##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139549_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10649526 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51636476590601 33.0 33.0 33.0 33.0 33.0 2 32.52439394955231 33.0 33.0 33.0 33.0 33.0 3 32.52073923290107 33.0 33.0 33.0 33.0 33.0 4 36.41383860652577 37.0 37.0 37.0 37.0 37.0 5 36.43752294703069 37.0 37.0 37.0 37.0 37.0 6 36.42159162764615 37.0 37.0 37.0 37.0 37.0 7 36.39712950604562 37.0 37.0 37.0 37.0 37.0 8 36.3805147759628 37.0 37.0 37.0 37.0 37.0 9 36.42843240159233 37.0 37.0 37.0 37.0 37.0 10-11 36.36814441318796 37.0 37.0 37.0 37.0 37.0 12-13 36.34909037266072 37.0 37.0 37.0 37.0 37.0 14-15 38.25367621995571 40.0 37.0 40.0 37.0 40.0 16-17 38.20035056020333 40.0 37.0 40.0 37.0 40.0 18-19 38.20782474262235 40.0 37.0 40.0 35.0 40.0 20-21 38.20472567728008 40.0 37.0 40.0 33.0 40.0 22-23 38.208054464365446 40.0 37.0 40.0 35.0 40.0 24-25 38.18579562979149 40.0 37.0 40.0 35.0 40.0 26-27 38.05006235992515 40.0 37.0 40.0 33.0 40.0 28-29 37.97387146747951 40.0 37.0 40.0 33.0 40.0 30-31 37.90935439850691 40.0 37.0 40.0 33.0 40.0 32-33 37.843946450086975 40.0 37.0 40.0 33.0 40.0 34-35 37.78678188093611 40.0 37.0 40.0 33.0 40.0 36-37 37.73017613315091 40.0 37.0 40.0 33.0 40.0 38-39 37.662628988913305 40.0 37.0 40.0 33.0 40.0 40-41 37.65383524129729 40.0 37.0 40.0 33.0 40.0 42-43 37.59302008003793 40.0 37.0 40.0 33.0 40.0 44-45 37.50435312712256 40.0 37.0 40.0 33.0 40.0 46-47 37.462923982907185 40.0 37.0 40.0 33.0 40.0 48-49 37.46653682574033 40.0 37.0 40.0 33.0 40.0 50-51 37.35876514508293 40.0 37.0 40.0 33.0 40.0 52-53 37.245911150528954 40.0 37.0 40.0 33.0 40.0 54-55 37.11587720508048 38.5 37.0 40.0 33.0 40.0 56-57 36.99805092966618 37.0 37.0 40.0 33.0 40.0 58-59 36.87387974944532 37.0 37.0 40.0 33.0 40.0 60-61 36.71370070564413 37.0 37.0 40.0 33.0 40.0 62-63 36.53797433487398 37.0 37.0 40.0 33.0 40.0 64-65 36.39233967911606 37.0 37.0 40.0 33.0 40.0 66-67 36.174307906813894 37.0 37.0 40.0 33.0 40.0 68-69 35.981784813944884 37.0 37.0 40.0 33.0 40.0 70-71 35.73284017092299 37.0 33.0 37.0 33.0 40.0 72-73 35.519536131911174 37.0 33.0 37.0 33.0 40.0 74-75 35.31790162904845 37.0 33.0 37.0 33.0 40.0 76-77 33.539021625332836 35.0 33.0 37.0 27.0 37.0 78-79 34.79976344642269 37.0 33.0 37.0 30.0 37.0 80-81 34.890059600894055 37.0 33.0 37.0 33.0 37.0 82-83 34.7429131691011 37.0 33.0 37.0 33.0 37.0 84-85 34.57522933937986 37.0 33.0 37.0 30.0 37.0 86-87 34.437308598921945 37.0 33.0 37.0 27.0 37.0 88-89 34.30468146073581 37.0 33.0 37.0 27.0 37.0 90-91 34.23448756184496 37.0 33.0 37.0 27.0 37.0 92-93 34.187687904953464 37.0 33.0 37.0 27.0 37.0 94-95 34.198453178793834 37.0 33.0 37.0 27.0 37.0 96-97 34.161836925905966 37.0 33.0 37.0 27.0 37.0 98-99 34.19120857265235 37.0 33.0 37.0 27.0 37.0 100 34.19732344339553 37.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 11.0 20 101.0 21 531.0 22 2027.0 23 5768.0 24 13158.0 25 25615.0 26 44710.0 27 70938.0 28 104201.0 29 144720.0 30 195605.0 31 257437.0 32 338493.0 33 446860.0 34 599415.0 35 848334.0 36 1399563.0 37 2978060.0 38 3101447.0 39 72530.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.859011001992016 20.566220505964303 14.624491268437675 23.950277223606008 2 14.366226252698947 20.84308728857979 42.35136850222254 22.439317956498723 3 17.894871565175766 26.233383532750658 30.949330514804135 24.92241438726944 4 12.143732178509849 18.510066612441197 38.73814224739473 30.608058961654226 5 13.0902809015037 37.8068823995524 35.79536672067595 13.307469978267944 6 29.445175202196832 38.26921278359484 18.709869098374725 13.575742915833608 7 26.003227937699375 32.86408857334845 22.863960868110162 18.26872262084202 8 24.02451526950589 37.414876493094624 21.062139291457665 17.49846894594182 9 24.978843965938506 16.994380176091823 21.107984604642272 36.918791253327406 10-11 23.9182557380405 26.956516227507898 28.88953002894755 20.235698005504048 12-13 24.82908426765827 24.402501549383064 28.90691963866509 21.861494544293574 14-15 21.95114931479071 25.925993743972963 26.46252109447748 25.66033584675884 16-17 21.535413876636387 29.190440025218024 27.158274462168553 22.11587163597704 18-19 21.49847326538289 27.9909218494795 29.10861948221921 21.401985402918402 20-21 22.301249401423267 27.13102589349388 29.05780090268587 21.509923802396973 22-23 21.936394731657145 27.394281252635423 28.88409089756528 21.785233118142155 24-25 21.79159206654539 27.608832892315544 29.14110161487561 21.45847342626346 26-27 21.905833818327576 27.696533542402342 29.080674540705598 21.316958098564488 28-29 21.5976605463598 27.395360116203683 29.330237714688508 21.67674162274801 30-31 21.98946006290422 27.478614206108148 29.03190895633976 21.500016774647875 32-33 21.826147358466862 27.35549226616836 29.140287555275744 21.678072820089035 34-35 21.615783174673595 27.746389645435343 29.366806768873133 21.27102041101793 36-37 21.964096247527788 27.486779058069715 28.84191197217596 21.707212722226537 38-39 21.628317912800654 27.438721833779955 29.115194347501966 21.817765905917426 40-41 21.82997876345187 27.332263722146337 29.101658328441527 21.736099185960263 42-43 21.911787748333715 27.315340090540225 28.97668807949994 21.796184081626123 44-45 21.74660202670196 27.697617903768325 28.692279248879508 21.86350082065021 46-47 22.166505039698187 27.440344577148522 28.108339100132678 22.284811283020613 48-49 22.007782312254182 27.49876089610021 28.249236194163263 22.24422059748234 50-51 21.840969984370762 27.827724519686253 28.229268707974626 22.102036787968355 52-53 21.98011910064631 27.874417914373563 28.26819094592954 21.87727203905059 54-55 22.003137151492613 27.847629246464667 28.01661975700915 22.13261384503357 56-57 22.205348935587732 28.067011007536458 27.712688899831832 22.01495115704397 58-59 21.86332185347847 28.243906566846704 28.10912281125404 21.78364876842079 60-61 22.15127977364509 28.4330567535862 27.634648482457724 21.78101499031098 62-63 21.938385045396846 28.612242779787856 27.62185650826937 21.827515666545924 64-65 21.9782398240575 28.331484407185265 27.701748475850312 21.988527292906923 66-67 22.101559166743787 28.203716554575344 27.581858309107943 22.112865969572926 68-69 22.076438785554085 28.071794805395893 27.739293145321998 22.112473263728024 70-71 22.07963221378512 27.853508156486484 27.808233896084733 22.25862573364366 72-73 22.130471681993587 27.939655940548175 27.714499491446297 22.215372886011938 74-75 22.04028140180225 28.080250967666583 27.68005786167326 22.19940976885791 76-77 22.121943391842215 28.03662429948818 27.63656612045225 22.204866188217352 78-79 22.096987691595192 27.988445284598463 27.61154491855256 22.303022105253785 80-81 22.087265280015814 28.024251368302 27.648014294975955 22.24046905670623 82-83 22.169393923046897 28.00633607154498 27.69884824662128 22.12542175878684 84-85 22.264568445661613 27.966552670699237 27.64717034139675 22.12170854224241 86-87 22.06235060423058 28.024240083906292 27.732950070768243 22.18045924109488 88-89 22.161529719227982 27.995356997288628 27.668817172208023 22.17429611127537 90-91 22.158482089834898 28.05234171357092 27.678879878558888 22.11029631803529 92-93 22.163682132162585 28.01730473270421 27.72204459502989 22.096968540103315 94-95 22.011334445463923 28.07020110732608 27.74424027437929 22.174224172830705 96-97 22.08535107074297 28.178397629778758 27.836493745458412 21.899757554019857 98-99 23.15466252442752 30.084735514689914 28.05141721367607 18.709184747206496 100 22.152503793095484 31.091746350261474 21.910473844619965 24.845276012023078 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3562.0 1 2879.5 2 3169.0 3 4423.5 4 5918.5 5 9526.0 6 12731.0 7 15146.0 8 16817.5 9 16722.0 10 15137.0 11 13490.5 12 14513.0 13 19187.0 14 30303.5 15 45733.0 16 58540.0 17 66101.0 18 68350.5 19 65666.0 20 60194.0 21 54204.5 22 50543.0 23 52440.0 24 59881.5 25 72526.5 26 89931.5 27 110322.0 28 130594.0 29 151854.0 30 173488.0 31 195797.0 32 221388.5 33 247533.5 34 273566.0 35 296917.5 36 321335.5 37 343848.0 38 359337.5 39 371909.0 40 384815.5 41 394565.0 42 399157.0 43 407187.5 44 415164.0 45 421071.0 46 431101.0 47 445204.0 48 449307.0 49 445786.0 50 442982.0 51 427744.5 52 401570.0 53 372005.0 54 343210.0 55 317068.5 56 289030.0 57 257643.0 58 227023.0 59 198938.5 60 166777.5 61 133327.0 62 104743.5 63 80044.5 64 59200.5 65 42790.5 66 31258.5 67 23322.0 68 17580.0 69 12996.5 70 9451.5 71 6758.5 72 4628.0 73 3094.0 74 2038.5 75 1330.5 76 890.5 77 578.5 78 402.0 79 299.5 80 215.0 81 148.5 82 107.0 83 78.0 84 64.0 85 53.0 86 42.5 87 32.5 88 22.5 89 14.5 90 9.5 91 7.5 92 6.0 93 3.5 94 2.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0015399746430028905 5 0.006948666072086213 6 1.878017857320598E-5 7 1.878017857320598E-5 8 0.0 9 7.699873215014452E-4 10-11 8.779733482973795E-4 12-13 0.0011831512501119768 14-15 0.0010845553126026454 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 176.0 20-21 802.0 22-23 1612.0 24-25 3150.0 26-27 4783.0 28-29 8520.0 30-31 18700.0 32-33 23694.0 34-35 33591.0 36-37 46795.0 38-39 55291.0 40-41 58634.0 42-43 70853.0 44-45 84360.0 46-47 81225.0 48-49 74276.0 50-51 64768.0 52-53 64572.0 54-55 76485.0 56-57 83884.0 58-59 82082.0 60-61 85041.0 62-63 83609.0 64-65 90234.0 66-67 88498.0 68-69 74862.0 70-71 74086.0 72-73 70617.0 74-75 72319.0 76-77 70398.0 78-79 77855.0 80-81 80372.0 82-83 78219.0 84-85 79310.0 86-87 85790.0 88-89 92697.0 90-91 99072.0 92-93 107525.0 94-95 134628.0 96-97 359978.0 98-99 664898.0 100-101 7141265.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.83828416415547 #Duplication Level Percentage of deduplicated Percentage of total 1 88.48234333468527 73.29725500669026 2 7.843594167291645 12.994997649968354 3 1.9983099404331115 4.966097000809641 4 0.7404531556706155 2.453514756787524 5 0.3463759651741185 1.4346595315363624 6 0.18873179792932937 0.9380530984609052 7 0.11547932925864465 0.6696276644549576 8 0.06793420466846177 0.4502042360633547 9 0.050794547471651685 0.3786959841701731 >10 0.1619763828431719 2.090747023590918 >50 0.003025716449056658 0.17150878968785335 >100 8.995640704561904E-4 0.10296295423990849 >500 6.142131928941776E-5 0.030697695814646694 >1k 2.0472735138469155E-5 0.020978607725092645 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.390089286602991E-6 2 0.0 2.8170267859808972E-5 0.0 0.0 9.390089286602991E-6 3 0.0 3.7560357146411965E-5 0.0 0.0 9.390089286602991E-6 4 0.0 1.1268107143923589E-4 0.0 0.0 1.8780178573205983E-5 5 0.0 1.1268107143923589E-4 0.0 0.0 1.8780178573205983E-5 6 0.0 1.1268107143923589E-4 0.0 0.0 2.8170267859808972E-5 7 9.390089286602991E-6 1.2207116072583888E-4 0.0 0.0 2.8170267859808972E-5 8 9.390089286602991E-6 1.3146125001244188E-4 0.0 9.390089286602991E-6 3.7560357146411965E-5 9 1.8780178573205983E-5 2.065819643052658E-4 0.0 1.8780178573205983E-5 4.6950446433014955E-5 10-11 3.7560357146411965E-5 2.065819643052658E-4 0.0 4.6950446433014955E-5 4.6950446433014955E-5 12-13 3.7560357146411965E-5 2.065819643052658E-4 0.0 7.981575893612543E-5 4.6950446433014955E-5 14-15 3.7560357146411965E-5 2.6292250002488376E-4 0.0 1.1268107143923589E-4 6.103558036291944E-5 16-17 3.7560357146411965E-5 2.6292250002488376E-4 0.0 1.3146125001244188E-4 7.512071429282393E-5 18-19 3.7560357146411965E-5 3.004828571712957E-4 0.0 1.4554638394234637E-4 7.512071429282393E-5 20-21 3.7560357146411965E-5 3.4743330360431066E-4 0.0 1.7371665180215533E-4 7.512071429282393E-5 22-23 4.225540178971346E-5 4.084688839672301E-4 0.0 1.924968303753613E-4 7.981575893612543E-5 24-25 4.6950446433014955E-5 4.5072428575694356E-4 0.0 2.065819643052658E-4 8.451080357942692E-5 26-27 5.6340535719617944E-5 4.6011437504354653E-4 0.0 2.3005718752177327E-4 8.920584822272841E-5 28-29 5.6340535719617944E-5 4.6011437504354653E-4 0.0 3.990787946806271E-4 9.390089286602991E-5 30-31 5.6340535719617944E-5 5.258450000497675E-4 0.0 9.296188393736961E-4 9.390089286602991E-5 32-33 5.6340535719617944E-5 5.258450000497675E-4 0.0 0.0020892948662691656 9.390089286602991E-5 34-35 5.6340535719617944E-5 6.009657143425914E-4 0.0 0.00373725553606799 1.1268107143923589E-4 36-37 5.6340535719617944E-5 6.854765179220183E-4 0.0 0.006141118393438356 1.1268107143923589E-4 38-39 5.6340535719617944E-5 6.948666072086213E-4 0.0 0.009526245581258735 1.1268107143923589E-4 40-41 5.6340535719617944E-5 7.418170536416362E-4 0.0 0.012925457903009016 1.1268107143923589E-4 42-43 6.573062500622094E-5 7.559021875715407E-4 0.0 0.016381010760478917 1.2676620536914037E-4 44-45 6.573062500622094E-5 8.451080357942693E-4 0.0 0.019761442903655994 1.4554638394234637E-4 46-47 1.032909821526329E-4 9.108386608004901E-4 0.0 0.02367711013616944 1.6432656251555233E-4 48-49 1.1268107143923589E-4 9.108386608004901E-4 0.0 0.027653812949045807 1.7841169644545682E-4 50-51 1.1268107143923589E-4 0.001023519732239726 0.0 0.031499054511909735 1.7841169644545682E-4 52-53 1.1268107143923589E-4 0.001042299910812932 0.0 0.035471062280142795 2.0188691966196428E-4 54-55 1.1268107143923589E-4 0.001051690000099535 0.0 0.03921770790549739 2.3475223216507478E-4 56-57 1.3615629465574337E-4 0.001070470178672741 0.0 0.04315215531658404 2.4414232145167776E-4 58-59 1.6902160715885384E-4 0.0011221156697490573 0.0 0.04753732701342764 2.4414232145167776E-4 60-61 1.7841169644545682E-4 0.0011268107143923589 0.0 0.051772257281685594 2.5353241073828073E-4 62-63 1.8780178573205982E-4 0.0011408958483222634 0.0 0.05602596772851674 2.6292250002488376E-4 64-65 1.8780178573205982E-4 0.0012488818751181978 0.0 0.06023742277355819 2.6292250002488376E-4 66-67 1.9719187501866282E-4 0.0012488818751181978 0.0 0.06458972915789868 2.6292250002488376E-4 68-69 2.065819643052658E-4 0.001300527366194514 0.0 0.06864155268506786 2.6292250002488376E-4 70-71 2.065819643052658E-4 0.0013286976340543231 0.0 0.07227551723898322 2.6292250002488376E-4 72-73 2.065819643052658E-4 0.0013521728572708307 0.0 0.07546814759642824 2.910927678846927E-4 74-75 2.112770089485673E-4 0.00141320843763375 0.0 0.07799877665916774 2.910927678846927E-4 76-77 2.1597205359186877E-4 0.001488329151926574 0.0 0.08059983139155677 2.910927678846927E-4 78-79 2.1597205359186877E-4 0.0015118043751430816 0.0 0.08208816054348335 2.910927678846927E-4 80-81 2.5353241073828073E-4 0.0015118043751430816 0.0 0.0826233956328197 3.051779018145972E-4 82-83 2.6292250002488376E-4 0.0015211944644296844 0.0 0.08306003478464674 3.2865312503110465E-4 84-85 2.7231258931148674E-4 0.0015305845537162874 0.0 0.08323844648109222 3.2865312503110465E-4 86-87 2.910927678846927E-4 0.0015587548215760965 0.0 0.08332765232931494 3.2865312503110465E-4 88 2.910927678846927E-4 0.0016526557144421264 0.0 0.08333704241860154 3.2865312503110465E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13930 0.0 52.108356 1 CTTATAC 10725 0.0 44.184544 1 GTATCAA 25355 0.0 37.040348 1 TATACAC 15860 0.0 32.56342 3 TTATACA 16095 0.0 30.805222 2 TCAACGC 31310 0.0 29.377705 4 ATCAACG 31595 0.0 29.139927 3 CAACGCA 31850 0.0 28.920124 5 TATCAAC 33150 0.0 28.123009 2 AACGCAG 32870 0.0 28.098816 6 ACACATC 19380 0.0 24.694191 6 ACGCAGA 37605 0.0 24.527283 7 TACACAT 20930 0.0 24.367197 5 ACATCTC 19880 0.0 23.94446 8 CGCAGAG 38595 0.0 23.887327 8 CACATCT 21815 0.0 21.50489 7 GTACATG 30690 0.0 21.143574 1 TGGTATC 6690 0.0 21.01879 2 GCAGAGT 43965 0.0 20.83303 9 GTGGTAT 7215 0.0 20.562164 1 >>END_MODULE