22.494526765470603 27.462369145294417 27.559160453660507 22.483943635574466 58-59 22.405432594437563 27.38878457611063 27.52532768200196 22.680455147449845 60-61 22.575576741499372 27.371872514890132 27.620260639643597 22.4322901039669 62-63 22.414143615731554 27.454463448494188 27.584453347776783 22.546939587997475 64-65 22.418676194823846 27.34370291656651 27.560265063061927 22.677355825547718 66-67 22.4797417783143 27.420791909417208 27.551210607767906 22.54825570450059 68-69 22.444605006236756 27.578462527980776 27.44974274850758 22.527189717274897 70-71 22.41969225759334 27.368734541140828 27.382014236688086 22.82955896457775 72-73 22.55241825201373 27.356804228800797 27.20044287209888 22.890334647086597 74-75 22.333183100260477 27.591249966371368 27.39716818214657 22.678398751221586 76-77 22.557805497742613 27.26046292494546 27.33529303587408 22.846438541437845 78-79 22.459449616420745 27.254993069619555 27.090869186010497 23.194688127949203 80-81 22.678337238699957 27.492753382185757 27.071231632616392 22.757677746497894 82-83 22.73432667621182 27.243608525729705 27.189760473414704 22.832304324643772 84-85 22.562604733970705 27.21920260761391 27.142866501557982 23.075326156857404 86-87 22.478168390719276 27.417396991009912 27.252506993438413 22.851927624832403 88-89 22.765584718758404 27.370347522185963 27.212306898056248 22.65176086099939 90-91 22.80277331685778 27.38221090026048 27.188261645208673 22.626754137673068 92-93 22.64761130994301 27.10113781241217 27.24669727692326 23.004553600721568 94-95 22.674744115363286 27.312063736543617 27.33058628508635 22.682605863006742 96-97 23.020010437776318 27.194367609469307 27.352869479622733 22.432752473131643 98-99 23.77730572337026 29.209947452494717 27.669794662857438 19.342952161277584 100 22.70647609026552 30.194255250724066 21.517340826109503 25.58192783290091 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2663.0 1 2257.5 2 2824.0 3 4031.0 4 5216.5 5 8238.0 6 11013.5 7 13591.5 8 16170.0 9 16765.0 10 15176.0 11 13191.0 12 13852.0 13 18047.0 14 28342.0 15 42443.5 16 53799.0 17 60570.5 18 61776.5 19 57731.5 20 51242.0 21 44277.0 22 39472.5 23 39471.0 24 44853.5 25 55674.0 26 71044.5 27 87852.5 28 104220.5 29 123327.5 30 142925.5 31 162122.5 32 185517.0 33 209490.5 34 231433.0 35 252546.5 36 276788.0 37 297600.0 38 311997.0 39 325466.5 40 338383.0 41 350407.5 42 357521.0 43 366097.5 44 376825.5 45 384303.5 46 387887.0 47 387133.0 48 387595.5 49 390012.5 50 388891.5 51 384061.0 52 376320.0 53 360988.0 54 340031.5 55 320327.0 56 297691.5 57 270461.0 58 243620.0 59 215273.5 60 182811.5 61 149048.0 62 118014.0 63 91036.5 64 67558.5 65 49024.5 66 36174.5 67 27374.5 68 20870.5 69 15058.5 70 10425.5 71 7242.0 72 4745.5 73 2999.0 74 1857.5 75 1118.5 76 739.5 77 502.0 78 344.5 79 242.0 80 170.5 81 122.5 82 98.0 83 78.5 84 60.0 85 41.0 86 26.5 87 18.5 88 13.0 89 7.5 90 3.0 91 2.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5509959720634605E-4 10-11 0.001654395703534358 12-13 2.274794092359742E-4 14-15 0.0015148060660486466 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 147.0 20-21 562.0 22-23 1254.0 24-25 2727.0 26-27 3448.0 28-29 7420.0 30-31 17821.0 32-33 22874.0 34-35 31775.0 36-37 45877.0 38-39 52675.0 40-41 58145.0 42-43 70067.0 44-45 85126.0 46-47 83301.0 48-49 73954.0 50-51 63495.0 52-53 59488.0 54-55 63513.0 56-57 68076.0 58-59 41050.0 60-61 70423.0 62-63 68451.0 64-65 73592.0 66-67 78328.0 68-69 80927.0 70-71 80137.0 72-73 76749.0 74-75 78852.0 76-77 77766.0 78-79 83879.0 80-81 84897.0 82-83 82449.0 84-85 83842.0 86-87 88478.0 88-89 96377.0 90-91 101603.0 92-93 106264.0 94-95 120967.0 96-97 355107.0 98-99 592196.0 100-101 6337126.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.61327920403903 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4997599474097 75.72868177124647 2 7.346156045973351 12.431647051887653 3 1.7574521935601348 4.461113794243636 4 0.6348220890715375 2.148575146700053 5 0.29163391794788857 1.2338051062346254 6 0.1531083620099561 0.7773000349932899 7 0.08967406233077044 0.5311331531347715 8 0.06139147818189432 0.41556274273226357 9 0.037583802880387734 0.28620799260010327 >10 0.124231287237173 1.6001200988967155 >50 0.0030978809143679077 0.17215442190066982 >100 9.641740517740138E-4 0.11987239350570583 >500 8.317330775167622E-5 0.04428364841161891 >1k 4.158512343341829E-5 0.049542643512504994 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0679946294179473E-5 0.0 1.0339973147089737E-5 0.0 3 0.0 2.0679946294179473E-5 0.0 1.0339973147089737E-5 0.0 4 0.0 4.1359892588358946E-5 0.0 3.101991944126921E-5 0.0 5 0.0 5.169986573544868E-5 0.0 3.101991944126921E-5 0.0 6 8.271978517671789E-5 5.169986573544868E-5 0.0 3.101991944126921E-5 1.0339973147089737E-5 7 8.271978517671789E-5 5.169986573544868E-5 0.0 4.1359892588358946E-5 1.0339973147089737E-5 8 8.271978517671789E-5 5.169986573544868E-5 0.0 4.1359892588358946E-5 3.101991944126921E-5 9 8.271978517671789E-5 1.2407967776507684E-4 0.0 5.169986573544868E-5 3.101991944126921E-5 10-11 8.788977175026276E-5 1.2407967776507684E-4 0.0 8.788977175026276E-5 3.101991944126921E-5 12-13 9.305975832380763E-5 1.2407967776507684E-4 0.0 1.0339973147089737E-4 3.101991944126921E-5 14-15 1.0339973147089737E-4 1.7577954350052552E-4 0.0 1.1890969119153197E-4 5.169986573544868E-5 16-17 1.7577954350052552E-4 1.8611951664761526E-4 0.0 1.447596240592563E-4 6.203983888253842E-5 18-19 1.8611951664761526E-4 2.2230942266242932E-4 0.0 2.0162947636824985E-4 7.754979860317302E-5 20-21 1.9128950322116014E-4 2.6883930182433315E-4 0.0 2.481593555301537E-4 9.305975832380763E-5 22-23 2.0679946294179473E-4 3.050292078391472E-4 0.0 4.0842893931004464E-4 1.0339973147089737E-4 24-25 2.0679946294179473E-4 3.15369180986237E-4 0.0 0.0010805271938708776 1.2407967776507684E-4 26-27 2.0679946294179473E-4 3.2053916755978186E-4 0.0 0.0029158724274793058 1.2407967776507684E-4 28-29 2.0679946294179473E-4 3.2053916755978186E-4 0.0 0.009988414060088685 1.3441965091216658E-4 30-31 2.0679946294179473E-4 3.618990601481408E-4 0.0 0.01158593991131405 1.602695837798909E-4 32-33 2.0679946294179473E-4 3.670690467216857E-4 0.0 0.01509119080817747 1.8094953007407038E-4 34-35 2.0679946294179473E-4 5.014886976338522E-4 0.0 0.019537379261426055 1.8611951664761526E-4 36-37 2.119694495153396E-4 6.30738361972474E-4 0.0 0.02666162075977089 2.0679946294179473E-4 38-39 2.1713943608888447E-4 6.410783351195637E-4 0.0 0.045842270947622346 2.119694495153396E-4 40-41 2.1713943608888447E-4 7.341380934433714E-4 0.0 0.06629473783256584 2.1713943608888447E-4 42-43 2.274794092359742E-4 7.599880263110957E-4 0.0 0.07826325675032222 2.1713943608888447E-4 44-45 2.326493958095191E-4 8.685577443555379E-4 0.0 0.09388695617557481 2.1713943608888447E-4 46-47 2.3781938238306394E-4 9.616175026793455E-4 0.0 0.10963473527859248 2.5332934210369856E-4 48-49 2.429893689566088E-4 9.667874892528904E-4 0.0 0.12533598450244826 2.895192481185126E-4 50-51 2.998592212656024E-4 0.0010960371535915121 0.0 0.14064948473328814 2.895192481185126E-4 52-53 3.3087914070687157E-4 0.0011063771267386018 0.0 0.1770203402781763 2.998592212656024E-4 54-55 3.3087914070687157E-4 0.0011270570730327813 0.0 0.22278506142719548 3.15369180986237E-4 56-57 3.3087914070687157E-4 0.0011580769924740505 0.0 0.26844121285817024 3.2053916755978186E-4 58-59 3.3087914070687157E-4 0.001183926925341775 0.0 0.454157470553049 3.2053916755978186E-4 60-61 3.515590870010511E-4 0.0012304568045036785 0.0 0.6186819532829673 3.2053916755978186E-4 62-63 4.0325895273649975E-4 0.0012666467105184927 0.0 0.6257234749961353 3.2053916755978186E-4 64-65 4.0325895273649975E-4 0.0014424262540190182 0.0 0.6313432504015788 3.2053916755978186E-4 66-67 4.0842893931004464E-4 0.001463106200313198 0.0 0.6367562263440802 3.3087914070687157E-4 68-69 4.1359892588358946E-4 0.0015303160257692811 0.0 0.6422467520851849 3.4121911385396133E-4 70-71 4.1359892588358946E-4 0.0015613359452105503 0.0 0.6471323893971848 3.4638910042750616E-4 72-73 4.3427887217776894E-4 0.001576845904931185 0.0 0.6507307000523719 3.722390332952305E-4 74-75 4.3427887217776894E-4 0.0016233757840930887 0.0 0.6540136415265729 3.722390332952305E-4 76-77 4.394488587513138E-4 0.0017216055289904413 0.0 0.6570742735781114 3.722390332952305E-4 78-79 4.446188453248587E-4 0.0017577954350052553 0.0 0.6591784581135443 3.722390332952305E-4 80-81 4.446188453248587E-4 0.0017733053947258898 0.0 0.6599177661935612 3.9291897958941E-4 82-83 4.446188453248587E-4 0.0017836453678729796 0.0 0.6605019746763718 4.239388990306792E-4 84-85 4.446188453248587E-4 0.001809495300740704 0.0 0.6607139441258871 4.34278872177769E-4 86-87 4.549588184719484E-4 0.0018405152201819732 0.0 0.6607759839647696 4.549588184719484E-4 88 4.652987916190382E-4 0.001923235005358691 0.0 0.6607863239379167 4.549588184719484E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13490 0.0 54.468357 1 GTATCAA 25345 0.0 39.049168 1 TCAACGC 31180 0.0 31.068394 4 ATCAACG 31685 0.0 30.58674 3 TATCAAC 32130 0.0 30.349646 2 CAACGCA 31965 0.0 30.265984 5 AACGCAG 32985 0.0 29.39501 6 AGACCGA 6610 0.0 26.113176 88-89 CGAGACC 6745 0.0 25.456705 86-87 ACCGAGG 7025 0.0 25.259382 90-91 GTGGTAT 6195 0.0 25.243156 1 ACGCAGA 38395 0.0 25.230955 7 GAGACCG 6685 0.0 24.980528 88-89 GACCGAG 6855 0.0 24.800266 90-91 CGCAGAG 39475 0.0 24.563002 8 TGGTATC 6055 0.0 23.845575 2 CACGAGA 7395 0.0 23.379755 84-85 TCTCCGA 7175 0.0 23.08793 74-75 ACGAGAC 7440 0.0 22.85571 86-87 TCCGAGC 7415 0.0 22.5764 76-77 >>END_MODULE