##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139533_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 22855102 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.456174993224707 31.0 31.0 34.0 30.0 34.0 2 31.62555244776418 31.0 31.0 34.0 30.0 34.0 3 31.674045165057674 31.0 31.0 34.0 30.0 34.0 4 35.464453101106265 37.0 35.0 37.0 33.0 37.0 5 35.28376478039783 37.0 35.0 37.0 33.0 37.0 6 35.27281672162303 37.0 35.0 37.0 32.0 37.0 7 35.18277791978351 37.0 35.0 37.0 32.0 37.0 8 35.11626988144704 37.0 35.0 37.0 32.0 37.0 9 36.66393223709962 39.0 35.0 39.0 32.0 39.0 10-11 36.60227189097647 39.0 35.0 39.0 32.0 39.0 12-13 36.55211460005735 39.0 35.0 39.0 32.0 39.0 14-15 37.639227315633946 39.0 36.0 41.0 32.0 41.0 16-17 37.60903655122607 39.0 36.0 41.0 32.0 41.0 18-19 37.62484433453852 39.0 36.0 41.0 32.0 41.0 20-21 37.594653168353105 39.0 36.0 41.0 32.0 41.0 22-23 37.51400697179402 39.0 36.0 41.0 32.0 41.0 24-25 37.39177991346611 39.0 36.0 41.0 31.5 41.0 26-27 37.15307527471316 39.0 36.0 41.0 31.0 41.0 28-29 36.991639444490225 39.0 36.0 40.0 31.0 41.0 30-31 36.81699567570317 39.0 35.5 40.0 30.0 41.0 32-33 36.58744274795553 38.0 35.0 40.0 30.0 41.0 34-35 36.42913484080826 38.0 35.0 40.0 30.0 41.0 36-37 36.26524364676064 38.0 35.0 40.0 30.0 41.0 38-39 36.09326045322993 38.0 34.5 40.0 29.5 41.0 40-41 35.92839939717547 38.0 34.0 40.0 29.0 41.0 42-43 35.714353395534275 38.0 34.0 40.0 28.5 41.0 44-45 36.151706834536824 38.0 34.5 40.0 29.5 41.0 46-47 36.39593197658552 38.0 35.0 40.0 30.0 41.0 48-49 36.44383360652018 38.0 35.0 40.0 30.0 41.0 50-51 36.368397591825655 38.0 35.0 40.0 29.5 41.0 52-53 36.23315272730716 38.0 34.5 40.0 29.0 41.0 54-55 36.098970081632345 38.0 34.0 40.0 29.0 41.0 56-57 35.97088386394841 38.0 34.0 40.0 28.0 41.0 58-59 35.78735098336773 38.0 34.0 40.0 28.0 41.0 60-61 35.598250737510554 38.0 34.0 40.0 28.0 41.0 62-63 35.37024847727383 37.0 33.5 40.0 28.0 41.0 64-65 35.106182849814644 37.0 33.0 40.0 28.0 41.0 66-67 34.800149908962254 36.0 33.0 39.0 27.5 41.0 68-69 34.527978107275125 36.0 32.0 39.0 26.5 40.5 70-71 34.24129557207832 35.5 32.0 39.0 26.0 40.0 72-73 33.932767972633485 35.0 32.0 38.0 26.0 40.0 74-75 33.600729025537206 35.0 31.5 37.5 26.0 39.5 76-77 31.917591678259882 33.5 29.5 35.5 25.0 38.5 78-79 32.926680773501616 34.0 31.0 36.0 26.0 39.0 80-81 32.99826973393217 34.0 31.0 36.0 26.0 39.0 82-83 32.77117820097928 34.0 31.0 36.0 26.0 37.5 84-85 32.53387809348654 34.0 31.0 35.0 26.0 37.0 86-87 32.327992433769296 34.0 31.0 35.0 26.0 37.0 88-89 32.12055969764747 34.0 31.0 35.0 26.0 36.0 90-91 31.971004279017105 34.0 31.0 35.0 26.0 36.0 92-93 31.935676526538913 34.0 31.0 35.0 26.0 36.0 94-95 31.928027636471597 34.0 31.0 35.0 26.0 35.0 96-97 32.03786662895698 34.0 31.0 35.0 26.0 35.0 98-99 32.25117973917844 34.0 31.0 35.0 27.0 35.0 100 30.334838118785022 32.0 29.0 34.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 6.0 19 33.0 20 312.0 21 2143.0 22 9793.0 23 32226.0 24 81141.0 25 165594.0 26 283346.0 27 428026.0 28 585269.0 29 743741.0 30 904353.0 31 1072042.0 32 1267400.0 33 1511262.0 34 1845134.0 35 2295030.0 36 2983878.0 37 3794833.0 38 3461436.0 39 1351038.0 40 37064.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.63880362467864 21.75687074159634 15.274672587328642 23.32965304639638 2 14.28767430531949 22.504748604330867 41.26714141028292 21.940435680066724 3 17.202553600616337 28.146657501097895 31.519961342546683 23.13082755573909 4 12.271282218826041 19.666019939464654 39.96164615853186 28.10105168317744 5 12.374226113714128 38.814383764290355 36.407389474787735 12.404000647207788 6 28.04594790257335 39.917196606692016 19.527416679216746 12.509438811517883 7 24.87687431891575 33.51130526566891 24.78419479379265 16.82762562162269 8 23.779385872011872 37.37501079082093 21.845311979532948 17.000291357634254 9 25.299747076167062 16.89848069809533 21.90856116065463 35.89321106508297 10-11 23.435774660175397 27.307637127277374 29.89401839825765 19.362569814289582 12-13 24.50830781511495 24.93474261615357 29.836878909593672 20.720070659137807 14-15 21.662679541764636 26.122887163078172 27.42279394287212 24.791639352285067 16-17 21.111795305118427 29.17606023569464 28.000516386961806 21.711628072225132 18-19 21.17740599542811 28.431688885523727 29.693505805717706 20.697399313330457 20-21 22.004958996748634 27.615666659643708 29.5302390788118 20.84913526479586 22-23 21.735249809222 27.536272984115396 29.425107561942294 21.303369644720316 24-25 21.532487633928877 27.724895752070495 29.40072142958107 21.341895184419567 26-27 21.526770659925816 27.835190430910068 29.264370604417888 21.373668304746225 28-29 21.52716223542663 27.824835791116403 29.294054250689793 21.35394772276717 30-31 21.738887189597385 27.734588996597825 29.192127506328152 21.334396307476634 32-33 21.56071246723944 27.940049202084854 29.099955009818128 21.399283320857574 34-35 21.69324384721535 27.924139748731353 29.128667684117936 21.253948719935366 36-37 21.70809708666311 27.877434837729453 29.031413897788372 21.38305417781907 38-39 21.606920456912466 28.001158556249784 29.024727998956934 21.367192987880816 40-41 21.7994767304826 27.866194019563178 28.903902730057613 21.43042651989661 42-43 21.654490405293096 28.029566321314086 28.706281833922652 21.60966143947016 44-45 21.745472649557133 28.145014366398 28.499574966851238 21.609938017193628 46-47 21.848663391777944 28.152343765700948 28.226694266839313 21.7722985756818 48-49 21.781435246032817 28.236618778056943 28.19310193107862 21.788844044831617 50-51 21.81986758233988 28.342205605272635 28.062342338655483 21.775584473731996 52-53 21.957615673919353 28.259044515382897 27.973076134494097 21.810263676203654 54-55 21.903276326451543 28.19417382864458 28.065388463376234 21.837161381527643 56-57 21.831546446361944 28.28310502042779 28.047919334668624 21.837429198541642 58-59 21.85228813365604 28.2945013696049 28.069303038731597 21.78390745800746 60-61 21.915982298104584 28.31745029392007 28.014016311297453 21.752551096677895 62-63 21.881225147226473 28.399105196219924 27.988442736929414 21.731226919624184 64-65 21.861242394952694 28.290273091444142 28.00278070397266 21.8457038096305 66-67 21.908060307587853 28.31070723822559 27.92403297630155 21.857199477885008 68-69 21.81411150895037 28.276325486955763 28.01861847147553 21.890944532618338 70-71 21.831118685634753 28.112658588275067 28.074287421104305 21.98193530498587 72-73 21.92065602210927 28.17567122763094 27.96380994468529 21.9398628055745 74-75 21.762447149721666 28.261889418103074 28.00966906417977 21.965994367995485 76-77 21.829455117726166 28.226884922182705 28.023965095461516 21.919694864629616 78-79 21.775370491704553 28.153584038926194 28.027331467644807 22.04371400172445 80-81 21.78438722063363 28.209776607692323 28.04274632778136 21.963089843892693 82-83 21.860231193090677 28.15134056371034 28.121278311084964 21.867149932114017 84-85 21.860280160181578 28.163326260473227 28.094416485676632 21.88197709366856 86-87 21.726438815307816 28.15042037958822 28.227927002852997 21.895213802250968 88-89 21.79566808826685 28.118829801595048 28.18554965205353 21.899952458084574 90-91 21.79399765096036 28.128459539668242 28.235128617791506 21.84241419157989 92-93 21.82425934271049 28.037917842311355 28.286196788185837 21.85162602679232 94-95 21.556724006425597 28.017195845787562 28.479591122247726 21.94648902553911 96-97 21.60598077083365 28.195617734103518 28.55188224990513 21.646519245157698 98-99 22.575667981794485 30.161277599394527 28.90660558496253 18.356448833848457 100 22.26462889617067 30.588543684175328 22.684804319271812 24.462023100382186 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4346.0 1 4157.0 2 6840.5 3 10199.5 4 13131.0 5 21072.0 6 28450.0 7 34286.0 8 38502.0 9 37738.5 10 33194.5 11 28191.0 12 29151.0 13 38157.5 14 59950.5 15 94356.5 16 124239.5 17 140979.0 18 147391.5 19 143890.0 20 136435.0 21 131098.0 22 128817.5 23 136989.0 24 159419.0 25 194355.5 26 238073.5 27 284691.5 28 335904.0 29 392132.5 30 446759.5 31 499995.0 32 558056.5 33 613856.0 34 663726.0 35 711756.5 36 761127.0 37 806511.0 38 838929.5 39 862204.0 40 883192.0 41 896636.0 42 901669.5 43 906840.5 44 913036.0 45 919663.5 46 919361.0 47 910902.5 48 897812.5 49 878927.5 50 857981.5 51 828311.5 52 790450.5 53 746373.5 54 696947.0 55 645460.5 56 592911.5 57 535984.5 58 474623.5 59 412212.0 60 345152.0 61 280770.5 62 224011.0 63 173645.0 64 130344.0 65 97652.5 66 74038.0 67 56674.5 68 44094.0 69 33683.5 70 25139.0 71 18498.0 72 13409.0 73 9515.0 74 6638.5 75 4682.0 76 3253.5 77 2193.0 78 1551.0 79 1109.0 80 796.5 81 580.5 82 409.5 83 270.0 84 188.0 85 136.5 86 102.5 87 77.5 88 52.5 89 30.5 90 19.5 91 14.5 92 12.0 93 10.0 94 6.5 95 4.0 96 3.0 97 3.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11963193163609595 3 4.3753906676942415E-6 4 1.0938476669235604E-4 5 0.0 6 0.0 7 0.0 8 1.26886329363133E-4 9 0.0 10-11 1.3126172003082725E-5 12-13 1.1157246202620317E-4 14-15 3.43468167413998E-4 16-17 6.497455141525949E-4 18-19 1.5313867336929847E-5 20-21 7.87620961350455E-5 22-23 4.376394811731434E-6 24-25 0.0066587449053870495 26-27 3.2852691880582045E-5 28-29 0.002334372900091843 30-31 0.0021113885180058644 32-33 0.024382344727685832 34-35 0.01636237566783716 36-37 0.008620444359216774 38-39 0.004267269150756007 40-41 9.20656996064673E-4 42-43 3.338196122721292E-4 44-45 0.0010488636927005026 46-47 0.0018305355003076311 48-49 0.0013598829750041694 50-51 6.306800181159332E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 4.586226981062986E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 1.1666330963766253E-4 70-71 4.6947186108804804E-4 72-73 7.787585607306167E-6 74-75 6.041454093945399E-5 76-77 3.534944601836598E-4 78-79 1.6131395594247007E-4 80-81 2.179200150190474E-5 82-83 8.289223382384997E-6 84-85 0.0 86-87 1.2246566909930004E-4 88-89 5.536525560631187E-4 90-91 2.959084414304131E-6 92-93 3.0303048668514347E-6 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 888.0 20-21 3037.0 22-23 6314.0 24-25 11907.0 26-27 16328.0 28-29 24518.0 30-31 46754.0 32-33 59087.0 34-35 81504.0 36-37 109077.0 38-39 138738.0 40-41 148214.0 42-43 177231.0 44-45 212749.0 46-47 190564.0 48-49 179722.0 50-51 167914.0 52-53 161270.0 54-55 173260.0 56-57 184870.0 58-59 191597.0 60-61 196519.0 62-63 191130.0 64-65 197798.0 66-67 214306.0 68-69 222092.0 70-71 230052.0 72-73 226023.0 74-75 229531.0 76-77 207197.0 78-79 236111.0 80-81 257484.0 82-83 262348.0 84-85 271399.0 86-87 296282.0 88-89 338820.0 90-91 385791.0 92-93 446943.0 94-95 556773.0 96-97 1091758.0 98-99 1830546.0 100-101 1.2680656E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.64094571617869 #Duplication Level Percentage of deduplicated Percentage of total 1 88.03453093773538 70.99187830499173 2 7.635338461820987 12.314418288487152 3 2.1586842039238676 5.2223500712099105 4 0.8961103710983532 2.890527511657882 5 0.4422207689964455 1.783055051360458 6 0.24502525940235934 1.1855441185534956 7 0.15708772467037602 0.8867391874475272 8 0.1053276168071175 0.6794974903485785 9 0.07573721497481264 0.549676857733058 >10 0.2438985538340788 3.0254346352653028 >50 0.0047514144283902875 0.2525941352220694 >100 0.0012052486936047768 0.1611529720992474 >500 4.7035830224453895E-5 0.02441414900931229 >1k 3.5187783906406354E-5 0.032717226614189986 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.3753906676942415E-6 0.0 2 8.750781335388483E-6 1.7501562670776966E-5 0.0 1.7501562670776966E-5 0.0 3 8.750781335388483E-6 1.7501562670776966E-5 0.0 1.7501562670776966E-5 0.0 4 8.750781335388483E-6 7.438164135080212E-5 0.0 2.625234400616545E-5 0.0 5 8.750781335388483E-6 7.875703201849635E-5 0.0 2.625234400616545E-5 0.0 6 8.750781335388483E-6 8.313242268619059E-5 0.0 2.625234400616545E-5 0.0 7 8.750781335388483E-6 8.313242268619059E-5 0.0 3.0627734673859695E-5 0.0 8 8.750781335388483E-6 1.0063398535696757E-4 0.0 3.0627734673859695E-5 0.0 9 8.750781335388483E-6 1.6188945470468696E-4 0.0 7.875703201849635E-5 0.0 10-11 8.750781335388483E-6 1.6188945470468696E-4 0.0 8.094472735234348E-5 0.0 12-13 8.750781335388483E-6 1.6626484537238118E-4 0.0 8.313242268619059E-5 0.0 14-15 8.750781335388483E-6 2.2314492405240633E-4 0.0 8.969550868773195E-5 0.0 16-17 8.750781335388483E-6 2.3627109605548906E-4 0.0 1.0063398535696757E-4 0.0 18-19 8.750781335388483E-6 2.581480493939603E-4 0.0 1.050093760246618E-4 0.0 20-21 8.750781335388483E-6 3.215912140755268E-4 0.0 1.1157246202620317E-4 0.0 22-23 8.750781335388483E-6 3.762835974217048E-4 0.0 1.1376015736005029E-4 0.0 24-25 8.750781335388483E-6 4.2660059010018856E-4 0.0 1.3126172003082725E-4 0.0 26-27 8.750781335388483E-6 4.331636761017299E-4 0.0 1.7501562670776965E-4 0.0 28-29 8.750781335388483E-6 4.331636761017299E-4 0.0 4.178498087648001E-4 0.0 30-31 8.750781335388483E-6 4.856683641140608E-4 0.0 9.997767675681342E-4 0.0 32-33 8.750781335388483E-6 4.900437547817551E-4 0.0 0.002297080100539477 0.0 34-35 8.750781335388483E-6 5.578623101310158E-4 0.0 0.004007857851607925 2.1876953338471208E-6 36-37 8.750781335388483E-6 6.322439514818179E-4 0.0 0.00679279401159531 4.3753906676942415E-6 38-39 8.750781335388483E-6 6.606839908218305E-4 0.0 0.011662603824739 4.3753906676942415E-6 40-41 8.750781335388483E-6 6.913117254956902E-4 0.0 0.017258728488719937 4.3753906676942415E-6 42-43 8.750781335388483E-6 7.153763741680085E-4 0.0 0.02280016076935469 4.3753906676942415E-6 44-45 8.750781335388483E-6 8.050718828557404E-4 0.0 0.028820698328101968 4.3753906676942415E-6 46-47 8.750781335388483E-6 8.750781335388483E-4 0.0 0.03549316909633569 4.3753906676942415E-6 48-49 8.750781335388483E-6 8.816412195403897E-4 0.0 0.04226627384992637 4.3753906676942415E-6 50-51 8.750781335388483E-6 9.472720795558033E-4 0.0 0.04960599169498346 4.3753906676942415E-6 52-53 8.750781335388483E-6 9.735244235619688E-4 0.0 0.05665255836530504 4.3753906676942415E-6 54-55 8.750781335388483E-6 0.0010172783302389112 0.0 0.06290717932477397 4.3753906676942415E-6 56-57 8.750781335388483E-6 0.0010369675882435352 0.0 0.06810514343799473 4.3753906676942415E-6 58-59 8.750781335388483E-6 0.001050093760246618 0.0 0.07318059661252004 4.3753906676942415E-6 60-61 8.750781335388483E-6 0.0010741584089189364 0.0 0.07851857322710701 4.3753906676942415E-6 62-63 8.750781335388483E-6 0.0010960353622574076 0.0 0.08380404515368166 4.3753906676942415E-6 64-65 1.0938476669235603E-5 0.0012207339962866934 0.0 0.08870010731083153 4.3753906676942415E-6 66-67 1.3126172003082725E-5 0.0012382355589574704 0.0 0.09359616946798138 4.3753906676942415E-6 68-69 1.3126172003082725E-5 0.0012973033329713429 0.0 0.09828221287308189 4.3753906676942415E-6 70-71 1.3126172003082725E-5 0.001321367981643661 0.0 0.10260072346209612 4.3753906676942415E-6 72-73 1.3126172003082725E-5 0.0013279310676452025 0.0 0.10620385767694232 4.3753906676942415E-6 74-75 1.5313867336929844E-5 0.0013716849743221449 0.0 0.10899098153226355 4.3753906676942415E-6 76-77 1.7501562670776966E-5 0.0014591927876760297 0.0 0.11167747140222783 4.3753906676942415E-6 78-79 1.7501562670776966E-5 0.0015051343896868193 0.0 0.11334887063728702 4.3753906676942415E-6 80-81 1.7501562670776966E-5 0.0015051343896868193 0.0 0.1138629790407411 4.3753906676942415E-6 82-83 1.7501562670776966E-5 0.0015160728663560549 0.0 0.11435739818619055 4.3753906676942415E-6 84-85 1.7501562670776966E-5 0.0015248236476914433 0.0 0.11455866615690449 4.3753906676942415E-6 86-87 1.7501562670776966E-5 0.0015663898590345384 0.0 0.11467680170493223 4.3753906676942415E-6 88 1.7501562670776966E-5 0.0016582730630561177 0.0 0.11468774018160147 4.3753906676942415E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 28155 0.0 49.93591 1 GTATCAA 51525 0.0 36.33048 1 TCAACGC 64795 0.0 28.39256 4 ATCAACG 65230 0.0 28.216106 3 CAACGCA 66010 0.0 27.831743 5 TATCAAC 67740 0.0 27.32337 2 AACGCAG 67385 0.0 27.313805 6 ACGCAGA 77350 0.0 23.74605 7 CGCAGAG 79085 0.0 23.256994 8 GCAGAGT 91265 0.0 19.895302 9 GTACATG 64680 0.0 19.83659 1 TACATGG 65350 0.0 19.182362 2 AGAGTAC 83370 0.0 18.814583 10-11 ACATGGG 65475 0.0 18.485657 3 GAGTACT 55320 0.0 18.33808 12-13 CAGAGTA 89660 0.0 17.69395 10-11 CATGGGG 46700 0.0 16.6902 4 AGTACTT 61665 0.0 16.567091 12-13 GTACTTT 63445 0.0 15.980432 14-15 GTGGTAT 14085 0.0 15.301539 1 >>END_MODULE