##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139538_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21031939 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.42382126536217 31.0 31.0 34.0 30.0 34.0 2 31.585759544091488 31.0 31.0 34.0 30.0 34.0 3 31.63479734322166 31.0 31.0 34.0 30.0 34.0 4 35.43047742768748 37.0 35.0 37.0 33.0 37.0 5 35.24090722210634 37.0 35.0 37.0 32.0 37.0 6 35.23270921430497 37.0 35.0 37.0 32.0 37.0 7 35.143005312063714 37.0 35.0 37.0 32.0 37.0 8 35.0751965379892 37.0 35.0 37.0 32.0 37.0 9 36.61845662447005 39.0 35.0 39.0 32.0 39.0 10-11 36.553235248542705 39.0 35.0 39.0 32.0 39.0 12-13 36.50422571594564 38.0 35.0 39.0 32.0 39.0 14-15 37.58359875901124 39.0 36.0 41.0 32.0 41.0 16-17 37.54827331897454 39.0 36.0 41.0 32.0 41.0 18-19 37.559875197431865 39.0 36.0 41.0 32.0 41.0 20-21 37.52897291495068 39.0 36.0 41.0 32.0 41.0 22-23 37.44595719443916 39.0 36.0 41.0 32.0 41.0 24-25 37.31987967734123 39.0 36.0 41.0 31.0 41.0 26-27 37.07660424448327 39.0 36.0 40.5 31.0 41.0 28-29 36.911525840222396 39.0 36.0 40.0 30.5 41.0 30-31 36.73706139543562 38.5 35.5 40.0 30.0 41.0 32-33 36.504813097666826 38.0 35.0 40.0 30.0 41.0 34-35 36.34059159164416 38.0 35.0 40.0 30.0 41.0 36-37 36.17517085716128 38.0 35.0 40.0 30.0 41.0 38-39 35.99515772250068 38.0 34.0 40.0 29.5 41.0 40-41 35.824043925959224 38.0 34.0 40.0 29.0 41.0 42-43 35.6051278600468 38.0 34.0 40.0 28.0 41.0 44-45 36.0495303456178 38.0 34.5 40.0 29.5 41.0 46-47 36.305644205177344 38.0 35.0 40.0 30.0 41.0 48-49 36.35572423097554 38.0 35.0 40.0 30.0 41.0 50-51 36.27216028460627 38.0 35.0 40.0 29.0 41.0 52-53 36.13157890758939 38.0 34.0 40.0 29.0 41.0 54-55 35.99312899044937 38.0 34.0 40.0 28.5 41.0 56-57 35.86065846699749 38.0 34.0 40.0 28.0 41.0 58-59 35.67267866991439 38.0 34.0 40.0 28.0 41.0 60-61 35.479700452125925 37.5 33.5 40.0 28.0 41.0 62-63 35.24928917868593 37.0 33.0 40.0 28.0 41.0 64-65 34.983415092661645 37.0 33.0 39.5 27.5 41.0 66-67 34.677208743634885 36.0 32.5 39.0 26.5 41.0 68-69 34.401685287318394 36.0 32.0 39.0 26.0 40.0 70-71 34.11211532578017 35.0 32.0 39.0 26.0 40.0 72-73 33.80479605882897 35.0 31.5 38.0 26.0 40.0 74-75 33.47039827336752 35.0 31.0 37.5 26.0 39.5 76-77 31.780687446373165 33.5 29.5 35.5 25.0 38.5 78-79 32.80185438547278 34.0 31.0 36.0 26.0 39.0 80-81 32.87806647639015 34.0 31.0 36.0 26.0 38.5 82-83 32.654031018526965 34.0 31.0 36.0 26.0 37.5 84-85 32.41846904972815 34.0 31.0 35.0 26.0 37.0 86-87 32.215625230220574 34.0 31.0 35.0 26.0 36.5 88-89 32.01017466883181 34.0 31.0 35.0 25.5 36.0 90-91 31.863526393041777 34.0 31.0 35.0 25.0 36.0 92-93 31.83275214398043 34.0 31.0 35.0 25.0 35.5 94-95 31.828547261404292 34.0 31.0 35.0 25.5 35.0 96-97 31.946448237206706 34.0 31.0 35.0 26.0 35.0 98-99 32.172984153494184 34.0 31.0 35.0 26.5 35.0 100 30.230694785192103 32.0 28.0 34.0 23.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 6.0 19 35.0 20 318.0 21 2015.0 22 9668.0 23 32055.0 24 79428.0 25 159781.0 26 273733.0 27 410944.0 28 558292.0 29 704909.0 30 851760.0 31 1006825.0 32 1186843.0 33 1411925.0 34 1719035.0 35 2137241.0 36 2758722.0 37 3464150.0 38 3076419.0 39 1158261.0 40 29573.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.516099775679265 21.814488906610087 15.201584599498885 23.46782671821176 2 14.365882416280568 22.595268049707915 41.00460607011503 22.03424346389649 3 17.30016117868744 28.053293427039076 31.474400099239553 23.17214529503393 4 12.436766926527321 19.62166256583507 39.60508965589578 28.336480851741825 5 12.453844602725407 38.69351275695503 36.43312202455513 12.419520615764434 6 28.28030739343624 39.74769991487708 19.393704023200144 12.578288668486534 7 24.960751360109974 33.373546775691956 24.732032552966228 16.933669311231835 8 23.776287016782543 37.33132121647708 21.895231308725936 16.997160458014445 9 25.29891799324827 16.828971403920484 21.853757753861878 36.01835284896937 10-11 23.481228737097716 27.236111311864015 29.843893115688445 19.43876683534982 12-13 24.48496264321267 24.890284629730207 29.778159588941023 20.846593138116106 14-15 21.690017812488694 26.07047170739382 27.263663107893432 24.975847372224052 16-17 21.21823086077708 29.15994153617782 27.9033925277948 21.7184350752503 18-19 21.302250249656083 28.428773047156437 29.483115032745683 20.7858616704418 20-21 22.08141310818753 27.62042973735314 29.320601677942342 20.977555476516983 22-23 21.848576201054154 27.558971424054807 29.17781399243481 21.414638382456232 24-25 21.671209931671186 27.755832460854542 29.14712965975278 21.425827947721494 26-27 21.635804138842808 27.833541393223864 29.072444802922092 21.45820966501124 28-29 21.621767555917156 27.772619698165762 29.124403090992406 21.481209654924672 30-31 21.829854121317474 27.74586679610087 28.979689190011666 21.444589892569994 32-33 21.67959826198747 27.88782545898804 28.93284718605719 21.4997290929673 34-35 21.770323567475312 27.901804597356456 28.94361501935847 21.384256815809763 36-37 21.786617205731996 27.845598547358165 28.850049391391362 21.51773485551848 38-39 21.67174086254122 27.90537561941156 28.85965290362085 21.56323061442637 40-41 21.87561021336807 27.828131500627958 28.749292079486455 21.54696620651752 42-43 21.752502869679212 27.951411804743074 28.5405955931695 21.75548973240822 44-45 21.802304268320665 28.030266394653353 28.41780110500323 21.749628232022754 46-47 21.90863073748275 28.014784032044286 28.195146389819918 21.88143884065304 48-49 21.81996059279777 28.13598128282398 28.14438468496184 21.89967343941641 50-51 21.861596209963363 28.24369991359193 27.99289463223953 21.901809244205175 52-53 21.98135053758607 28.14661245619195 27.945168532093934 21.926868474128046 54-55 21.943209576891533 28.08167183320972 28.038239329378477 21.93687926052027 56-57 21.872555277732893 28.130331369177718 28.03854973718551 21.958563615903877 58-59 21.845870174879863 28.16312475853658 28.025785632704974 21.965219433878584 60-61 21.9389785061921 28.180636590138104 28.022005206923872 21.85837969674592 62-63 21.843284974701024 28.287483271752055 28.019295467511213 21.849936286035714 64-65 21.801459336520953 28.25485922056948 27.95411395246582 21.98956749044375 66-67 21.892861234405032 28.283188061030422 27.82513062533896 21.998820079225585 68-69 21.82654667274118 28.26364200628597 27.88832035067237 22.021490970300484 70-71 21.843271420784827 28.07236721229999 27.968667489344263 22.11569387757092 72-73 21.89239581691933 28.07938490750618 27.83637846077453 22.19184081479996 74-75 21.831301290175467 28.183483677629685 27.858591291237083 22.126623740957772 76-77 21.930635861880468 28.111482706899427 27.87755458291573 22.080326848304374 78-79 21.871035187911207 28.081624820412067 27.836280880361148 22.21105911131558 80-81 21.898543232433063 28.127405738368516 27.812312788128658 22.161738241069763 82-83 21.9203536326988 28.106748869258684 27.928178279481024 22.04471921856149 84-85 21.90998650114587 28.110937961071603 27.953424321034298 22.02565121674823 86-87 21.83768008057182 28.10361469882503 28.01678604441184 22.041919176191307 88-89 21.89071412161298 28.078262659203535 28.021845006357076 22.00917821282641 90-91 21.87973711845021 28.084670510841086 28.088626296862234 21.946966073846472 92-93 21.924508605533024 27.998451712946732 28.15132085503801 21.925718826482235 94-95 21.692482173412518 28.003759145668845 28.33028033458734 21.9734783463313 96-97 21.69315101930189 28.145342275804875 28.46484474775462 21.696661957138613 98-99 22.731748985071153 30.02394017211151 28.813933136282238 18.430377706535104 100 22.378097443013697 30.42655548121413 22.580194521157697 24.615152554614475 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4082.0 1 3728.0 2 5804.0 3 8602.5 4 11018.0 5 17546.0 6 23605.5 7 28482.0 8 32179.0 9 32021.0 10 28613.5 11 24507.0 12 25194.0 13 32503.0 14 50385.5 15 78748.0 16 103702.0 17 117970.0 18 123576.0 19 121417.0 20 116162.0 21 112107.5 22 110431.0 23 117591.0 24 138205.5 25 169780.5 26 210332.5 27 253732.0 28 301383.5 29 356221.5 30 409757.0 31 460848.0 32 513600.5 33 561659.0 34 605716.5 35 647544.0 36 690598.5 37 731363.5 38 762966.0 39 789395.5 40 810887.5 41 826255.5 42 834385.0 43 838378.5 44 843899.5 45 851217.0 46 851144.0 47 846060.5 48 840646.0 49 827099.5 50 806788.5 51 779265.5 52 742545.5 53 698580.5 54 650923.5 55 602683.0 56 552618.0 57 499298.0 58 443106.0 59 382609.5 60 320543.5 61 262651.0 62 210345.0 63 164614.5 64 124763.5 65 94830.0 66 72933.0 67 56023.5 68 43166.0 69 32414.5 70 23898.5 71 17490.5 72 12552.5 73 8869.5 74 6307.5 75 4389.5 76 3025.5 77 2117.5 78 1447.0 79 1006.0 80 716.5 81 519.5 82 392.5 83 280.0 84 207.5 85 166.5 86 132.5 87 104.0 88 67.5 89 34.5 90 23.0 91 20.0 92 14.5 93 8.5 94 5.0 95 4.0 96 4.0 97 3.5 98 2.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11725024497265801 3 9.50934671311095E-6 4 1.2362150727044234E-4 5 0.0 6 0.0 7 0.0 8 1.2362150727044234E-4 9 0.0 10-11 1.4264020069666424E-5 12-13 8.558412041799856E-5 14-15 3.1380844153266135E-4 16-17 6.133528629956563E-4 18-19 2.852804013933285E-5 20-21 6.181488600407797E-5 22-23 4.7557693664915725E-6 24-25 0.006058535442896186 26-27 3.570071774150976E-5 28-29 0.0021602572683010945 30-31 0.001993750688630994 32-33 0.02291856843102358 34-35 0.015607939676463614 36-37 0.008096688269224486 38-39 0.004010047854527654 40-41 9.39342562414568E-4 42-43 3.4058449984749657E-4 44-45 0.0010254881496566271 46-47 0.0016759284993037914 48-49 0.0012324502542205322 50-51 5.32521925449162E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 6.0149249640725914E-5 60-61 0.0 62-63 0.0 64-65 2.692413317753235E-6 66-67 0.0 68-69 1.1561049733406321E-4 70-71 5.042461706403587E-4 72-73 5.640752382731367E-6 74-75 5.9962174147342874E-5 76-77 2.9777943275041804E-4 78-79 1.7849761019498756E-4 80-81 2.3732904669609193E-5 82-83 9.033162818333551E-6 84-85 3.057567264951045E-6 86-87 1.3053184641399182E-4 88-89 4.7486716461659647E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 847.0 20-21 2829.0 22-23 5637.0 24-25 11317.0 26-27 13618.0 28-29 22073.0 30-31 43421.0 32-33 54043.0 34-35 75229.0 36-37 101581.0 38-39 121512.0 40-41 136443.0 42-43 159987.0 44-45 190737.0 46-47 172303.0 48-49 164037.0 50-51 146787.0 52-53 136190.0 54-55 146088.0 56-57 164359.0 58-59 177688.0 60-61 184092.0 62-63 183503.0 64-65 191761.0 66-67 208319.0 68-69 214634.0 70-71 220601.0 72-73 216584.0 74-75 222689.0 76-77 200093.0 78-79 227757.0 80-81 246718.0 82-83 251698.0 84-85 259733.0 86-87 284361.0 88-89 324254.0 90-91 366932.0 92-93 426331.0 94-95 534267.0 96-97 1031648.0 98-99 1700205.0 100-101 1.1489033E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.54310844649885 #Duplication Level Percentage of deduplicated Percentage of total 1 88.99657480060694 74.35050499934053 2 7.478542061745419 12.495613009722014 3 1.8817091811862692 4.716115025658511 4 0.759306783628054 2.53739395875203 5 0.3353740126036193 1.400909375254082 6 0.17678763813281428 0.8861633294718056 7 0.1132313991845395 0.6621792143135949 8 0.06403804369494552 0.4279949783286772 9 0.043461827374058265 0.3267842541834565 >10 0.14689965422151371 1.8772210411111094 >50 0.003203586746353566 0.1787839297228883 >100 8.18303973352299E-4 0.10809155345598129 >500 4.2200723408525393E-5 0.022967842752446167 >1k 1.0506178628549212E-5 0.009277487932929963 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.754673356555475E-6 2 0.0 1.90186934262219E-5 0.0 0.0 9.50934671311095E-6 3 0.0 1.90186934262219E-5 0.0 4.754673356555475E-6 1.4264020069666424E-5 4 0.0 5.2301406922110224E-5 0.0 2.852804013933285E-5 1.4264020069666424E-5 5 0.0 5.2301406922110224E-5 0.0 3.3282713495888325E-5 1.4264020069666424E-5 6 0.0 5.2301406922110224E-5 0.0 3.3282713495888325E-5 1.90186934262219E-5 7 4.754673356555475E-6 5.2301406922110224E-5 0.0 3.80373868524438E-5 1.90186934262219E-5 8 4.754673356555475E-6 6.181075363522117E-5 0.0 4.754673356555475E-5 1.90186934262219E-5 9 4.754673356555475E-6 1.1886683391388687E-4 0.0 4.754673356555475E-5 1.90186934262219E-5 10-11 4.754673356555475E-6 1.1886683391388687E-4 0.0 8.558412041799856E-5 1.90186934262219E-5 12-13 4.754673356555475E-6 1.1886683391388687E-4 0.0 1.0222547716594271E-4 1.90186934262219E-5 14-15 7.132010034833212E-6 1.402628640183865E-4 0.0 1.1886683391388686E-4 2.6150703461055112E-5 16-17 9.50934671311095E-6 1.4264020069666426E-4 0.0 1.331308539835533E-4 3.3282713495888325E-5 18-19 9.50934671311095E-6 1.6879090415771936E-4 0.0 1.830549242273858E-4 3.80373868524438E-5 20-21 9.50934671311095E-6 1.9969628097532994E-4 0.0 2.3060165779294054E-4 3.80373868524438E-5 22-23 9.50934671311095E-6 2.35356331149496E-4 0.0 3.4471381835027195E-4 4.516939688727701E-5 24-25 9.50934671311095E-6 2.710163813236621E-4 0.0 8.368225107537636E-4 5.70560802786657E-5 26-27 9.50934671311095E-6 2.852804013933285E-4 0.0 0.0019422840661529116 5.70560802786657E-5 28-29 9.50934671311095E-6 2.852804013933285E-4 0.0 0.007267518225495043 5.70560802786657E-5 30-31 9.50934671311095E-6 3.1380844153266135E-4 0.0 0.009461799979545396 5.70560802786657E-5 32-33 9.50934671311095E-6 3.185631148892168E-4 0.0 0.014670544641651918 6.181075363522117E-5 34-35 1.1886683391388686E-5 4.0890190866377083E-4 0.0 0.020887280055348203 6.656542699177665E-5 36-37 1.4264020069666424E-5 4.968633657600472E-4 0.0 0.031594804454311134 6.656542699177665E-5 38-39 1.4264020069666424E-5 5.016180391166027E-4 0.0 0.0643378625242304 6.894276367005439E-5 40-41 1.4264020069666424E-5 5.895794962128789E-4 0.0 0.09869750953537855 7.369743702660987E-5 42-43 1.4264020069666424E-5 6.06220852960823E-4 0.0 0.1210634930046155 7.60747737048876E-5 44-45 1.6641356747944163E-5 6.846729633439884E-4 0.0 0.15060665590557293 7.60747737048876E-5 46-47 3.0905376817610585E-5 7.51238390335765E-4 0.0 0.18143120327612208 7.60747737048876E-5 48-49 3.3282713495888325E-5 7.559930636923205E-4 0.0 0.2097833205012624 8.558412041799856E-5 50-51 3.3282713495888325E-5 8.225584906840972E-4 0.0 0.23894373219701712 8.558412041799856E-5 52-53 3.3282713495888325E-5 8.320678373972081E-4 0.0 0.3098145159131548 9.50934671311095E-5 54-55 3.566005017416606E-5 8.368225107537636E-4 0.0 0.3968868490917552 1.0460281384422045E-4 56-57 4.279206020899928E-5 8.510865308234301E-4 0.0 0.48194082343049777 1.1648949723560913E-4 58-59 4.754673356555475E-5 8.534638675017078E-4 0.0 0.533788159047057 1.2837618062699782E-4 60-61 4.754673356555475E-5 8.653505508930965E-4 0.0 0.5638162986303831 1.331308539835533E-4 62-63 4.754673356555475E-5 8.796145709627629E-4 0.0 0.5865888066716055 1.331308539835533E-4 64-65 4.754673356555475E-5 9.889720581635387E-4 0.0 0.5943840936396783 1.3550819066183105E-4 66-67 4.9924070243832484E-5 0.001015122761624594 0.0 0.6012593513132574 1.3788552734010878E-4 68-69 5.2301406922110224E-5 0.001048405475120482 0.0 0.607718575068138 1.402628640183865E-4 70-71 5.2301406922110224E-5 0.0010698015052249819 0.0 0.6127965662129393 1.473948740532197E-4 72-73 5.2301406922110224E-5 0.001076933515259815 0.0 0.6168142651992287 1.521495474097752E-4 74-75 5.2301406922110224E-5 0.0010983295453643148 0.0 0.619933330921129 1.521495474097752E-4 76-77 5.2301406922110224E-5 0.001148253615608147 0.0 0.6229287751357591 1.521495474097752E-4 78-79 5.4678743600387964E-5 0.0011696496457126468 0.0 0.6249423793022603 1.521495474097752E-4 80-81 5.70560802786657E-5 0.0011696496457126468 0.0 0.6255866375420736 1.6403623080116388E-4 82-83 5.70560802786657E-5 0.0011696496457126468 0.0 0.626095387591225 1.711682408359971E-4 84-85 5.70560802786657E-5 0.001186291002460591 0.0 0.6263901773393314 1.711682408359971E-4 86-87 5.70560802786657E-5 0.0012171963792782015 0.0 0.6265304402033498 1.711682408359971E-4 88 5.70560802786657E-5 0.0012647431128437563 0.0 0.6265375722133846 1.711682408359971E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24620 0.0 50.06161 1 GTATCAA 45515 0.0 36.01037 1 TCAACGC 56210 0.0 28.317547 4 ATCAACG 56395 0.0 28.217209 3 CAACGCA 57600 0.0 27.626904 5 TATCAAC 59210 0.0 27.134666 2 AACGCAG 59035 0.0 26.962471 6 ACGCAGA 67790 0.0 23.44933 7 CGCAGAG 68540 0.0 23.192736 8 GTACATG 58855 0.0 21.17014 1 TACATGG 60050 0.0 20.244831 2 ACATGGG 60670 0.0 19.502146 3 GCAGAGT 80680 0.0 19.432425 9 AGAGTAC 73075 0.0 18.676777 10-11 GAGTACT 48335 0.0 18.072847 12-13 CAGAGTA 79500 0.0 17.3707 10-11 CATGGGG 43405 0.0 17.112108 4 GTGGTAT 12775 0.0 16.321108 1 AGTACTT 53670 0.0 16.209843 12-13 TGGTATC 11675 0.0 15.806529 2 >>END_MODULE