##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139544_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8878390 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52184022103106 33.0 33.0 33.0 33.0 33.0 2 32.51943100044039 33.0 33.0 33.0 33.0 33.0 3 32.52033465526971 33.0 33.0 33.0 33.0 33.0 4 36.41041573979066 37.0 37.0 37.0 37.0 37.0 5 36.43297906489803 37.0 37.0 37.0 37.0 37.0 6 36.426466960789064 37.0 37.0 37.0 37.0 37.0 7 36.400848239376735 37.0 37.0 37.0 37.0 37.0 8 36.387417651173244 37.0 37.0 37.0 37.0 37.0 9 36.42835435253464 37.0 37.0 37.0 37.0 37.0 10-11 36.37026746966511 37.0 37.0 37.0 37.0 37.0 12-13 36.34954394884658 37.0 37.0 37.0 37.0 37.0 14-15 38.259042179944785 40.0 37.0 40.0 37.0 40.0 16-17 38.21339370088496 40.0 37.0 40.0 37.0 40.0 18-19 38.21550252917477 40.0 37.0 40.0 35.0 40.0 20-21 38.21072731332181 40.0 37.0 40.0 33.0 40.0 22-23 38.21969569294737 40.0 37.0 40.0 37.0 40.0 24-25 38.19949286402189 40.0 37.0 40.0 35.0 40.0 26-27 38.068717440957926 40.0 37.0 40.0 33.0 40.0 28-29 38.00056729825343 40.0 37.0 40.0 33.0 40.0 30-31 37.93784145024881 40.0 37.0 40.0 33.0 40.0 32-33 37.87408119507316 40.0 37.0 40.0 33.0 40.0 34-35 37.82794739699703 40.0 37.0 40.0 33.0 40.0 36-37 37.769853217115255 40.0 37.0 40.0 33.0 40.0 38-39 37.718768425640505 40.0 37.0 40.0 33.0 40.0 40-41 37.692179866624016 40.0 37.0 40.0 33.0 40.0 42-43 37.62605617873905 40.0 37.0 40.0 33.0 40.0 44-45 37.53798063880609 40.0 37.0 40.0 33.0 40.0 46-47 37.493302146795656 40.0 37.0 40.0 33.0 40.0 48-49 37.484719718415946 40.0 37.0 40.0 33.0 40.0 50-51 37.38869552106033 40.0 37.0 40.0 33.0 40.0 52-53 37.259772587896876 40.0 37.0 40.0 33.0 40.0 54-55 37.12478734426861 38.5 37.0 40.0 33.0 40.0 56-57 37.0109609194903 37.0 37.0 40.0 33.0 40.0 58-59 36.87110483790396 37.0 37.0 40.0 33.0 40.0 60-61 36.7074313462801 37.0 37.0 40.0 33.0 40.0 62-63 36.51419786160862 37.0 37.0 40.0 33.0 40.0 64-65 36.34757769610236 37.0 37.0 40.0 33.0 40.0 66-67 36.120112287448286 37.0 37.0 40.0 33.0 40.0 68-69 35.920991022307874 37.0 35.0 40.0 33.0 40.0 70-71 35.673215665388426 37.0 33.0 37.0 33.0 40.0 72-73 35.46051593892859 37.0 33.0 37.0 33.0 40.0 74-75 35.26051357493188 37.0 33.0 37.0 33.0 40.0 76-77 33.46189032954825 35.0 33.0 37.0 27.0 37.0 78-79 34.74368556319836 37.0 33.0 37.0 30.0 37.0 80-81 34.84735026459575 37.0 33.0 37.0 33.0 37.0 82-83 34.712554631509974 37.0 33.0 37.0 33.0 37.0 84-85 34.553731841338845 37.0 33.0 37.0 30.0 37.0 86-87 34.42169732880546 37.0 33.0 37.0 27.0 37.0 88-89 34.30018269948869 37.0 33.0 37.0 27.0 37.0 90-91 34.23699468747968 37.0 33.0 37.0 27.0 37.0 92-93 34.1945457685953 37.0 33.0 37.0 27.0 37.0 94-95 34.21155770150789 37.0 33.0 37.0 27.0 37.0 96-97 34.170676439316665 37.0 33.0 37.0 27.0 37.0 98-99 34.20095858674958 37.0 33.0 37.0 27.0 37.0 100 34.20795756605834 37.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 14.0 20 97.0 21 449.0 22 1576.0 23 4566.0 24 10469.0 25 20577.0 26 35867.0 27 56831.0 28 84144.0 29 117754.0 30 158404.0 31 210820.0 32 278457.0 33 368091.0 34 497814.0 35 708102.0 36 1182130.0 37 2530410.0 38 2549338.0 39 62477.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.47000751262335 20.34123303887304 14.343771787452456 23.84498766105116 2 14.744283591957553 21.015229112485486 41.70274115014096 22.537746145416005 3 18.37909801213959 26.262024984259536 30.02063437177236 25.338242631828518 4 12.721045266466266 18.0143838801064 38.649953504465735 30.6146173489616 5 13.70283490421251 37.54532833580676 35.112486588624904 13.639350171355838 6 30.024737595976024 37.54958247492873 18.803546454204696 13.622133474890546 7 26.611083747532067 32.46478217270772 23.13467525125904 17.789458828501168 8 24.357389121225808 36.7026904652758 21.037733192617132 17.902187220881263 9 25.61973669138341 17.123575196092688 21.35846089021051 35.898227222313395 10-11 24.468431755836278 26.745335962213506 28.534376775747173 20.251855506203043 12-13 25.26330230371987 24.275916552877902 28.742478987796417 21.718302155605812 14-15 22.37812789223346 25.569593648696156 26.506557615796623 25.545720843273767 16-17 21.898587469124468 28.575507496291557 27.173890761725943 22.352014272858028 18-19 21.87733924731849 27.772067908708674 28.967752036123667 21.38284080784917 20-21 22.740743748541714 26.943680881210764 28.82432074660612 21.491254623641403 22-23 22.46734952236129 26.853867826245835 28.679961703067885 21.998820948324994 24-25 22.22972755637042 26.99372385443993 28.756191126103754 22.020357463085897 26-27 22.14503758808722 27.16393531675334 28.673995472118634 22.017031623040804 28-29 22.0877650817763 27.217135226999034 28.727212822249864 21.967886868974798 30-31 22.409088823459992 27.105611542104157 28.51958567251292 21.965713961922926 32-33 22.16857880779819 27.2407514215021 28.516949193278084 22.073720577421625 34-35 22.309829992053956 27.23425751819752 28.498276844975013 21.957635644773514 36-37 22.31310467290028 27.197239126905583 28.423839246253284 22.065816953940857 38-39 22.1871362794545 27.28720174915269 28.51887046241463 22.00679150897818 40-41 22.438597840437705 27.142598053953915 28.345484641241864 22.07331946436652 42-43 22.282078017224112 27.285698308732254 28.132617286677768 22.299606387365866 44-45 22.39145430302114 27.40256427847698 27.971708415998926 22.234273002502952 46-47 22.480871713936452 27.36190171672428 27.66675606314393 22.49047050619534 48-49 22.452524088675187 27.476726703203212 27.624741025378093 22.44600818274351 50-51 22.441588755009803 27.58245757898412 27.505926675393866 22.47002699061221 52-53 22.58141257655164 27.52076465746105 27.363682852992856 22.534139912994455 54-55 22.61639270735819 27.399098404551918 27.37262191420174 22.611886973888154 56-57 22.557207061980417 27.581293216792258 27.35086883947216 22.510630881755166 58-59 22.504494762018588 27.590216899713916 27.402598194482536 22.50269014378496 60-61 22.636127058543078 27.55803775402769 27.35012862790282 22.455706559526412 62-63 22.612836899841014 27.66363697625121 27.240921925389188 22.482604198518587 64-65 22.581569621383604 27.54894088987312 27.243153945263348 22.62633554347993 66-67 22.664077770692888 27.587333255642704 27.097856858241915 22.65073211542249 68-69 22.54788920121186 27.564928325536815 27.246026418697888 22.641156054553438 70-71 22.55623191499946 27.341638355954267 27.308791279402378 22.793338449643898 72-73 22.666909839205427 27.429175998086 27.185009851102578 22.718904311605996 74-75 22.495143165303894 27.6130628238577 27.18874863530366 22.703045375534746 76-77 22.61502464090758 27.51893415755584 27.14172930107828 22.724311900458297 78-79 22.556496311110365 27.50807186192293 27.128205300573082 22.807226526393627 80-81 22.570276537127775 27.60735025591406 27.10424185494636 22.71813135201181 82-83 22.654885245267124 27.53137034718734 27.195272351923528 22.618472055622004 84-85 22.71963298683137 27.520426085002164 27.109203351999238 22.650737576167224 86-87 22.537519723424797 27.596909419602035 27.153551225943872 22.7120196310293 88-89 22.620671587855288 27.504476252405674 27.154560153548914 22.720292006190125 90-91 22.645731618032787 27.547074882975714 27.156808413813298 22.650385085178197 92-93 22.686730777362506 27.527187050971797 27.190551676921455 22.59553049474425 94-95 22.512133695051624 27.574899814899155 27.220569405725342 22.692397084323872 96-97 22.564710050245687 27.70043885701565 27.263927057299203 22.470924035439456 98-99 23.708389957126286 29.569211506091214 27.457536761619938 19.26486177516256 100 22.7155353009458 30.57383354740334 21.184825985122707 25.525805166528148 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2214.0 1 1882.5 2 2449.5 3 3555.0 4 4756.5 5 7670.5 6 10155.5 7 11797.5 8 12786.0 9 12473.0 10 11426.0 11 10421.0 12 11249.0 13 14665.5 14 22883.5 15 34672.5 16 44859.0 17 51128.5 18 52447.5 19 49557.0 20 44629.5 21 39350.0 22 36132.0 23 37014.0 24 41876.0 25 50943.0 26 63787.0 27 78410.0 28 94583.5 29 113781.5 30 133887.0 31 153629.0 32 174885.5 33 194710.0 34 215530.5 35 236499.0 36 257894.0 37 277956.5 38 291578.5 39 303498.0 40 316452.5 41 326949.5 42 333750.0 43 342388.5 44 351382.5 45 359199.0 46 363783.5 47 366761.5 48 370002.0 49 368430.5 50 363369.5 51 355593.5 52 344152.5 53 328681.0 54 310240.5 55 289899.0 56 267569.5 57 242827.0 58 216877.0 59 189652.0 60 158750.5 61 128565.5 62 102074.0 63 78380.0 64 58192.5 65 42708.0 66 31684.0 67 23908.0 68 18063.5 69 13229.0 70 9498.5 71 6696.5 72 4517.0 73 2938.5 74 1871.5 75 1211.5 76 850.5 77 582.5 78 391.5 79 282.0 80 219.0 81 174.5 82 127.0 83 81.5 84 56.0 85 40.5 86 29.0 87 21.5 88 13.5 89 8.0 90 4.0 91 3.0 92 3.0 93 2.0 94 0.5 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0013290697975646487 5 0.007490096740512637 6 1.1263303369191937E-5 7 3.378991010757581E-5 8 0.0 9 7.09588112259092E-4 10-11 9.573807863813146E-4 12-13 0.0010925404268116179 14-15 9.799073931196986E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 145.0 20-21 527.0 22-23 1162.0 24-25 2685.0 26-27 3862.0 28-29 6816.0 30-31 16813.0 32-33 21142.0 34-35 28734.0 36-37 41141.0 38-39 50119.0 40-41 52985.0 42-43 63371.0 44-45 74596.0 46-47 72009.0 48-49 65461.0 50-51 58752.0 52-53 57729.0 54-55 62100.0 56-57 64265.0 58-59 63639.0 60-61 63611.0 62-63 62633.0 64-65 66256.0 66-67 70185.0 68-69 70633.0 70-71 70965.0 72-73 68964.0 74-75 71682.0 76-77 69070.0 78-79 74599.0 80-81 76955.0 82-83 75807.0 84-85 76671.0 86-87 80657.0 88-89 86534.0 90-91 91351.0 92-93 96401.0 94-95 119181.0 96-97 306313.0 98-99 548229.0 100-101 5823640.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.16380054353087 #Duplication Level Percentage of deduplicated Percentage of total 1 88.6704229908562 73.74169371722078 2 7.700163530431035 12.807497279946741 3 2.022899209582642 5.0469595915619125 4 0.7248663591608356 2.411305652558686 5 0.3352389388455654 1.393987212228877 6 0.18060696539577142 0.901197698816779 7 0.10020490418353734 0.5833394465502324 8 0.0676520683314098 0.45009624936565484 9 0.04383089123007587 0.3280629146312904 >10 0.14953894320135347 1.9421695484165176 >50 0.003555159038917861 0.1983666017463535 >100 9.240546595691842E-4 0.12821174028475993 >500 7.198916802478506E-5 0.03871507974870389 >1k 2.3995915029938403E-5 0.028397266922754513 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1263303369191937E-5 2 0.0 5.631651684595968E-5 0.0 0.0 1.1263303369191937E-5 3 0.0 5.631651684595968E-5 0.0 0.0 1.1263303369191937E-5 4 0.0 1.238963370611113E-4 0.0 1.1263303369191937E-5 1.1263303369191937E-5 5 0.0 1.3515964043030323E-4 0.0 3.378991010757581E-5 1.1263303369191937E-5 6 0.0 1.3515964043030323E-4 0.0 3.378991010757581E-5 1.1263303369191937E-5 7 0.0 1.4642294379949518E-4 0.0 4.505321347676775E-5 1.1263303369191937E-5 8 0.0 1.576862471686871E-4 0.0 6.757982021515161E-5 1.1263303369191937E-5 9 0.0 2.8158258422979844E-4 0.0 7.884312358434355E-5 2.2526606738383874E-5 10-11 0.0 2.8158258422979844E-4 0.0 9.01064269535355E-5 2.2526606738383874E-5 12-13 0.0 2.8158258422979844E-4 0.0 1.070013820073234E-4 2.815825842297984E-5 14-15 0.0 3.7732066286792987E-4 0.0 1.1263303369191936E-4 3.942156179217178E-5 16-17 0.0 3.8295231455252583E-4 0.0 1.407912921148992E-4 5.631651684595968E-5 18-19 0.0 4.2237387634469763E-4 0.0 1.633178988532831E-4 6.194816853055565E-5 20-21 0.0 4.6179543813686943E-4 0.0 2.0273946064545484E-4 6.757982021515161E-5 22-23 0.0 5.631651684595968E-4 0.0 2.477926741222226E-4 1.0700138200732339E-4 24-25 0.0 6.532715954131324E-4 0.0 3.322674493911621E-4 1.3515964043030323E-4 26-27 0.0 6.870615055207082E-4 0.0 5.406385617212129E-4 1.3515964043030323E-4 28-29 0.0 6.870615055207082E-4 0.0 0.0016669688986404065 1.407912921148992E-4 30-31 0.0 7.20851415628284E-4 0.0 0.005575335167750009 1.4642294379949518E-4 32-33 0.0 7.20851415628284E-4 0.0 0.014039707649697749 1.576862471686871E-4 34-35 0.0 8.109578425818194E-4 0.0 0.02422173389544726 1.576862471686871E-4 36-37 0.0 8.89800966166163E-4 0.0 0.0392469805899493 1.576862471686871E-4 38-39 0.0 9.066959212199509E-4 0.0 0.06264649333944555 1.80212853907071E-4 40-41 5.6316516845959684E-6 9.911706964888904E-4 0.0 0.0808874131458519 2.0273946064545487E-4 42-43 1.1263303369191937E-5 0.0010136973032272743 0.0 0.09787247462659333 2.0837111233005083E-4 44-45 1.1263303369191937E-5 0.0011657518987113653 0.0 0.11505464391629563 2.1963441569924276E-4 46-47 1.1263303369191937E-5 0.0012840165840878807 0.0 0.12977014976814488 2.4216102243762664E-4 48-49 1.1263303369191937E-5 0.0012896482357724766 0.0 0.14171488299117296 2.5905597749141453E-4 50-51 1.1263303369191937E-5 0.00142480787620278 0.0 0.14967803847319164 2.759509325452025E-4 52-53 1.1263303369191937E-5 0.001441702831256568 0.0 0.15693723749463584 3.041091909681823E-4 54-55 1.1263303369191937E-5 0.0014529661346257597 0.0 0.16353753326898232 3.2663579770656615E-4 56-57 1.1263303369191937E-5 0.0014867560447333356 0.0 0.16856096657164193 3.322674493911621E-4 58-59 1.1263303369191937E-5 0.0014980193481025277 0.0 0.17353934666082477 3.378991010757581E-4 60-61 1.1263303369191937E-5 0.0015374409098946992 0.0 0.1784050937163157 3.60425707814142E-4 62-63 1.1263303369191937E-5 0.0015599675166330833 0.0 0.1835411600526672 3.7732066286792987E-4 64-65 1.1263303369191937E-5 0.0017232854154863664 0.0 0.18853080344521922 3.8295231455252583E-4 66-67 1.1263303369191937E-5 0.0017232854154863664 0.0 0.1935823950063018 3.8295231455252583E-4 68-69 1.1263303369191937E-5 0.001785233584016922 0.0 0.19870719803928416 3.998472696063138E-4 70-71 1.1263303369191937E-5 0.0018246551458090939 0.0 0.20348283866782152 4.3363717971388956E-4 72-73 1.1263303369191937E-5 0.0018302867974936898 0.0 0.2070364108808016 4.6179543813686943E-4 74-75 1.1263303369191937E-5 0.0019147615727626295 0.0 0.21030276885786725 4.674270898214654E-4 76-77 1.1263303369191937E-5 0.0019992363480315686 0.0 0.21332696581249527 4.786903931906573E-4 78-79 1.1263303369191937E-5 0.0020161313030853567 0.0 0.21529804390210389 4.843220448752533E-4 80-81 1.1263303369191937E-5 0.0020161313030853567 0.0 0.21601889531773216 4.955853482444452E-4 82-83 1.1263303369191937E-5 0.002033026258139145 0.0 0.21654827057608417 5.35006910036617E-4 84-85 1.1263303369191937E-5 0.0020668161682467203 0.0 0.21674537838504504 5.631651684595969E-4 86-87 1.1263303369191937E-5 0.002106237730038892 0.0 0.21685237976705235 5.631651684595969E-4 88 1.1263303369191937E-5 0.0022301340671000034 0.0 0.21686364307042155 5.631651684595969E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11240 0.0 49.394203 1 GTATCAA 20865 0.0 37.584553 1 TCAACGC 25290 0.0 30.229948 4 ATCAACG 25435 0.0 30.057613 3 TATCAAC 26140 0.0 29.574299 2 CAACGCA 25995 0.0 29.47596 5 AACGCAG 26725 0.0 28.669525 6 ACGCAGA 30740 0.0 24.88374 7 CGCAGAG 31695 0.0 24.161253 8 GTGGTAT 5610 0.0 23.04339 1 GTACATG 28220 0.0 22.191652 1 TGGTATC 5350 0.0 22.082975 2 TACATGG 28360 0.0 21.553822 2 GCAGAGT 36755 0.0 20.718903 9 ACATGGG 28770 0.0 20.621874 3 GAGTACT 21235 0.0 18.988523 12-13 CATGGGG 21535 0.0 18.7444 4 CAGAGTA 35780 0.0 18.316378 10-11 AGAGTAC 33220 0.0 18.246029 10-11 GTACTTT 23765 0.0 16.795958 14-15 >>END_MODULE