##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139550_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9058056 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.495669269432646 33.0 33.0 33.0 33.0 33.0 2 32.50754532760672 33.0 33.0 33.0 33.0 33.0 3 32.49914065446272 33.0 33.0 33.0 33.0 33.0 4 36.387171265004326 37.0 37.0 37.0 37.0 37.0 5 36.412311758726155 37.0 37.0 37.0 37.0 37.0 6 36.399706184196695 37.0 37.0 37.0 37.0 37.0 7 36.372822601229224 37.0 37.0 37.0 37.0 37.0 8 36.358633574356354 37.0 37.0 37.0 37.0 37.0 9 36.40776884134962 37.0 37.0 37.0 37.0 37.0 10-11 36.34683104189243 37.0 37.0 37.0 37.0 37.0 12-13 36.32508305314076 37.0 37.0 37.0 35.0 37.0 14-15 38.18376779741702 40.0 37.0 40.0 35.0 40.0 16-17 38.119746665288886 40.0 37.0 40.0 33.0 40.0 18-19 38.1503582556787 40.0 37.0 40.0 33.0 40.0 20-21 38.16383970531412 40.0 37.0 40.0 33.0 40.0 22-23 38.16711123625241 40.0 37.0 40.0 33.0 40.0 24-25 38.13960404733531 40.0 37.0 40.0 33.0 40.0 26-27 37.99960612065816 40.0 37.0 40.0 33.0 40.0 28-29 37.91917258917971 40.0 37.0 40.0 33.0 40.0 30-31 37.865846673925404 40.0 37.0 40.0 33.0 40.0 32-33 37.781861647604735 40.0 37.0 40.0 33.0 40.0 34-35 37.70996989425777 40.0 37.0 40.0 33.0 40.0 36-37 37.6557541814921 40.0 37.0 40.0 33.0 40.0 38-39 37.58565201576995 40.0 37.0 40.0 33.0 40.0 40-41 37.57022254155261 40.0 37.0 40.0 33.0 40.0 42-43 37.51288418268628 40.0 37.0 40.0 33.0 40.0 44-45 37.418076165499656 40.0 37.0 40.0 33.0 40.0 46-47 37.37021301360348 40.0 37.0 40.0 33.0 40.0 48-49 37.386306946871336 40.0 37.0 40.0 33.0 40.0 50-51 37.26403930395027 40.0 37.0 40.0 33.0 40.0 52-53 37.16744023077071 40.0 37.0 40.0 33.0 40.0 54-55 37.046864959715116 38.5 37.0 40.0 33.0 40.0 56-57 36.92530920841493 37.0 37.0 40.0 33.0 40.0 58-59 36.808999209878856 37.0 37.0 40.0 33.0 40.0 60-61 36.64664971747449 37.0 37.0 40.0 33.0 40.0 62-63 36.480524294111234 37.0 37.0 40.0 33.0 40.0 64-65 36.35096045769288 37.0 37.0 40.0 33.0 40.0 66-67 36.1406599020762 37.0 37.0 40.0 33.0 40.0 68-69 35.95414059015835 37.0 37.0 40.0 33.0 40.0 70-71 35.70872919478808 37.0 33.0 37.0 33.0 40.0 72-73 35.500463902118256 37.0 33.0 37.0 33.0 40.0 74-75 35.30285097314644 37.0 33.0 37.0 33.0 40.0 76-77 33.533615305148196 35.0 33.0 37.0 27.0 37.0 78-79 34.7903052546871 37.0 33.0 37.0 30.0 37.0 80-81 34.880276509957035 37.0 33.0 37.0 33.0 37.0 82-83 34.733873198416994 37.0 33.0 37.0 33.0 37.0 84-85 34.56160495575991 37.0 33.0 37.0 27.0 37.0 86-87 34.42506161724138 37.0 33.0 37.0 27.0 37.0 88-89 34.29463821581498 37.0 33.0 37.0 27.0 37.0 90-91 34.22684749416596 37.0 33.0 37.0 27.0 37.0 92-93 34.184192064401564 37.0 33.0 37.0 27.0 37.0 94-95 34.193090581453234 37.0 33.0 37.0 27.0 37.0 96-97 34.157802827119255 37.0 33.0 37.0 27.0 37.0 98-99 34.19298661925187 37.0 33.0 37.0 27.0 37.0 100 34.19853210312787 37.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 4.0 19 19.0 20 99.0 21 515.0 22 1862.0 23 5396.0 24 12288.0 25 23636.0 26 40278.0 27 63029.0 28 92191.0 29 127350.0 30 169507.0 31 222932.0 32 292012.0 33 384190.0 34 516433.0 35 725518.0 36 1191491.0 37 2513797.0 38 2611032.0 39 64474.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.65524655621471 20.718198253576706 15.032596398167552 23.59395879204103 2 14.232192867873636 20.742949701348724 42.78633296150962 22.23852446926802 3 17.75192160437074 26.53683086083813 31.359311534395463 24.351936000395668 4 11.821437427121902 18.85225703786316 38.38348789028492 30.942817644730024 5 12.744302677188582 38.05229352490535 35.815219623442104 13.388184174463962 6 28.930405037284494 38.38600008500721 18.71826788422018 13.965326993488118 7 25.68982792775845 33.31230233065462 22.509465607189888 18.488404134397047 8 24.148205751874354 37.37793186529207 20.936335566925177 17.537526815908404 9 24.744772520373708 16.91529408595586 20.954210853215027 37.385722540455404 10-11 23.688492013111105 27.05104454971699 28.637801847433806 20.622661589738097 12-13 24.771308604188434 24.634721392226872 28.738233125401784 21.855736878182906 14-15 22.008571022929882 26.21006248425418 26.34683718037236 25.434529312443573 16-17 21.351811028768203 29.639836627196832 27.048811577230257 21.959540766804707 18-19 21.191522772656736 27.869771394656865 29.239182226296677 21.699523606389715 20-21 21.838349962631483 26.8060359524931 29.612618839418165 21.74299524545725 22-23 21.54007058663756 27.284457082982083 29.485086323162697 21.690386007217658 24-25 21.35992697192801 27.67489830094439 29.699652617494493 21.265522109633107 26-27 21.14485196641626 27.663593680954484 29.71460450729121 21.476949845338048 28-29 20.668571140245295 26.94854798857272 30.03993072183071 22.342950149351278 30-31 20.937623447944663 26.9510888869463 30.19108773614866 21.920199928960376 32-33 20.934156841274035 27.36011774283073 30.10594437640274 21.599781039492502 34-35 21.06728405701993 27.85870208504874 30.196350432356496 20.877663425574834 36-37 21.303259809557588 27.467174158961367 29.312361592947127 21.91720443853392 38-39 21.380640834427318 27.207232804173753 29.693203575953625 21.718922785445308 40-41 21.319419465454377 27.120511284887154 29.92598220648439 21.634087043174073 42-43 21.56021664810991 27.11789064118848 29.911216614662887 21.41067609603872 44-45 21.324717924216777 27.5387708011404 29.43502618789447 21.70148508674835 46-47 21.991318697543335 27.221321878197923 28.540964021605326 22.246395402653413 48-49 21.66345352400313 27.37610383234349 28.803274698729957 22.15716794492342 50-51 21.54458032327435 27.814524387396762 28.698817477913263 21.94207781141563 52-53 21.537836141960888 28.014484044423675 28.92928637574726 21.51839343786818 54-55 21.51826104802225 28.087228873747883 28.438571737356376 21.955938340873494 56-57 21.929961673291647 28.227763019418077 28.001695985187446 21.84057932210283 58-59 21.446123785009217 28.48780166916192 28.56564391618376 21.500430629645106 60-61 21.844492541621253 28.890828092662485 27.828192973203496 21.43648639251276 62-63 21.503307437573653 29.060638718949782 27.904633995069634 21.531419848406934 64-65 21.590978553846814 28.692741814778994 27.996424173742646 21.719855457631553 66-67 21.76355962932413 28.405418216906313 27.95952223065147 21.871499923118087 68-69 21.757839696258117 28.23812296255014 28.079350901054127 21.92468644013762 70-71 21.77852332651669 28.07141857673851 28.13885560288643 22.011202493858367 72-73 21.79774687621891 28.04534181339215 28.095031705229996 22.061879605158943 74-75 21.737130075528082 28.185707136361938 28.02659109761588 22.0505716904941 76-77 21.868015435836803 28.076641350913036 28.019698237496648 22.035644975753513 78-79 21.83613878715817 28.008009393756673 27.997515680701607 22.158336138383554 80-81 21.79773035179262 28.11709771666939 27.98426836312143 22.10090356841656 82-83 21.911989307913892 28.079916137809874 28.0224753414622 21.985619212814033 84-85 21.94200657617939 28.059206408551834 27.9578701984346 22.040916816834176 86-87 21.85259478781104 28.044867833124627 28.085248294667842 22.017289084396495 88-89 21.916058359263175 27.941947567267366 28.073405854016 22.06858821945346 90-91 21.946398287972553 27.927892449969864 28.087286773061535 22.038422488996044 92-93 21.882388437322785 27.87952394108153 28.160295464789964 22.077792156805724 94-95 21.765839900666784 27.912986487031873 28.232127424997085 22.089046187304263 96-97 21.86135564672174 28.05689582895879 28.22609766322046 21.855650861099008 98-99 22.947210518404347 29.892007149009775 28.55013641532768 18.610645917258196 100 21.94068337162553 30.93205177147912 22.360800510007913 24.766464346887442 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3055.0 1 2515.5 2 2996.0 3 4225.0 4 5569.5 5 9156.5 6 12469.5 7 15571.0 8 18216.0 9 18636.5 10 16824.0 11 14411.5 12 14972.0 13 19623.0 14 31424.0 15 48190.0 16 61770.5 17 69051.5 18 70628.5 19 67346.5 20 60947.0 21 53607.5 22 48160.5 23 47980.5 24 53611.5 25 64634.0 26 79539.5 27 95924.0 28 113946.5 29 134180.5 30 153925.5 31 173464.0 32 194529.0 33 216305.5 34 239238.5 35 259561.0 36 279204.5 37 297056.0 38 312417.5 39 325535.0 40 333890.5 41 339641.5 42 342395.5 43 346003.5 44 350471.5 45 356940.5 46 371598.5 47 391245.0 48 394871.0 49 391429.5 50 392628.0 51 378090.5 52 349091.0 53 315836.0 54 286121.5 55 261648.0 56 236822.0 57 209381.0 58 181597.5 59 155619.0 60 129681.0 61 104073.5 62 81284.5 63 62560.0 64 46575.0 65 33729.0 66 24682.0 67 18559.5 68 13988.0 69 10058.5 70 7163.5 71 5117.5 72 3576.0 73 2470.5 74 1750.0 75 1233.0 76 844.0 77 577.0 78 401.5 79 271.5 80 185.5 81 132.5 82 95.0 83 68.0 84 50.5 85 39.5 86 34.0 87 26.0 88 16.5 89 9.5 90 5.0 91 3.0 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.001346867363151652 5 0.007109693294013638 6 1.1039896419275835E-5 7 0.0 8 0.0 9 6.403139923179985E-4 10-11 9.494310920577218E-4 12-13 0.0011812689168625146 14-15 0.0010377502634119286 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 192.0 20-21 618.0 22-23 1378.0 24-25 2925.0 26-27 3964.0 28-29 7843.0 30-31 17153.0 32-33 22003.0 34-35 31382.0 36-37 43295.0 38-39 50917.0 40-41 55411.0 42-43 68796.0 44-45 82687.0 46-47 79770.0 48-49 73179.0 50-51 61839.0 52-53 60450.0 54-55 79133.0 56-57 86040.0 58-59 82760.0 60-61 86281.0 62-63 87049.0 64-65 94965.0 66-67 88968.0 68-69 70865.0 70-71 69423.0 72-73 65325.0 74-75 67092.0 76-77 65401.0 78-79 72584.0 80-81 74469.0 82-83 72431.0 84-85 72782.0 86-87 78406.0 88-89 86486.0 90-91 92394.0 92-93 98734.0 94-95 112893.0 96-97 295482.0 98-99 544970.0 100-101 5849321.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.53536283141209 #Duplication Level Percentage of deduplicated Percentage of total 1 89.64184373797711 76.67547629004619 2 7.3947313863710855 12.650220643481635 3 1.7289323468645308 4.436545668000673 4 0.5997407146247127 2.051961585207807 5 0.26434740892022845 1.13055257677677 6 0.1255533927767079 0.6443553003522302 7 0.07166441604951052 0.42908892802273074 8 0.04134101342826476 0.28288948667239244 9 0.034296749613340706 0.26402264299036704 >10 0.09530668074133358 1.2437497672637507 >50 0.0017861313511980418 0.1003410555817268 >100 3.955351882278196E-4 0.05775372945788895 >500 6.0486093819350655E-5 0.033042326145785214 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 1.1039896419275835E-5 0.0 0.0 0.0 2 0.0 1.1039896419275835E-5 0.0 0.0 0.0 3 0.0 2.207979283855167E-5 0.0 0.0 0.0 4 0.0 6.623937851565502E-5 0.0 0.0 0.0 5 0.0 8.831917135420668E-5 0.0 0.0 0.0 6 0.0 8.831917135420668E-5 0.0 0.0 0.0 7 0.0 8.831917135420668E-5 0.0 1.1039896419275835E-5 0.0 8 0.0 8.831917135420668E-5 0.0 1.1039896419275835E-5 0.0 9 0.0 9.935906777348253E-5 0.0 3.311968925782751E-5 0.0 10-11 1.1039896419275835E-5 9.935906777348253E-5 0.0 8.831917135420668E-5 0.0 12-13 1.1039896419275835E-5 9.935906777348253E-5 0.0 1.0487901598312045E-4 0.0 14-15 1.1039896419275835E-5 1.545585498698617E-4 0.0 1.1591891240239627E-4 2.207979283855167E-5 16-17 1.1039896419275835E-5 1.545585498698617E-4 0.0 1.6007849807949962E-4 2.207979283855167E-5 18-19 1.1039896419275835E-5 1.6007849807949962E-4 0.0 2.152779801758788E-4 2.207979283855167E-5 20-21 1.1039896419275835E-5 1.7663834270841336E-4 0.0 2.6495751406262007E-4 2.207979283855167E-5 22-23 1.1039896419275835E-5 1.9871813554696505E-4 0.0 5.354349763348781E-4 3.8639637467465425E-5 24-25 1.1039896419275835E-5 2.2631787659515464E-4 0.0 0.0012364683989588936 5.519948209637918E-5 26-27 1.1039896419275835E-5 2.3735777301443046E-4 0.0 0.0029973318778333895 5.519948209637918E-5 28-29 1.1039896419275835E-5 2.483976694337063E-4 0.0 0.009742708590010925 5.519948209637918E-5 30-31 1.1039896419275835E-5 2.870373069011717E-4 0.0 0.011774049531157679 6.0719430306017095E-5 32-33 1.1039896419275835E-5 3.2015699615899924E-4 0.0 0.015229537110391014 6.623937851565502E-5 34-35 1.1039896419275835E-5 3.6431658183610257E-4 0.0 0.019954612777841073 6.623937851565502E-5 36-37 1.1039896419275835E-5 4.0847616751320595E-4 0.0 0.027897818251510036 6.623937851565502E-5 38-39 1.1039896419275835E-5 4.4159585677103344E-4 0.0 0.046505563666199456 8.279922314456876E-5 40-41 1.1039896419275835E-5 4.747155460288609E-4 0.0 0.06536722669853222 8.831917135420668E-5 42-43 1.1039896419275835E-5 4.912753906577747E-4 0.0 0.07667208063187067 8.831917135420668E-5 44-45 1.1039896419275835E-5 5.464748727541538E-4 0.0 0.09007451488487155 8.831917135420668E-5 46-47 1.6559844628913755E-5 5.851145102216193E-4 0.0 0.10420006235333498 9.38391195638446E-5 48-49 2.207979283855167E-5 6.01674354850533E-4 0.0 0.11771841551873824 9.935906777348253E-5 50-51 2.207979283855167E-5 6.73433681575826E-4 0.0 0.13064613422571025 9.935906777348253E-5 52-53 3.311968925782751E-5 6.73433681575826E-4 0.0 0.157892598588483 1.0487901598312045E-4 54-55 3.311968925782751E-5 6.73433681575826E-4 0.0 0.1905872518341684 1.1591891240239627E-4 56-57 3.311968925782751E-5 6.844735779951019E-4 0.0 0.22627371700947752 1.2143886061203419E-4 58-59 3.311968925782751E-5 6.955134744143776E-4 0.0 0.2585598940876497 1.2143886061203419E-4 60-61 3.311968925782751E-5 7.010334226240155E-4 0.0 0.271559372121347 1.2143886061203419E-4 62-63 3.311968925782751E-5 7.120733190432914E-4 0.0 0.2869158680405597 1.3247875703131004E-4 64-65 3.311968925782751E-5 7.617528529300327E-4 0.0 0.2924744558876651 1.3247875703131004E-4 66-67 3.311968925782751E-5 7.948725421878602E-4 0.0 0.29681865512865013 1.3247875703131004E-4 68-69 3.311968925782751E-5 8.003924903974981E-4 0.0 0.3014995712104231 1.3799870524094796E-4 70-71 3.311968925782751E-5 8.059124386071361E-4 0.0 0.30566713210869967 1.4351865345058585E-4 72-73 3.311968925782751E-5 8.059124386071361E-4 0.0 0.30897910103448245 1.545585498698617E-4 74-75 3.8639637467465425E-5 8.224722832360497E-4 0.0 0.3115072373144966 1.545585498698617E-4 76-77 4.415958567710334E-5 8.335121796553256E-4 0.0 0.31405745338734936 1.545585498698617E-4 78-79 4.415958567710334E-5 8.500720242842393E-4 0.0 0.3157410375912889 1.545585498698617E-4 80-81 4.415958567710334E-5 8.611119207035152E-4 0.0 0.31640343137644544 1.6007849807949962E-4 82-83 4.415958567710334E-5 8.611119207035152E-4 0.0 0.31685054718142613 1.876782391276892E-4 84-85 4.415958567710334E-5 8.77671765332429E-4 0.0 0.3170713451098116 1.876782391276892E-4 86-87 4.415958567710334E-5 8.942316099613427E-4 0.0 0.3171596642811658 1.9319818733732713E-4 88 4.415958567710334E-5 9.163114027998944E-4 0.0 0.31717622412579477 2.0975803196624087E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15515 0.0 55.04529 1 CTTATAC 14210 0.0 43.24485 1 GTATCAA 27710 0.0 35.75511 1 TTATACA 18465 0.0 34.29164 2 TATACAC 20260 0.0 33.475555 3 ATCAACG 34415 0.0 28.2092 3 TCAACGC 34550 0.0 28.12356 4 CAACGCA 35185 0.0 27.688114 5 TATCAAC 35320 0.0 27.606485 2 AACGCAG 36195 0.0 26.995838 6 TGGTATC 6230 0.0 26.244156 2 GTGGTAT 6700 0.0 25.860998 1 TACACAT 27330 0.0 24.831026 5 ACACATC 25745 0.0 24.411674 6 ACGCAGA 40910 0.0 23.84336 7 CGCAGAG 41660 0.0 23.393856 8 CACATCT 27905 0.0 22.461578 7 GTACATG 33460 0.0 21.221216 1 CATCTCC 29570 0.0 21.168346 9 ATACACA 34020 0.0 21.09671 4 >>END_MODULE