##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139543_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12916992 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50742022600927 33.0 33.0 33.0 33.0 33.0 2 32.506536506332125 33.0 33.0 33.0 33.0 33.0 3 32.50951397972531 33.0 33.0 33.0 33.0 33.0 4 36.39491338231068 37.0 37.0 37.0 37.0 37.0 5 36.41375422389361 37.0 37.0 37.0 37.0 37.0 6 36.40901898832174 37.0 37.0 37.0 37.0 37.0 7 36.38117488963375 37.0 37.0 37.0 37.0 37.0 8 36.366009361931944 37.0 37.0 37.0 37.0 37.0 9 36.41408797032622 37.0 37.0 37.0 37.0 37.0 10-11 36.350557970462475 37.0 37.0 37.0 37.0 37.0 12-13 36.33131955179658 37.0 37.0 37.0 35.0 37.0 14-15 38.226921561924016 40.0 37.0 40.0 37.0 40.0 16-17 38.173438986414176 40.0 37.0 40.0 33.0 40.0 18-19 38.16944463540737 40.0 37.0 40.0 33.0 40.0 20-21 38.16475650256879 40.0 37.0 40.0 33.0 40.0 22-23 38.17108521365107 40.0 37.0 40.0 33.0 40.0 24-25 38.149993691354425 40.0 37.0 40.0 33.0 40.0 26-27 38.01160009825909 40.0 37.0 40.0 33.0 40.0 28-29 37.940704190577925 40.0 37.0 40.0 33.0 40.0 30-31 37.88264494699573 40.0 37.0 40.0 33.0 40.0 32-33 37.817880686637615 40.0 37.0 40.0 33.0 40.0 34-35 37.76341137991311 40.0 37.0 40.0 33.0 40.0 36-37 37.701834670606445 40.0 37.0 40.0 33.0 40.0 38-39 37.637757932326814 40.0 37.0 40.0 33.0 40.0 40-41 37.613995105552505 40.0 37.0 40.0 33.0 40.0 42-43 37.552149724211034 40.0 37.0 40.0 33.0 40.0 44-45 37.46495222870048 40.0 37.0 40.0 33.0 40.0 46-47 37.415394479111484 40.0 37.0 40.0 33.0 40.0 48-49 37.41419485088444 40.0 37.0 40.0 33.0 40.0 50-51 37.30440427699331 40.0 37.0 40.0 33.0 40.0 52-53 37.17433944821009 40.0 37.0 40.0 33.0 40.0 54-55 37.03420076811608 37.0 37.0 40.0 33.0 40.0 56-57 36.90944071593299 37.0 37.0 40.0 33.0 40.0 58-59 36.76794590645188 37.0 37.0 40.0 33.0 40.0 60-61 36.597574941845195 37.0 37.0 40.0 33.0 40.0 62-63 36.407383229517805 37.0 37.0 40.0 33.0 40.0 64-65 36.24355344675331 37.0 37.0 40.0 33.0 40.0 66-67 36.01403937137712 37.0 37.0 40.0 33.0 40.0 68-69 35.81683669665978 37.0 33.0 38.5 33.0 40.0 70-71 35.562976668517564 37.0 33.0 37.0 33.0 40.0 72-73 35.35383903176023 37.0 33.0 37.0 33.0 40.0 74-75 35.15468722123211 37.0 33.0 37.0 33.0 40.0 76-77 33.353157555097404 35.0 33.0 37.0 27.0 37.0 78-79 34.634433992020604 37.0 33.0 37.0 27.0 37.0 80-81 34.74064603087895 37.0 33.0 37.0 33.0 37.0 82-83 34.60401883226472 37.0 33.0 37.0 30.0 37.0 84-85 34.44816351993362 37.0 33.0 37.0 27.0 37.0 86-87 34.316578029580526 37.0 33.0 37.0 27.0 37.0 88-89 34.19570302699697 37.0 33.0 37.0 27.0 37.0 90-91 34.13547270648512 37.0 33.0 37.0 27.0 37.0 92-93 34.100090029610925 37.0 33.0 37.0 27.0 37.0 94-95 34.1205668889759 37.0 33.0 37.0 27.0 37.0 96-97 34.08696157072566 37.0 33.0 37.0 27.0 37.0 98-99 34.12256377020326 37.0 33.0 37.0 27.0 37.0 100 34.13352518410993 37.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 28.0 20 127.0 21 683.0 22 2652.0 23 7490.0 24 17182.0 25 33040.0 26 57029.0 27 90446.0 28 132221.0 29 182942.0 30 244154.0 31 321718.0 32 419289.0 33 553372.0 34 742454.0 35 1049476.0 36 1738324.0 37 3641186.0 38 3596890.0 39 86288.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.44415356144836 20.207576191113226 14.247047609846009 24.101222637592407 2 14.792174524842935 20.6870608884793 41.670506569950646 22.850258016727114 3 18.39679083179737 25.785074419803 30.137589308718315 25.680545439681314 4 12.725418902613924 17.79070411096879 38.132608075461505 31.35126891095578 5 13.71737304591326 37.45299631279262 35.27687502206564 13.55275561922848 6 30.654710730915806 37.190933148728874 18.4698413027744 13.684514817580911 7 26.967261418138218 32.28650292575856 22.664316893592567 18.08191876251065 8 24.51288194650891 36.8348373986761 20.854940531046235 17.797340123768755 9 25.48080436662183 16.955397024176705 20.999278774095572 36.5645198351059 10-11 24.532795349835723 26.55843591295326 28.50758352812371 20.401185209087306 12-13 25.266163233363955 24.00863802702186 28.64705245017966 22.078146289434525 14-15 22.376089632330835 25.443325725445437 26.114909377722462 26.065675264501266 16-17 22.106690938571457 28.611641936450837 26.838458210704164 22.44320891427354 18-19 22.1450899714113 27.6984223571556 28.418806793408248 21.737680878024854 20-21 22.858711269067882 26.890588353882837 28.361442093105826 21.889258283943455 22-23 22.652769835190078 26.97481635782324 28.1640830480583 22.208330758928383 24-25 22.474205687739264 27.114061060704092 28.23403776673741 22.177695484819235 26-27 22.39402121781483 27.28179781781066 28.178255704109635 22.145925260264875 28-29 22.269131101462726 27.1801594312869 28.239474691855555 22.311234775394823 30-31 22.68830923978163 27.126952995689408 28.10689063852466 22.0778471260043 32-33 22.466499025824586 27.251687053023797 28.134089675108072 22.14772424604355 34-35 22.523832441427903 27.248714738175035 28.16354817056283 22.063904649834235 36-37 22.526119389871358 27.148010591849463 28.059919471641496 22.26595054663768 38-39 22.324033410755025 27.191832337496102 28.185608317233168 22.298525934515702 40-41 22.56597669460685 27.020766922627963 28.139423430159756 22.27383295260543 42-43 22.497505194162386 27.084577700004065 27.970363472953487 22.447553632880062 44-45 22.46587594840179 27.252391861042597 27.816780875489872 22.46495131506574 46-47 22.64612137938754 27.17590451551454 27.512228380168057 22.665745724929867 48-49 22.500200849596826 27.29013723960967 27.509598023033476 22.70006388776003 50-51 22.463418601198036 27.42095643543465 27.47826216498189 22.63736279838543 52-53 22.6057399187514 27.364830993273582 27.444678657162402 22.584750430812615 54-55 22.596563528927952 27.30341050485186 27.356553933289224 22.743472032930967 56-57 22.611952510859403 27.45013945128352 27.268100925934952 22.669807111922125 58-59 22.51159908325036 27.50436599696649 27.403208540145457 22.580826379637696 60-61 22.65259798032268 27.600067097010587 27.216644171077824 22.530690751588907 62-63 22.574217922616096 27.69730365429232 27.14287983985002 22.585598583241566 64-65 22.57845491188761 27.620988247882934 27.084776967005592 22.715779873223866 66-67 22.64725646783419 27.599937307399518 26.971852250632356 22.78095397413394 68-69 22.581820974688714 27.515677238495357 27.07911299178154 22.82338879503439 70-71 22.622415356489817 27.330844771613755 27.124605748034536 22.922134123861895 72-73 22.700213163834494 27.34901784907858 27.013161342909914 22.937607644177014 74-75 22.621692760616924 27.512743820828355 26.989081819279708 22.876481599275017 76-77 22.742849212772246 27.438496733196992 26.933445563903057 22.88520849012771 78-79 22.67517573695652 27.412771181498062 26.903521399103763 23.008531682441657 80-81 22.70740257227836 27.50305210446805 26.906925144701194 22.882620178552397 82-83 22.76914424506117 27.46031335795526 26.98792322983863 22.782619167144937 84-85 22.81754009755398 27.45262071875697 26.943749633380737 22.786089550308304 86-87 22.66472151331117 27.493350137087713 27.05152354114217 22.790404808458945 88-89 22.745020224094766 27.44047240256969 27.027085231444044 22.787422141891504 90-91 22.754947374859157 27.509103871825662 26.99490541103354 22.741043342281635 92-93 22.78630716021717 27.442316001785834 27.07799732564295 22.69337951235405 94-95 22.636562890965408 27.50160218380427 27.13615174782329 22.72568317740704 96-97 22.71689507179582 27.596446164016502 27.175048544292913 22.511610219894767 98-99 23.862524363950268 29.463304912153383 27.351172631529824 19.322998092366525 100 22.7719224594899 30.436370839233817 21.17386895452758 25.617837746748695 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2766.0 1 2384.0 2 2967.0 3 4111.5 4 5453.5 5 8892.5 6 11887.5 7 13936.5 8 15306.0 9 15176.5 10 14045.0 11 12631.0 12 13298.0 13 17377.0 14 27204.5 15 41124.0 16 53098.0 17 60833.5 18 63463.0 19 61091.5 20 55959.5 21 50647.0 22 47445.0 23 48866.5 24 55592.5 25 68084.0 26 86074.0 27 107043.0 28 131041.0 29 158444.0 30 185855.0 31 213675.0 32 243944.0 33 273425.5 34 302724.0 35 330173.5 36 360239.0 37 390345.0 38 414317.0 39 435696.5 40 452789.5 41 467494.5 42 479164.0 43 489419.5 44 500560.0 45 512881.0 46 520828.5 47 525078.0 48 537691.5 49 542217.0 50 533564.5 51 525189.5 52 513221.5 53 493241.0 54 467342.0 55 437468.5 56 404715.5 57 368694.5 58 329105.0 59 286379.0 60 240005.0 61 195551.5 62 155491.0 63 119363.0 64 88748.5 65 65376.5 66 48252.0 67 36171.5 68 27372.5 69 19573.5 70 13620.5 71 9682.5 72 6697.5 73 4508.0 74 2947.0 75 1957.0 76 1299.5 77 833.0 78 547.5 79 393.5 80 286.0 81 199.0 82 135.0 83 82.5 84 55.0 85 44.0 86 40.5 87 34.5 88 24.5 89 16.0 90 10.5 91 8.0 92 6.5 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0016025402818241274 5 0.0076178726440335335 6 3.870870245951999E-5 7 0.0 8 0.0 9 7.432070872227838E-4 10-11 8.903001565689597E-4 12-13 0.0011883571655072636 14-15 0.0010451349664070398 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 236.0 20-21 786.0 22-23 1726.0 24-25 4001.0 26-27 5662.0 28-29 8740.0 30-31 19779.0 32-33 25181.0 34-35 35272.0 36-37 50531.0 38-39 57632.0 40-41 64246.0 42-43 75905.0 44-45 90612.0 46-47 89202.0 48-49 83773.0 50-51 73131.0 52-53 71987.0 54-55 82468.0 56-57 90913.0 58-59 94026.0 60-61 97150.0 62-63 98024.0 64-65 106081.0 66-67 111934.0 68-69 107321.0 70-71 106854.0 72-73 104380.0 74-75 108706.0 76-77 105983.0 78-79 116671.0 80-81 119515.0 82-83 117824.0 84-85 120324.0 86-87 127962.0 88-89 137288.0 90-91 143476.0 92-93 151716.0 94-95 186163.0 96-97 462631.0 98-99 804955.0 100-101 8456225.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.27163627599475 #Duplication Level Percentage of deduplicated Percentage of total 1 88.50504142374682 73.69959618030094 2 7.912305436940825 13.177412408990241 3 1.960477677693713 4.897565523123531 4 0.7646246094530275 2.5468616946418816 5 0.3302769318508314 1.375135026971697 6 0.18022644369449312 0.9004650519986328 7 0.10103175024784783 0.5889155411276148 8 0.06257266241212361 0.4168422388162373 9 0.04452082543093583 0.3336589783792751 >10 0.13504966549080655 1.7526509076903483 >50 0.0029597722426504976 0.16649402076224248 >100 8.798200588343397E-4 0.11987751473710062 >500 1.6490673746358342E-5 0.010051863426638843 >1k 1.6490063347837155E-5 0.01447304903361745 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.096696196761599E-5 0.0 1.5483480983807996E-5 0.0 3 0.0 3.096696196761599E-5 0.0 2.3225221475711992E-5 0.0 4 0.0 1.0838436688665597E-4 0.0 6.193392393523198E-5 7.741740491903998E-6 5 0.0 1.1612610737855996E-4 0.0 6.193392393523198E-5 7.741740491903998E-6 6 0.0 1.1612610737855996E-4 0.0 6.193392393523198E-5 1.5483480983807996E-5 7 0.0 1.1612610737855996E-4 0.0 6.193392393523198E-5 1.5483480983807996E-5 8 0.0 1.2386784787046397E-4 0.0 6.193392393523198E-5 1.5483480983807996E-5 9 0.0 2.1676873377331194E-4 0.0 7.741740491903997E-5 1.5483480983807996E-5 10-11 0.0 2.1676873377331194E-4 0.0 1.3160958836236795E-4 1.5483480983807996E-5 12-13 0.0 2.1676873377331194E-4 0.0 1.3935132885427195E-4 1.5483480983807996E-5 14-15 0.0 2.9418613869235187E-4 0.0 1.7418916106783994E-4 2.3225221475711992E-5 16-17 0.0 3.096696196761599E-4 0.0 2.0902699328140793E-4 3.8708702459519985E-5 18-19 0.0 3.4450745188972787E-4 0.0 2.283813445111679E-4 4.6450442951423985E-5 20-21 0.0 3.9482876508710387E-4 0.0 2.554774362328319E-4 5.4192183443327984E-5 22-23 0.0 4.2966659730067186E-4 0.0 3.174113601680639E-4 7.741740491903998E-5 24-25 3.870870245951999E-6 4.7611704025209584E-4 0.0 4.025705055790079E-4 1.0064262639475196E-4 26-27 7.741740491903998E-6 5.148257427116158E-4 0.0 6.967566442713598E-4 1.0064262639475196E-4 28-29 7.741740491903998E-6 5.186966129575679E-4 0.0 0.002078657322076223 1.0064262639475196E-4 30-31 7.741740491903998E-6 6.309518500901758E-4 0.0 0.007203689527716669 1.0064262639475196E-4 32-33 1.5483480983807996E-5 6.464353310739838E-4 0.0 0.019276933824840956 1.0064262639475196E-4 34-35 1.9354351229759996E-5 7.432070872227838E-4 0.0 0.0347642856788949 1.1225523713260797E-4 36-37 2.3225221475711992E-5 8.438497136175358E-4 0.0 0.05817143805616664 1.1612610737855996E-4 38-39 2.3225221475711992E-5 8.709458053391998E-4 0.0 0.10775728590681173 1.1612610737855996E-4 40-41 3.096696196761599E-5 9.832010424718077E-4 0.0 0.15819859608181225 1.1612610737855996E-4 42-43 3.096696196761599E-5 0.0010064262639475196 0.0 0.19839758358602375 1.1612610737855996E-4 44-45 3.096696196761599E-5 0.0011690028142775036 0.0 0.24720151564698656 1.2386784787046394E-4 46-47 3.096696196761599E-5 0.0013044832728858237 0.0 0.2952428862694968 1.4322219910022397E-4 48-49 3.096696196761599E-5 0.0013083541431317756 0.0 0.3393862905543334 1.5483480983807994E-4 50-51 3.096696196761599E-5 0.0014283511207562876 0.0 0.3765621283964564 1.5483480983807994E-4 52-53 3.096696196761599E-5 0.0014399637314941435 0.0 0.4404701961571239 1.7418916106783994E-4 54-55 3.096696196761599E-5 0.0014515763422319997 0.0 0.5048621226985354 1.9741438254355193E-4 56-57 3.096696196761599E-5 0.0014631889529698556 0.0 0.5653405994212894 2.0128525278950392E-4 58-59 3.096696196761599E-5 0.0014709306934617594 0.0 0.6038712418494956 2.0128525278950392E-4 60-61 3.096696196761599E-5 0.0014902850446915196 0.0 0.629887360772539 2.0902699328140793E-4 62-63 3.096696196761599E-5 0.0015212520066591355 0.0 0.6504184565570683 2.2451047426521592E-4 64-65 3.096696196761599E-5 0.0016876994272350715 0.0 0.6567163624472323 2.2451047426521592E-4 66-67 3.096696196761599E-5 0.0016993120379729275 0.0 0.6623213825633708 2.2451047426521592E-4 68-69 3.096696196761599E-5 0.0017341498701864953 0.0 0.6679186609390174 2.2451047426521592E-4 70-71 3.096696196761599E-5 0.0017651168321541114 0.0 0.6727456361357195 2.3225221475711992E-4 72-73 3.096696196761599E-5 0.0017922129238757754 0.0 0.6767713411915095 2.7096091721663993E-4 74-75 3.096696196761599E-5 0.0018618885883029115 0.0 0.6799183587014686 2.7096091721663993E-4 76-77 3.096696196761599E-5 0.0019199516419921912 0.0 0.6833208536476604 2.7096091721663993E-4 78-79 3.096696196761599E-5 0.0019393059932219514 0.0 0.6854769283746557 2.7096091721663993E-4 80-81 3.096696196761599E-5 0.0019547894742057595 0.0 0.686181426759419 2.787026577085439E-4 82-83 3.096696196761599E-5 0.0019664020849436154 0.0 0.6868394747012307 2.941861386923519E-4 84-85 3.096696196761599E-5 0.0019818855659274235 0.0 0.6870872103969716 2.941861386923519E-4 86-87 3.096696196761599E-5 0.002012852527895039 0.0 0.6872110782448422 2.941861386923519E-4 88 3.096696196761599E-5 0.0020902699328140795 0.0 0.6872188199853341 2.941861386923519E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14485 0.0 49.945286 1 GTATCAA 26310 0.0 37.11009 1 TCAACGC 32170 0.0 29.749134 4 ATCAACG 32305 0.0 29.584873 3 CAACGCA 32945 0.0 29.0097 5 TATCAAC 33430 0.0 28.78171 2 AACGCAG 33970 0.0 28.208485 6 ACGCAGA 39345 0.0 24.333662 7 CGCAGAG 40500 0.0 23.629356 8 GTACATG 37745 0.0 21.913254 1 TACATGG 38095 0.0 21.249006 2 ACATGGG 38815 0.0 20.445238 3 GCAGAGT 47360 0.0 20.061695 9 GTGGTAT 7990 0.0 19.48717 1 TGGTATC 7655 0.0 18.822903 2 GAGTACT 27310 0.0 18.599304 12-13 CAGAGTA 46460 0.0 17.880957 10-11 CATGGGG 28760 0.0 17.782318 4 AGAGTAC 42920 0.0 17.762403 10-11 GTACTTT 29850 0.0 16.95158 14-15 >>END_MODULE