##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139537_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18428363 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.006083882762674 33.0 31.0 34.0 30.0 34.0 2 32.173246750131845 33.0 31.0 34.0 30.0 34.0 3 32.23263884046565 34.0 31.0 34.0 30.0 34.0 4 35.889323050560705 37.0 35.0 37.0 35.0 37.0 5 35.76646921921388 37.0 35.0 37.0 35.0 37.0 6 35.78289037393066 37.0 35.0 37.0 33.0 37.0 7 35.67090717715947 37.0 35.0 37.0 33.0 37.0 8 35.65746040492039 37.0 35.0 37.0 33.0 37.0 9 37.238645939414155 39.0 37.0 39.0 33.0 39.0 10-11 37.15404797485267 39.0 37.0 39.0 33.0 39.0 12-13 37.11731058260574 39.0 37.0 39.0 33.0 39.0 14-15 38.308560722403826 40.0 38.0 41.0 33.0 41.0 16-17 38.31101720755121 40.0 38.0 41.0 33.0 41.0 18-19 38.35291460777064 40.0 38.0 41.0 33.5 41.0 20-21 38.32990797694502 40.0 38.0 41.0 33.5 41.0 22-23 38.245349277778644 40.0 38.0 41.0 33.0 41.0 24-25 38.17282280972135 40.0 37.5 41.0 33.0 41.0 26-27 38.00513081828578 40.0 37.0 41.0 33.0 41.0 28-29 37.90633821705498 40.0 37.0 41.0 33.0 41.0 30-31 37.79243919706979 40.0 37.0 41.0 33.0 41.0 32-33 37.95297877961803 40.0 37.0 41.0 33.0 41.0 34-35 37.934859188388856 40.0 37.0 41.0 33.0 41.0 36-37 37.8582203202821 40.0 37.0 41.0 33.0 41.0 38-39 37.67413146371616 40.0 37.0 41.0 32.0 41.0 40-41 37.69462639369225 40.0 37.0 41.0 32.5 41.0 42-43 37.66647796398931 40.0 37.0 41.0 32.0 41.0 44-45 37.646920340418276 40.0 37.0 41.0 32.5 41.0 46-47 37.67457756164919 40.0 37.0 41.0 32.0 41.0 48-49 37.596586058287 40.0 37.0 41.0 32.0 41.0 50-51 37.51280206958482 40.0 36.0 41.0 32.0 41.0 52-53 37.37569732614217 39.0 36.0 41.0 31.0 41.0 54-55 37.27395401986445 39.0 36.0 41.0 31.0 41.0 56-57 37.130499283470996 39.0 35.5 41.0 31.0 41.0 58-59 36.98558749820995 39.0 35.0 40.0 31.0 41.0 60-61 36.78045563995582 38.5 35.0 40.0 31.0 41.0 62-63 36.54430666203147 38.0 35.0 40.0 31.0 41.0 64-65 36.345690652812394 38.0 35.0 40.0 30.0 41.0 66-67 36.055828341402275 37.5 34.0 40.0 30.0 41.0 68-69 35.77676359848479 37.0 34.0 39.5 30.0 41.0 70-71 35.49180448626393 36.5 34.0 39.0 29.0 41.0 72-73 35.19483500074004 36.0 34.0 39.0 29.0 40.0 74-75 34.86149946167153 35.5 34.0 38.5 29.0 40.0 76-77 33.81194210632226 35.0 32.5 37.0 28.0 39.0 78-79 34.141000080076566 35.0 33.0 37.0 29.0 39.0 80-81 34.033958380168436 35.0 33.0 36.5 29.0 39.0 82-83 33.82219177245979 35.0 33.0 36.0 29.0 38.5 84-85 33.60633087568536 35.0 33.0 36.0 29.0 37.0 86-87 33.40338680960385 35.0 33.0 35.0 29.0 37.0 88-89 33.19004714808946 35.0 33.0 35.0 29.0 36.5 90-91 33.08717432721075 35.0 33.0 35.0 29.0 36.0 92-93 33.015537702597435 34.5 33.0 35.0 29.0 36.0 94-95 32.9702820284158 34.0 33.0 35.0 29.0 35.5 96-97 32.89947915781088 34.0 32.0 35.0 29.0 35.0 98-99 33.0280887917819 34.0 32.5 35.0 29.0 35.0 100-101 32.55984200927726 34.0 32.0 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 24.0 20 123.0 21 828.0 22 3953.0 23 13575.0 24 35161.0 25 72945.0 26 127844.0 27 197601.0 28 277075.0 29 360448.0 30 450344.0 31 550778.0 32 674461.0 33 846563.0 34 1111832.0 35 1517345.0 36 2284675.0 37 3727727.0 38 4294511.0 39 1816841.0 40 63704.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.52008792099439 22.424281527339136 15.794311193023495 24.26131935864298 2 13.515812744888692 22.799455068817775 41.069936181406405 22.614796004887125 3 16.332308644018593 28.26110856370755 31.906383371273066 23.500199421000794 4 11.84490450942387 19.977368581246203 39.73904790132472 28.438679008005213 5 12.361401823916752 38.728654303152155 36.4557882867838 12.454155586147287 6 28.234911587100818 39.90920951578825 19.343421876376105 12.512457020734832 7 24.948401548200454 33.341577871024136 24.609559731377118 17.10046084939829 8 23.927768299332936 37.33453698518963 21.762741487130462 16.97495322834698 9 25.305877684306523 16.733000104241487 21.61441577854745 36.34670643290454 10-11 23.51689078405933 27.170126288482592 29.82908736929048 19.483895558167593 12-13 24.544372172395345 24.7315537467978 29.693966848818853 21.030107231987998 14-15 21.72567905244758 25.97492517376611 27.08580246655658 25.213593307229733 16-17 21.385030238442774 29.08806387197821 27.636138923462706 21.890766966116306 18-19 21.480836360777133 28.41531013905033 29.14230091951195 20.961552580660584 20-21 22.27467985141704 27.556995122467953 28.914264373101272 21.25406065301373 22-23 21.97268333628806 27.560787632270422 28.80204193441145 21.664487097030065 24-25 21.742675344293907 27.80349073699673 28.80538910932683 21.648444809382532 26-27 21.778291253975247 27.85120096347122 28.695327263408128 21.6751805191454 28-29 21.67798074935116 27.776454699793064 28.767537914877998 21.778026635977778 30-31 21.864441756173804 27.686194545738076 28.732170663835987 21.717193034252137 32-33 21.715261119041674 27.847579255684323 28.70822943485896 21.728930190415042 34-35 21.831171349296515 27.92797179498383 28.745215415537885 21.49564144018177 36-37 21.90829947370847 27.83404162077489 28.55481913916306 21.702839766353577 38-39 21.840566870019046 27.82830288486663 28.624337921422203 21.70679232369212 40-41 21.917127049919895 27.788705718241264 28.5911092804797 21.703057951359142 42-43 21.872860046246924 27.871929349873632 28.4236881838524 21.83152242002705 44-45 21.85815140769855 27.983143818875593 28.266625705760536 21.892079067665318 46-47 22.021651621886928 27.96663574107082 27.956981534067953 22.054731102974294 48-49 21.963032953116905 28.00486618770219 27.99221229238568 22.039888566795224 50-51 21.921896476785193 28.109903364232903 27.899710163044677 22.06848999593723 52-53 22.036274207815776 28.069563182496488 27.86856364296974 22.025598966717997 54-55 22.0278259923057 27.99681706088139 27.87446497479515 22.10089197201776 56-57 22.039878958239484 28.099571325180033 27.779501716846667 22.08104799973382 58-59 21.97280773006087 28.141420720951476 27.911901892777763 21.97386965620989 60-61 22.109686240797295 28.170575920558534 27.776312093776106 21.943425744868065 62-63 22.030021844563485 28.312257119556676 27.724667298011262 21.933053737868573 64-65 22.007639434541428 28.190639350389983 27.750611688048636 22.051109527019953 66-67 22.063079470755923 28.183089792872472 27.655617532788728 22.098213203582876 68-69 22.019851379032442 28.121225147367717 27.71596528215695 22.142958191442887 70-71 22.007376262506245 27.960161677447644 27.77020189636421 22.2622601636819 72-73 22.02698262649195 28.004375375135997 27.706909865355016 22.261732133017034 74-75 21.9389699729137 28.07927019262252 27.735346796234523 22.246413038229257 76-77 22.03995277844649 28.03886032981885 27.678672137924693 22.242514753809967 78-79 21.985197057494478 27.99829039622292 27.648363059968666 22.36814948631394 80-81 22.016901378108994 28.061546319580565 27.618902101914255 22.302650200396183 82-83 22.023004240545593 28.03305347381329 27.724075641655304 22.219866643985814 84-85 22.062658766412305 28.069098030380445 27.650967456060975 22.217275747146275 86-87 21.96455870310566 28.071294292271386 27.72746194675819 22.236685057864765 88-89 22.031030255758697 28.01937266191996 27.71337104152301 22.23622604079833 90-91 21.990468299736065 28.102944346923703 27.72813874623934 22.178448607100893 92-93 22.03586955422052 28.015175107040776 27.744115444355703 22.204839894383007 94-95 21.8101065690254 28.03320165699677 27.88814131921928 22.26855045475855 96-97 21.807966845685826 28.111708826206733 27.889986196215595 22.19033813189185 98-99 21.99816925927654 28.699072541613653 27.998491658793274 21.304266540316537 100-101 22.57466792132255 31.427759177944125 25.16791141575328 20.829661484980043 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4154.0 1 3749.5 2 5185.5 3 7368.5 4 9400.5 5 14038.5 6 17852.0 7 20681.5 8 22334.5 9 21637.5 10 19817.5 11 18114.5 12 20025.5 13 26770.0 14 42788.5 15 65481.5 16 83466.5 17 92228.0 18 93337.5 19 89826.0 20 84315.0 21 80588.5 22 82586.0 23 93078.0 24 112335.0 25 140472.5 26 175641.5 27 213519.0 28 256338.0 29 302549.0 30 347312.5 31 392013.5 32 435738.5 33 477480.5 34 517055.0 35 553636.5 36 594525.5 37 633595.5 38 662196.0 39 685648.5 40 705347.0 41 721099.5 42 728550.0 43 732503.5 44 738617.0 45 746625.5 46 755235.0 47 758476.5 48 750908.5 49 736567.0 50 720066.5 51 693519.0 52 657559.5 53 618062.5 54 575725.5 55 531661.0 56 485534.5 57 436381.0 58 387585.0 59 333572.0 60 275081.0 61 221625.5 62 175277.0 63 135780.5 64 100647.0 65 73714.0 66 55071.0 67 41725.0 68 31725.5 69 23338.0 70 17056.0 71 12428.0 72 8731.5 73 5917.5 74 4079.0 75 2822.5 76 1938.5 77 1266.0 78 824.5 79 571.0 80 417.0 81 306.5 82 230.0 83 157.5 84 104.5 85 72.5 86 58.5 87 48.5 88 32.5 89 24.0 90 18.5 91 10.5 92 5.5 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018883934508995726 3 7.054343351061622E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0023470255548212397 22-23 4.69461655023294E-4 24-25 0.0012268602152656534 26-27 0.01225425274568711 28-29 3.586153340330679E-4 30-31 0.002654235706029689 32-33 0.002795310982978463 34-35 0.0016822228586996157 36-37 0.06387108016524819 38-39 0.028100329031210985 40-41 0.026009220246404105 42-43 0.0034451484387535737 44-45 0.0017791257286229542 46-47 0.003654572112121819 48-49 0.0030768751244797587 50-51 7.899444795883248E-4 52-53 0.001037012666862818 54-55 0.0015858849451591036 56-57 0.012145412499558335 58-59 0.009151954386921075 60-61 0.004856582973654538 62-63 0.0026208547319304942 64-65 0.0012903870506785142 66-67 5.589005185485187E-4 68-69 0.0014193392617002686 70-71 4.41231689436428E-5 72-73 5.605014322244694E-4 74-75 2.2520658119261876E-4 76-77 0.004898355865391101 78-79 0.0012714433270235358 80-81 6.31646752285165E-4 82-83 4.6774834762007284E-4 84-85 0.002843395030011098 86-87 0.0033123671864842734 88-89 0.04213924478358366 90-91 3.684693806727677E-4 92-93 4.96852636568318E-4 94-95 2.235752392988094E-4 96-97 0.018308326406864618 98-99 2.3095589552698322E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 476.0 20-21 1750.0 22-23 3576.0 24-25 6529.0 26-27 8834.0 28-29 14174.0 30-31 31580.0 32-33 39804.0 34-35 56054.0 36-37 93417.0 38-39 105419.0 40-41 112888.0 42-43 128089.0 44-45 151366.0 46-47 152801.0 48-49 144206.0 50-51 133996.0 52-53 123008.0 54-55 131942.0 56-57 141046.0 58-59 149429.0 60-61 159346.0 62-63 149238.0 64-65 154371.0 66-67 166090.0 68-69 162352.0 70-71 166356.0 72-73 159433.0 74-75 159095.0 76-77 159517.0 78-79 176713.0 80-81 182294.0 82-83 176792.0 84-85 174951.0 86-87 183433.0 88-89 201432.0 90-91 221336.0 92-93 237186.0 94-95 302237.0 96-97 404614.0 98-99 1565183.0 100-101 1.143601E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.63537619919697 #Duplication Level Percentage of deduplicated Percentage of total 1 87.46703556374253 70.52937317710918 2 8.09493366076918 13.05476042087331 3 2.2886167848375214 5.536304262635105 4 0.9423423704629054 3.0394452620287757 5 0.4355506622092797 1.7560395750527313 6 0.2472515674221061 1.196233389295358 7 0.14582588499133256 0.8231107567099852 8 0.0983862731273203 0.6346731317166732 9 0.06377174596371346 0.46280328539972904 >10 0.21074126573491186 2.563756036258198 >50 0.004270563520596401 0.22665208943304624 >100 0.0012325878360314726 0.1527266458414004 >500 4.106938257502592E-5 0.02412196764642133 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.426417962355094E-6 2 0.0 1.627925388706528E-5 0.0 5.426417962355094E-6 5.426417962355094E-6 3 0.0 1.627925388706528E-5 0.0 1.0852835924710188E-5 5.426417962355094E-6 4 0.0 4.8837761661195845E-5 0.0 1.0852835924710188E-5 5.426417962355094E-6 5 0.0 4.8837761661195845E-5 0.0 1.0852835924710188E-5 5.426417962355094E-6 6 0.0 4.8837761661195845E-5 0.0 1.0852835924710188E-5 5.426417962355094E-6 7 0.0 4.8837761661195845E-5 0.0 1.0852835924710188E-5 5.426417962355094E-6 8 0.0 5.426417962355094E-5 0.0 1.627925388706528E-5 5.426417962355094E-6 9 0.0 9.224910536003659E-5 0.0 1.627925388706528E-5 1.0852835924710188E-5 10-11 0.0 9.224910536003659E-5 0.0 5.969059758590603E-5 1.0852835924710188E-5 12-13 0.0 9.224910536003659E-5 0.0 7.325664249179377E-5 1.3566044905887733E-5 14-15 2.713208981177547E-6 1.275208221153447E-4 0.0 8.410947841650394E-5 2.9845298792953016E-5 16-17 1.0852835924710186E-5 1.3566044905887734E-4 0.0 1.0310194128474679E-4 4.341134369884075E-5 18-19 1.899246286824283E-5 1.5193970294594263E-4 0.0 1.2480761313416716E-4 5.426417962355094E-5 20-21 2.1705671849420376E-5 1.627925388706528E-4 0.0 1.4651328498358753E-4 5.697738860472848E-5 22-23 2.1705671849420376E-5 1.980642556259609E-4 0.0 1.8178500173889566E-4 7.596985147297132E-5 24-25 4.06981347176632E-5 2.2248313645655883E-4 0.0 2.1705671849420373E-4 9.224910536003659E-5 26-27 5.1550970642373395E-5 2.3333597238126903E-4 0.0 2.7403410709893225E-4 9.767552332239169E-5 28-29 5.426417962355094E-5 2.3333597238126903E-4 0.0 5.290757513296216E-4 1.0310194128474679E-4 30-31 5.697738860472848E-5 2.63181271174222E-4 0.0 0.0014298611330805671 1.1395477720945696E-4 32-33 6.511701554826112E-5 2.6589448015539957E-4 0.0 0.003923300186782733 1.275208221153447E-4 34-35 8.13962694353264E-5 3.011661969107077E-4 0.0 0.006975660290607473 1.4108686702123244E-4 36-37 9.767552332239169E-5 3.364379136660158E-4 0.0 0.011411756974832762 1.4108686702123244E-4 38-39 9.767552332239169E-5 3.5814358551543616E-4 0.0 0.020400618329473975 1.5465291192712016E-4 40-41 9.767552332239169E-5 3.6899642144014636E-4 0.0 0.042640792348186324 1.8992462868242828E-4 42-43 9.767552332239169E-5 3.7713604838367904E-4 0.0 0.051895548182982934 1.8992462868242828E-4 44-45 1.0310194128474679E-4 4.232606010636973E-4 0.0 0.06513872122011054 1.8992462868242828E-4 46-47 1.0852835924710188E-4 4.6124552680018295E-4 0.0 0.08053618218829312 1.8992462868242828E-4 48-49 1.0852835924710188E-4 4.6395873578136053E-4 0.0 0.09421346866240914 2.0620388256949355E-4 50-51 1.0852835924710188E-4 4.91090825593136E-4 0.0 0.10786633625569456 2.0620388256949355E-4 52-53 1.1124156822827941E-4 4.938040345743135E-4 0.0 0.12632701016362657 2.3604918136244655E-4 54-55 1.1395477720945696E-4 4.96517243555491E-4 0.0 0.16281424454250223 2.740341070989322E-4 56-57 1.1395477720945696E-4 4.992304525366686E-4 0.0 0.20015071333248646 2.9302656996717507E-4 58-59 1.1395477720945696E-4 5.019436615178462E-4 0.0 0.23903099803276068 2.9845298792953017E-4 60-61 1.2480761313416716E-4 5.100832884613788E-4 0.0 0.2653599779861076 3.17445450797773E-4 62-63 1.2480761313416716E-4 5.209361243860889E-4 0.0 0.27928687968649196 3.255850777413056E-4 64-65 1.2480761313416716E-4 5.969059758590603E-4 0.0 0.2930455624300433 3.255850777413056E-4 66-67 1.2480761313416716E-4 6.050456028025929E-4 0.0 0.3002464190660885 3.3372470468483824E-4 68-69 1.2480761313416716E-4 6.240380656708358E-4 0.0 0.30669571681434754 3.5000395857190354E-4 70-71 1.2480761313416716E-4 6.267512746520133E-4 0.0 0.31318299948834305 3.6357000347779126E-4 72-73 1.2480761313416716E-4 6.294644836331908E-4 0.0 0.3183923607322039 3.9612851125192186E-4 74-75 1.2480761313416716E-4 6.430305285390786E-4 0.0 0.32319745383786935 3.9612851125192186E-4 76-77 1.2480761313416716E-4 6.728758273320315E-4 0.0 0.32747618440118637 3.9612851125192186E-4 78-79 1.3566044905887734E-4 6.918682902002744E-4 0.0 0.33139134496102557 3.9612851125192186E-4 80-81 1.3566044905887734E-4 6.94581499181452E-4 0.0 0.3337545499836312 4.0155492921427696E-4 82-83 1.3837365804005489E-4 6.94581499181452E-4 0.0 0.3354204602980742 4.124077651389871E-4 84-85 1.4108686702123244E-4 6.94581499181452E-4 0.0 0.33688016672994775 4.124077651389871E-4 86-87 1.4108686702123244E-4 7.081475440873398E-4 0.0 0.33708094419455487 4.178341831013422E-4 88-89 1.4108686702123244E-4 7.325664249179377E-4 0.0 0.3370999366574231 4.232606010636973E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20630 0.0 46.139572 1 GTATCAA 36655 0.0 35.57461 1 TCAACGC 45395 0.0 28.121017 4 ATCAACG 45605 0.0 27.982136 3 CAACGCA 46270 0.0 27.663296 5 AACGCAG 47460 0.0 26.996752 6 TATCAAC 48530 0.0 26.57842 2 ACGCAGA 55245 0.0 23.145906 7 CGCAGAG 56210 0.0 22.779024 8 GTACATG 53225 0.0 20.29018 1 TACATGG 54210 0.0 19.542198 2 GCAGAGT 66655 0.0 18.99099 9 ACATGGG 54525 0.0 18.941936 3 AGAGTAC 59960 0.0 18.775286 10-11 GAGTACT 35385 0.0 17.947268 12-13 CATGGGG 38765 0.0 17.128319 4 CAGAGTA 65760 0.0 16.734978 10-11 AGTACTT 40340 0.0 16.369312 12-13 GTACTTT 40960 0.0 15.526673 14-15 CTTATAC 16970 0.0 13.833352 1 >>END_MODULE