##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139547_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6344446 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.46909785346112 33.0 33.0 33.0 33.0 33.0 2 32.486476518201904 33.0 33.0 33.0 33.0 33.0 3 32.47945778086849 33.0 33.0 33.0 33.0 33.0 4 36.364901048885905 37.0 37.0 37.0 37.0 37.0 5 36.386576700313945 37.0 37.0 37.0 37.0 37.0 6 36.37487654556442 37.0 37.0 37.0 37.0 37.0 7 36.34718334745067 37.0 37.0 37.0 37.0 37.0 8 36.33069995394397 37.0 37.0 37.0 33.0 37.0 9 36.38484778655221 37.0 37.0 37.0 37.0 37.0 10-11 36.319827925085974 37.0 37.0 37.0 35.0 37.0 12-13 36.29937728211415 37.0 37.0 37.0 33.0 37.0 14-15 38.144189185312634 40.0 37.0 40.0 33.0 40.0 16-17 38.0771626080512 40.0 37.0 40.0 33.0 40.0 18-19 38.09660094829398 40.0 37.0 40.0 33.0 40.0 20-21 38.102122089582174 40.0 37.0 40.0 33.0 40.0 22-23 38.10344459308845 40.0 37.0 40.0 33.0 40.0 24-25 38.07778922587528 40.0 37.0 40.0 33.0 40.0 26-27 37.936207892669145 40.0 37.0 40.0 33.0 40.0 28-29 37.85287378625401 40.0 37.0 40.0 33.0 40.0 30-31 37.78639483566961 40.0 37.0 40.0 33.0 40.0 32-33 37.7005917732085 40.0 37.0 40.0 33.0 40.0 34-35 37.62721211617141 40.0 37.0 40.0 33.0 40.0 36-37 37.571805467453856 40.0 37.0 40.0 33.0 40.0 38-39 37.5014566688369 40.0 37.0 40.0 33.0 40.0 40-41 37.48169254125278 40.0 37.0 40.0 33.0 40.0 42-43 37.41351280489771 40.0 37.0 40.0 33.0 40.0 44-45 37.31914979134381 40.0 37.0 40.0 33.0 40.0 46-47 37.26880935616791 40.0 37.0 40.0 33.0 40.0 48-49 37.2771416620427 40.0 37.0 40.0 33.0 40.0 50-51 37.15547735986917 40.0 37.0 40.0 33.0 40.0 52-53 37.045207971777316 38.5 37.0 40.0 33.0 40.0 54-55 36.90799462509159 37.0 37.0 40.0 33.0 40.0 56-57 36.79334194035308 37.0 37.0 40.0 33.0 40.0 58-59 36.669198273426346 37.0 37.0 40.0 33.0 40.0 60-61 36.50574142143735 37.0 37.0 40.0 33.0 40.0 62-63 36.32897139430819 37.0 37.0 40.0 33.0 40.0 64-65 36.18025218773876 37.0 37.0 40.0 33.0 40.0 66-67 35.96440288258859 37.0 35.0 40.0 33.0 40.0 68-69 35.77097569838587 37.0 33.0 38.5 33.0 40.0 70-71 35.51826674161127 37.0 33.0 37.0 33.0 40.0 72-73 35.30582605872738 37.0 33.0 37.0 33.0 40.0 74-75 35.108774201675274 37.0 33.0 37.0 30.0 40.0 76-77 33.33981888421161 35.0 33.0 37.0 27.0 37.0 78-79 34.62253338724639 37.0 33.0 37.0 27.0 37.0 80-81 34.7271943116004 37.0 33.0 37.0 30.0 37.0 82-83 34.58137843399322 37.0 33.0 37.0 27.0 37.0 84-85 34.413168231051635 37.0 33.0 37.0 27.0 37.0 86-87 34.27163526090543 37.0 33.0 37.0 27.0 37.0 88-89 34.13858074756956 37.0 33.0 37.0 27.0 37.0 90-91 34.06633707089021 37.0 33.0 37.0 27.0 37.0 92-93 34.023290062471304 37.0 33.0 37.0 27.0 37.0 94-95 34.03306725058993 37.0 33.0 37.0 27.0 37.0 96-97 33.99723124494955 37.0 33.0 37.0 27.0 37.0 98-99 34.03388715333243 37.0 33.0 37.0 27.0 37.0 100 34.04209879678908 37.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 4.0 19 11.0 20 67.0 21 383.0 22 1451.0 23 4152.0 24 9237.0 25 17673.0 26 30113.0 27 47555.0 28 69293.0 29 95574.0 30 127781.0 31 167644.0 32 218122.0 33 287540.0 34 381879.0 35 536300.0 36 877499.0 37 1788288.0 38 1649779.0 39 34099.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.799622220758124 20.539902144332224 14.915975327081357 23.744500307828297 2 14.501739001324939 20.60501421243084 42.233837280670365 22.65940950557385 3 18.049865977265785 25.924280859195587 31.05457907593508 24.97127408760355 4 12.173944293452777 18.324595116318402 38.00928163990875 31.49217895032007 5 13.118293773450269 37.697680536808654 35.67640409198533 13.507621597755742 6 29.860484250395423 37.76749581720702 18.320105225910225 14.051914706487329 7 26.172092279151286 32.92726156503839 22.26065479328767 18.639991362522647 8 24.297409103962742 37.24405566695658 20.768984399898745 17.689550829181933 9 24.76384633595749 16.96129459966654 20.800357985784597 37.47450107859137 10-11 24.05479995734811 26.751696716994378 28.448819582104456 20.744683743553058 12-13 24.940896407507193 24.271405083783744 28.58369366598948 22.204004842719584 14-15 22.17625941945641 25.891081739015853 26.04644755363466 25.886211287893072 16-17 21.657746003354745 29.303070748809272 26.796799909716306 22.242383338119673 18-19 21.545963193634243 27.72400458605842 29.02190356730911 21.70812865299823 20-21 22.11800707002738 26.73699494991289 29.080291167730387 22.064706812329344 22-23 22.07933098716438 27.077285642785924 29.023160864956036 21.820222505093657 24-25 22.04185605705259 27.308273915376258 29.028219003266692 21.62165102430446 26-27 21.671493825923072 27.346835710164147 29.22160883946217 21.76006162445061 28-29 21.34324955954316 26.897814881172323 29.67617456932517 22.082760989959343 30-31 21.774083164344262 26.871264880746697 29.12018924143487 22.23446271347417 32-33 21.97001512108578 27.05392638708587 29.430022412626517 21.54603607920183 34-35 21.911743809039876 27.486541873708664 29.27878335747105 21.322930959780408 36-37 21.739815977177734 27.15101931714582 28.9374853820709 22.17167932360555 38-39 21.730674599436586 27.09361951642925 29.204718403366265 21.9709874807679 40-41 21.792609034219765 26.978165978832923 29.329890190406694 21.899334796540618 42-43 21.87976987154673 27.011660212989508 29.265532116546428 21.843037798917333 44-45 21.733698086605898 27.301322405365603 28.93818482170892 22.02679468631958 46-47 22.266374279544806 27.04895982489539 28.246029509582588 22.438636385977215 48-49 21.995595411285713 27.17507617089778 28.452806309915392 22.376522107901117 50-51 21.925766927283572 27.55806305202676 28.3451395640954 22.17103045659427 52-53 22.015354175202013 27.71398034626794 28.421212484394005 21.84945299413604 54-55 22.008946843984045 27.715810941689732 28.07620311431998 22.19903910000624 56-57 22.244253659288123 27.907584814269242 27.75828723317342 22.08987429326921 58-59 21.909690738023283 28.133943580543697 28.12741426399798 21.82895141743504 60-61 22.16650226930515 28.414839375461533 27.604737061196737 21.813921294036582 62-63 21.957623952235192 28.55628922843026 27.64761876802137 21.838468051313175 64-65 22.02939949828125 28.2637592573036 27.675999671840167 22.03084157257498 66-67 22.18894096001404 28.023393275730168 27.607607966846615 22.180057797409173 68-69 22.138920518917306 27.892800137100636 27.78875566830824 22.179523675673813 70-71 22.163653475416307 27.686861589817095 27.851038407074657 22.29844652769194 72-73 22.23724004324841 27.730001253154747 27.729973931467004 22.30278477212984 74-75 22.06124691586114 27.892381439337306 27.7514997475602 22.294871897241354 76-77 22.228739713786926 27.764918067883666 27.713310637042753 22.293031581286655 78-79 22.16670325054183 27.697728071387345 27.659079453926662 22.476489224144164 80-81 22.17838235991893 27.81530997199019 27.64292234450939 22.36338532358149 82-83 22.24027129485688 27.752254716571436 27.7422577223217 22.265216266249986 84-85 22.26344631543816 27.731346060523528 27.720508831861835 22.28469879217648 86-87 22.201529466952643 27.680072808886745 27.81794524458727 22.300452479573345 88-89 22.249924262853657 27.6824237452961 27.717338692113696 22.350313299736545 90-91 22.26411520378396 27.67066766765993 27.74554402458338 22.319673103972725 92-93 22.261812525090324 27.64312525090325 27.7908972300281 22.304164993978322 94-95 22.12675089222042 27.634061133237026 27.878258493250158 22.360929481292388 96-97 22.286874709476706 27.711489271088418 27.880690036641642 22.12094598279323 98-99 23.298820326443614 29.641654285331537 28.10622977106539 18.953295617159466 100 22.338966431773745 30.620507156063013 22.008848355257328 25.03167805690591 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2042.0 1 1664.0 2 1856.0 3 2549.0 4 3305.5 5 5349.5 6 7356.0 7 9472.0 8 11368.0 9 11744.5 10 10544.5 11 8962.5 12 9342.0 13 12151.0 14 19095.5 15 29085.5 16 37163.5 17 41651.5 18 43183.0 19 41738.0 20 38104.0 21 33802.0 22 30711.0 23 30758.5 24 34481.0 25 41636.0 26 51042.0 27 61761.5 28 72943.0 29 85636.0 30 99056.0 31 111861.5 32 126616.5 33 141878.0 34 156229.0 35 169330.0 36 183281.5 37 195371.5 38 204291.0 39 212271.5 40 219484.0 41 225980.5 42 229887.5 43 234849.5 44 239700.5 45 244211.5 46 246752.5 47 247680.5 48 261409.5 49 270818.5 50 265102.5 51 261820.0 52 257151.0 53 240948.5 54 218838.0 55 199365.0 56 181164.0 57 163465.5 58 145461.5 59 125625.5 60 104737.0 61 84844.0 62 66918.5 63 50999.0 64 37047.0 65 26370.5 66 19140.0 67 14389.0 68 10798.0 69 7656.5 70 5230.0 71 3578.5 72 2365.5 73 1483.0 74 957.5 75 626.5 76 436.5 77 315.0 78 217.5 79 159.0 80 120.0 81 87.5 82 68.0 83 51.5 84 38.5 85 27.5 86 19.5 87 14.5 88 10.5 89 7.0 90 5.0 91 4.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0014658490276377165 5 0.006856390613144158 6 1.5761817501480824E-5 7 1.5761817501480824E-5 8 0.0 9 9.457090500888494E-4 10-11 9.693517763410707E-4 12-13 0.0012136599476140235 14-15 0.001016637228845513 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 119.0 20-21 451.0 22-23 946.0 24-25 1944.0 26-27 3017.0 28-29 5089.0 30-31 10312.0 32-33 12897.0 34-35 18637.0 36-37 25422.0 38-39 30242.0 40-41 32571.0 42-43 39769.0 44-45 47556.0 46-47 45789.0 48-49 42119.0 50-51 36417.0 52-53 36287.0 54-55 46722.0 56-57 52881.0 58-59 50247.0 60-61 52946.0 62-63 52483.0 64-65 56356.0 66-67 53695.0 68-69 44680.0 70-71 44072.0 72-73 42298.0 74-75 43858.0 76-77 42918.0 78-79 48235.0 80-81 49734.0 82-83 48061.0 84-85 49494.0 86-87 53466.0 88-89 59650.0 90-91 64235.0 92-93 69356.0 94-95 82206.0 96-97 217385.0 98-99 397459.0 100-101 4232425.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.42275086497511 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82990600046082 79.40600243367396 2 6.7864048893337285 11.865723678181432 3 1.4095218134569736 3.6967282300979085 4 0.48343506565980826 1.6905289321828123 5 0.2032406982137391 0.8883930462781653 6 0.09589718566895758 0.5030157462833725 7 0.06140337035606401 0.3757636084235588 8 0.036179260038833 0.2530312349483238 9 0.019793451612400478 0.15573581901619446 >10 0.07195292549098715 0.9649242939953971 >50 0.0018289734641744096 0.10617293244534506 >100 3.834638925654923E-4 0.06364090422578894 >500 5.290235104711251E-5 0.03033914024765387 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.5761817501480824E-5 0.0 2 1.5761817501480824E-5 0.0 0.0 1.5761817501480824E-5 0.0 3 1.5761817501480824E-5 0.0 0.0 1.5761817501480824E-5 0.0 4 1.5761817501480824E-5 3.152363500296165E-5 0.0 1.5761817501480824E-5 0.0 5 1.5761817501480824E-5 3.152363500296165E-5 0.0 3.152363500296165E-5 0.0 6 3.152363500296165E-5 3.152363500296165E-5 0.0 3.152363500296165E-5 0.0 7 3.152363500296165E-5 3.152363500296165E-5 0.0 4.728545250444247E-5 0.0 8 3.152363500296165E-5 3.152363500296165E-5 0.0 4.728545250444247E-5 0.0 9 3.152363500296165E-5 1.1033272251036576E-4 0.0 7.880908750740411E-5 3.152363500296165E-5 10-11 3.940454375370206E-5 1.1033272251036576E-4 0.0 1.260945400118466E-4 3.152363500296165E-5 12-13 6.30472700059233E-5 1.1033272251036576E-4 0.0 1.4185635751332742E-4 3.152363500296165E-5 14-15 6.30472700059233E-5 1.5761817501480822E-4 0.0 1.7337999251628905E-4 3.152363500296165E-5 16-17 9.457090500888494E-5 1.5761817501480822E-4 0.0 1.970227187685103E-4 4.728545250444247E-5 18-19 9.457090500888494E-5 1.970227187685103E-4 0.0 2.2066544502073152E-4 4.728545250444247E-5 20-21 9.457090500888494E-5 2.3642726252221235E-4 0.0 2.2066544502073152E-4 4.728545250444247E-5 22-23 9.457090500888494E-5 2.8371271502665484E-4 0.0 2.443081712729528E-4 5.516636125518288E-5 24-25 1.0245181375962534E-4 3.07355441278876E-4 0.0 2.6795089752517395E-4 6.30472700059233E-5 26-27 1.1033272251036576E-4 3.1523635002961645E-4 0.0 3.8616452878628016E-4 6.30472700059233E-5 28-29 1.1033272251036576E-4 3.1523635002961645E-4 0.0 5.910681563055308E-4 6.30472700059233E-5 30-31 1.1033272251036576E-4 3.467599850325781E-4 0.0 0.001166374495109581 6.30472700059233E-5 32-33 1.1033272251036576E-4 3.467599850325781E-4 0.0 0.0024430817127295275 7.092817875666371E-5 34-35 1.3397544876258698E-4 4.01926346287761E-4 0.0 0.004334499812907226 7.880908750740411E-5 36-37 1.5761817501480822E-4 4.5709270754294386E-4 0.0 0.007408054225695987 7.880908750740411E-5 38-39 1.5761817501480822E-4 4.728545250444247E-4 0.0 0.012042028571131349 7.880908750740411E-5 40-41 1.7337999251628905E-4 4.728545250444247E-4 0.0 0.016203148391522287 7.880908750740411E-5 42-43 1.7337999251628905E-4 4.807354337951651E-4 0.0 0.019954460956874722 7.880908750740411E-5 44-45 1.7337999251628905E-4 5.516636125518288E-4 0.0 0.023516631712209385 7.880908750740411E-5 46-47 1.7337999251628905E-4 6.225917913084925E-4 0.0 0.027827488798864392 8.668999625814453E-5 48-49 1.7337999251628905E-4 6.304727000592329E-4 0.0 0.03191768044049867 9.457090500888494E-5 50-51 1.8914181001776988E-4 7.014008788158966E-4 0.0 0.03524342393331112 9.457090500888494E-5 52-53 1.8914181001776988E-4 7.09281787566637E-4 0.0 0.03893957013740837 1.0245181375962534E-4 54-55 1.8914181001776988E-4 7.09281787566637E-4 0.0 0.04202100545894787 1.1821363126110617E-4 56-57 2.2854635377147193E-4 7.09281787566637E-4 0.0 0.04537827258676329 1.3397544876258698E-4 58-59 2.3642726252221235E-4 7.09281787566637E-4 0.0 0.048940443342097954 1.418563575133274E-4 60-61 2.521890800236932E-4 7.09281787566637E-4 0.0 0.052486852279931134 1.5761817501480822E-4 62-63 2.521890800236932E-4 7.09281787566637E-4 0.0 0.05586776213399878 1.5761817501480822E-4 64-65 2.521890800236932E-4 8.196145100770027E-4 0.0 0.05912257744805457 1.6549908376554864E-4 66-67 2.67950897525174E-4 8.274954188277432E-4 0.0 0.06284236637840404 1.7337999251628905E-4 68-69 2.67950897525174E-4 8.590190538307048E-4 0.0 0.06703500983379794 1.8914181001776986E-4 70-71 2.67950897525174E-4 8.668999625814453E-4 0.0 0.0711803678366874 2.049036275192507E-4 72-73 2.758318062759144E-4 8.668999625814453E-4 0.0 0.0736392113669184 2.049036275192507E-4 74-75 2.837127150266548E-4 8.826617800829261E-4 0.0 0.07586950854337793 2.049036275192507E-4 76-77 2.837127150266548E-4 8.905426888336665E-4 0.0 0.07796583027107488 2.127845362699911E-4 78-79 2.837127150266548E-4 8.984235975844068E-4 0.0 0.0796050592912289 2.2066544502073152E-4 80-81 2.837127150266548E-4 8.984235975844068E-4 0.0 0.08012519926877776 2.2066544502073152E-4 82-83 2.837127150266548E-4 8.984235975844068E-4 0.0 0.08037738834880145 2.2066544502073152E-4 84-85 2.837127150266548E-4 8.984235975844068E-4 0.0 0.08053500652381626 2.2066544502073152E-4 86-87 2.994745325281356E-4 9.299472325873685E-4 0.0 0.08057441106756996 2.2854635377147193E-4 88 2.994745325281356E-4 0.0010087563200947727 0.0 0.08059017288507145 2.3642726252221235E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9880 0.0 54.71209 1 CTTATAC 6805 0.0 48.00254 1 GTATCAA 17210 0.0 35.93573 1 TTATACA 9630 0.0 35.12747 2 TATACAC 10320 0.0 34.572075 3 TCAACGC 21570 0.0 27.993559 4 ATCAACG 21745 0.0 27.788063 3 TATCAAC 22270 0.0 27.34556 2 CAACGCA 22100 0.0 27.302961 5 GTGGTAT 4365 0.0 27.11434 1 AACGCAG 22600 0.0 26.772978 6 TGGTATC 4290 0.0 25.983227 2 TACACAT 14285 0.0 25.367977 5 ACGCAGA 25560 0.0 23.622368 7 ACACATC 14635 0.0 23.289074 6 ACATCTC 14745 0.0 23.174253 8 CGCAGAG 26170 0.0 23.088379 8 ATACACA 17940 0.0 21.854784 4 GTACATG 19850 0.0 21.334633 1 CACATCT 15965 0.0 21.052744 7 >>END_MODULE