##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139531_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20047748 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.429441651002396 31.0 31.0 34.0 30.0 34.0 2 31.589916533268475 31.0 31.0 34.0 30.0 34.0 3 31.636070046371294 31.0 31.0 34.0 30.0 34.0 4 35.42947571966687 37.0 35.0 37.0 33.0 37.0 5 35.24278587300678 37.0 35.0 37.0 32.0 37.0 6 35.23541671613191 37.0 35.0 37.0 32.0 37.0 7 35.14597140786087 37.0 35.0 37.0 32.0 37.0 8 35.079599464239074 37.0 35.0 37.0 32.0 37.0 9 36.62078568625264 39.0 35.0 39.0 32.0 39.0 10-11 36.553595421291206 39.0 35.0 39.0 32.0 39.0 12-13 36.50306146605594 38.5 35.0 39.0 32.0 39.0 14-15 37.5814605211518 39.0 36.0 41.0 32.0 41.0 16-17 37.548669331837175 39.0 36.0 41.0 32.0 41.0 18-19 37.55932344620453 39.0 36.0 41.0 32.0 41.0 20-21 37.52633807426427 39.0 36.0 41.0 32.0 41.0 22-23 37.44517195302116 39.0 36.0 41.0 32.0 41.0 24-25 37.31763773126293 39.0 36.0 41.0 31.0 41.0 26-27 37.07244046777939 39.0 36.0 40.5 31.0 41.0 28-29 36.90548819720845 39.0 36.0 40.0 30.5 41.0 30-31 36.72713270964857 38.5 35.5 40.0 30.0 41.0 32-33 36.49563901845609 38.0 35.0 40.0 30.0 41.0 34-35 36.33389617475599 38.0 35.0 40.0 30.0 41.0 36-37 36.16807852356222 38.0 35.0 40.0 30.0 41.0 38-39 35.989095233254375 38.0 34.0 40.0 29.5 41.0 40-41 35.816806635529275 38.0 34.0 40.0 29.0 41.0 42-43 35.59465719964294 38.0 34.0 40.0 28.0 41.0 44-45 36.0430602529336 38.0 34.5 40.0 29.5 41.0 46-47 36.29588321990935 38.0 35.0 40.0 30.0 41.0 48-49 36.343256668551724 38.0 35.0 40.0 30.0 41.0 50-51 36.261988074501694 38.0 35.0 40.0 29.0 41.0 52-53 36.12085772238906 38.0 34.0 40.0 29.0 41.0 54-55 35.98222455422213 38.0 34.0 40.0 28.5 41.0 56-57 35.850647739138125 38.0 34.0 40.0 28.0 41.0 58-59 35.66116986432881 38.0 34.0 40.0 28.0 41.0 60-61 35.46806684232378 37.5 33.5 40.0 28.0 41.0 62-63 35.23452908594416 37.0 33.0 40.0 28.0 41.0 64-65 34.96409205333376 36.5 33.0 39.5 27.5 41.0 66-67 34.653976312621765 36.0 32.5 39.0 26.5 41.0 68-69 34.37881868755342 36.0 32.0 39.0 26.0 40.0 70-71 34.086608211512925 35.0 32.0 38.5 26.0 40.0 72-73 33.77520457879508 35.0 31.5 38.0 26.0 40.0 74-75 33.444608325350444 35.0 31.0 37.5 26.0 39.5 76-77 31.76442499923597 33.5 29.5 35.5 25.0 38.5 78-79 32.78677468370326 34.0 31.0 36.0 26.0 39.0 80-81 32.86378589855877 34.0 31.0 36.0 26.0 38.5 82-83 32.64037451053264 34.0 31.0 36.0 26.0 37.5 84-85 32.40450427625176 34.0 31.0 35.0 26.0 37.0 86-87 32.19863158801378 34.0 31.0 35.0 26.0 36.5 88-89 31.991593463503673 34.0 31.0 35.0 25.5 36.0 90-91 31.842339951684785 34.0 31.0 35.0 25.0 36.0 92-93 31.806342590464048 34.0 31.0 35.0 25.0 35.5 94-95 31.803178414309045 34.0 31.0 35.0 25.0 35.0 96-97 31.919634461014667 34.0 31.0 35.0 26.0 35.0 98-99 32.14621436949558 34.0 31.0 35.0 26.5 35.0 100 30.182221229076283 32.0 27.0 34.0 23.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 9.0 19 35.0 20 314.0 21 1977.0 22 9140.0 23 30259.0 24 76446.0 25 153075.0 26 260881.0 27 391104.0 28 533905.0 29 677635.0 30 818281.0 31 968462.0 32 1137853.0 33 1356667.0 34 1650442.0 35 2051927.0 36 2647336.0 37 3298394.0 38 2890793.0 39 1065996.0 40 26817.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.5078689137553 21.87577876577459 15.225485675498316 23.390866644971794 2 14.399740235146721 22.61119809447179 41.02768021835909 21.961381452022408 3 17.373933209249557 28.090664157456903 31.454643329978342 23.080759303315197 4 12.42762520074598 19.695008770072853 39.719376623501 28.157989405680166 5 12.456755741343118 38.76316182745314 36.33727339350036 12.442809037703388 6 28.1596865642964 39.79138205448313 19.482327890394473 12.566603490826003 7 24.955930212211367 33.461464100606214 24.72374453230358 16.85886115487884 8 23.806552565578528 37.386625511529495 21.790732312701895 17.016089610190086 9 25.293504287863154 16.91153041229369 21.910660489148206 35.88430481069494 10-11 23.549300166978867 27.251254897900868 29.764504953212573 19.434939981907693 12-13 24.571397417219902 24.88937093827316 29.758381475297075 20.78085016920986 14-15 21.722112629284023 26.06764700490793 27.302755469494027 24.90748489631402 16-17 21.192414107269407 29.123702167453146 27.906240183523146 21.777643541754298 18-19 21.295335742132988 28.400419309015035 29.5502843225082 20.753960626343776 20-21 22.08615729416962 27.567621914694335 29.37933670791914 20.966884083216904 22-23 21.854991227669498 27.4960503994205 29.224527181127613 21.424431191782386 24-25 21.657124853870478 27.695193375132327 29.196532093988292 21.451149677008903 26-27 21.64006945607309 27.77190165340473 29.101987750349075 21.48604114017311 28-29 21.6175211469318 27.774367818703034 29.149684658130546 21.45842637623462 30-31 21.834699189374547 27.71294732636132 29.007382689120913 21.444970795143213 32-33 21.679083472736615 27.84809666203916 28.962994338612663 21.50982552661156 34-35 21.771629327060666 27.864137582976333 28.987712205647025 21.376520884315976 36-37 21.801758135453476 27.841331077475196 28.872866136428925 21.4840446506424 38-39 21.721407125663735 27.882788504446516 28.89571992996625 21.5000844399235 40-41 21.871805760081955 27.818171511420807 28.76836364778464 21.541659080712595 42-43 21.775367437550752 27.959815798198168 28.5523565327866 21.71246023146448 44-45 21.84141094885554 28.03634397356155 28.3913547667101 21.730890310872812 46-47 21.908136290050393 28.067285643456973 28.157746328181858 21.866831738310776 48-49 21.88530414483319 28.149783398495032 28.098665865651107 21.866246591020673 50-51 21.917749162670404 28.25020907625949 27.947501567306855 21.88454019376325 52-53 22.047146553382987 28.165760517929545 27.854713146766596 21.932379781920876 54-55 22.017867040667873 28.122002326300198 27.92886200373821 21.93126862929372 56-57 21.908232450622158 28.200886135538294 27.96585058569589 21.925030828143658 58-59 21.931981702738167 28.250079776257405 27.947187141280143 21.870751379724286 60-61 22.03060796322096 28.221199064532726 27.924627576850703 21.823565395395615 62-63 21.984865985697127 28.303892410938925 27.901282177200976 21.809959426162973 64-65 21.920898838630333 28.217438557235297 27.908938905806085 21.95272369832829 66-67 21.97509452257879 28.226271588110823 27.843507315101373 21.955126574209014 68-69 21.892240858074928 28.203642041491012 27.911198475261028 21.99291862517304 70-71 21.904759175872744 28.039935499585972 28.004633419888826 22.050671904652457 72-73 21.95663065307363 28.11614987373702 27.879732258085898 22.04748721510346 74-75 21.8366107528489 28.165868556595147 27.958660569242262 22.03886012131369 76-77 21.89500671631457 28.100299590354812 27.98387236063079 22.020821332699832 78-79 21.837286844198893 28.102865320852633 27.96101025744807 22.0988375775004 80-81 21.895845410285897 28.101251927847375 27.992842399251778 22.010060262614957 82-83 21.89741124985515 28.07791761432118 28.074816586327245 21.949854549496425 84-85 21.914040901803606 28.085824740520138 28.03188973047978 21.968244627196476 86-87 21.794611705059253 28.111821349529563 28.13320380768985 21.96036313772133 88-89 21.884437835848146 28.028990383814968 28.09513518923839 21.9914365910985 90-91 21.855595237805485 28.08641612220763 28.141260921971373 21.916727718015515 92-93 21.88496825936643 27.964113599413515 28.22638472924372 21.924533411976334 94-95 21.613368057284454 27.983309202821477 28.38964267960652 22.01368006028755 96-97 21.663733943470774 28.15460421412894 28.478113185299176 21.70354865710111 98-99 22.709467509585277 30.061007629493382 28.82891170301236 18.40061315790898 100 22.385120580866737 30.39892951150735 22.59786007757569 24.618089830050224 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3698.0 1 3462.0 2 5725.0 3 8604.0 4 11097.5 5 17726.0 6 23803.0 7 28434.5 8 31842.5 9 31335.5 10 27746.5 11 23676.0 12 24311.0 13 31608.5 14 49453.0 15 77927.0 16 102748.0 17 116819.0 18 122145.0 19 119355.5 20 113377.0 21 109213.0 22 107946.0 23 115292.0 24 134939.5 25 165259.0 26 202644.5 27 242569.5 28 287671.0 29 338947.5 30 389865.0 31 437346.5 32 487140.5 33 534210.0 34 576158.5 35 615945.0 36 658346.0 37 696362.0 38 725742.0 39 749906.5 40 769262.5 41 783011.5 42 786785.0 43 791714.0 44 797474.0 45 804493.0 46 806459.0 47 799444.5 48 791177.5 49 777353.0 50 759739.5 51 735043.0 52 702359.5 53 664396.5 54 622895.5 55 578480.5 56 531906.5 57 484770.5 58 433956.0 59 376705.5 60 314750.0 61 255764.0 62 204300.5 63 159080.0 64 120298.0 65 90919.5 66 69008.5 67 53293.5 68 41729.5 69 31511.5 70 23199.0 71 17059.5 72 12222.5 73 8666.5 74 6129.5 75 4232.0 76 2919.5 77 2004.0 78 1384.0 79 985.5 80 708.5 81 504.5 82 379.0 83 283.0 84 212.5 85 154.0 86 112.0 87 85.0 88 50.5 89 26.0 90 19.0 91 16.5 92 15.5 93 10.0 94 3.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11714033915430301 3 9.976182861037558E-6 4 1.1971419433245071E-4 5 0.0 6 0.0 7 0.0 8 1.3966656005452583E-4 9 0.0 10-11 7.4821371457781695E-6 12-13 4.7386868589928406E-5 14-15 3.7660090300416785E-4 16-17 7.008268459878886E-4 18-19 1.745832000681573E-5 20-21 7.482667523082906E-5 22-23 2.4946552012313616E-6 24-25 0.00648840100993459 26-27 1.9976432803400188E-5 28-29 0.0023865395371632687 30-31 0.0022194918274532523 32-33 0.023637348605678545 34-35 0.015919907100766396 36-37 0.00848651681292067 38-39 0.0043087246370464094 40-41 9.217966373114016E-4 42-43 3.1108992385907E-4 44-45 0.0010838798261467132 46-47 0.0018450875486190385 48-49 0.0012168179229414286 50-51 5.3223737850950005E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 4.1252895540738006E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 8.381617955737832E-5 70-71 4.8535007350568386E-4 72-73 1.183567397594494E-5 74-75 4.491500598672115E-5 76-77 2.9392312128658817E-4 78-79 2.053778276120435E-4 80-81 2.1742780791085608E-5 82-83 3.1514511140285147E-6 84-85 3.1989921895006195E-6 86-87 9.426736121991587E-5 88-89 5.262694512830052E-4 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 863.0 20-21 2889.0 22-23 5537.0 24-25 11460.0 26-27 14249.0 28-29 21313.0 30-31 40861.0 32-33 50927.0 34-35 70115.0 36-37 95651.0 38-39 121253.0 40-41 129232.0 42-43 153348.0 44-45 183119.0 46-47 164678.0 48-49 156196.0 50-51 147568.0 52-53 141347.0 54-55 152869.0 56-57 162041.0 58-59 168923.0 60-61 173493.0 62-63 168361.0 64-65 174527.0 66-67 188551.0 68-69 196533.0 70-71 203473.0 72-73 200339.0 74-75 203034.0 76-77 182775.0 78-79 208476.0 80-81 229124.0 82-83 235076.0 84-85 242947.0 86-87 266605.0 88-89 303823.0 90-91 346542.0 92-93 404488.0 94-95 506353.0 96-97 982191.0 98-99 1636760.0 100-101 1.0999838E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.0159248989752 #Duplication Level Percentage of deduplicated Percentage of total 1 88.26515779338419 72.39148552778394 2 7.691792120545521 12.616988897943815 3 2.114780095322994 5.2033693642757495 4 0.8415372647375876 2.7607782841762805 5 0.40552325853362203 1.6629682558340624 6 0.22611765351524074 1.112714909342309 7 0.13644075660826047 0.7833220392999711 8 0.08327207451821017 0.5463708967893913 9 0.05532992060037019 0.40841411513636006 >10 0.17557185617384083 2.1877718522705663 >50 0.0036119891255115186 0.1955725039134054 >100 8.533246289546245E-4 0.12036297202113425 >500 0.0 0.0 >1k 1.1892305823699898E-5 0.00988038121309275 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.988091430518779E-6 2 0.0 0.0 0.0 0.0 4.988091430518779E-6 3 0.0 0.0 0.0 4.988091430518779E-6 4.988091430518779E-6 4 0.0 1.4964274291556339E-5 0.0 9.976182861037558E-6 1.4964274291556339E-5 5 4.988091430518779E-6 1.4964274291556339E-5 0.0 2.9928548583112678E-5 1.4964274291556339E-5 6 2.49404571525939E-5 1.4964274291556339E-5 0.0 3.491664001363146E-5 1.4964274291556339E-5 7 2.49404571525939E-5 1.4964274291556339E-5 0.0 4.98809143051878E-5 1.4964274291556339E-5 8 2.49404571525939E-5 2.49404571525939E-5 0.0 4.98809143051878E-5 1.9952365722075116E-5 9 2.49404571525939E-5 1.0474992004089436E-4 0.0 4.98809143051878E-5 2.9928548583112678E-5 10-11 3.2422594298372066E-5 1.0474992004089436E-4 0.0 4.98809143051878E-5 2.9928548583112678E-5 12-13 3.491664001363146E-5 1.0973801147141315E-4 0.0 5.7363051450965964E-5 2.9928548583112678E-5 14-15 3.990473144415023E-5 1.6710106292237912E-4 0.0 5.9857097166225356E-5 4.4892822874669015E-5 16-17 6.484518859674413E-5 1.8455938292919483E-4 0.0 5.9857097166225356E-5 6.983328002726291E-5 18-19 6.484518859674413E-5 1.895474743597136E-4 0.0 5.9857097166225356E-5 7.23273257425223E-5 20-21 6.484518859674413E-5 1.945355657902324E-4 0.0 6.235114288148475E-5 7.48213714577817E-5 22-23 6.733923431200353E-5 2.394283886649014E-4 0.0 7.23273257425223E-5 8.729160003407865E-5 24-25 6.983328002726291E-5 2.668628915327547E-4 0.0 8.729160003407863E-5 1.0724396575615376E-4 26-27 6.983328002726291E-5 2.7434502867853286E-4 0.0 1.3717251433926643E-4 1.0973801147141315E-4 28-29 6.983328002726291E-5 2.7434502867853286E-4 0.0 3.39190217275277E-4 1.0973801147141315E-4 30-31 7.980946288830047E-5 3.1923785155320186E-4 0.0 0.0011248146175819847 1.1223205718667253E-4 32-33 8.729160003407863E-5 3.2422594298372066E-4 0.0 0.002920527532568745 1.1971419433245071E-4 34-35 9.97618286103756E-5 3.541544915668333E-4 0.0 0.0051427222648648616 1.1971419433245071E-4 36-37 1.0973801147141315E-4 3.84083040149946E-4 0.0 0.008098166437447239 1.247022857629695E-4 38-39 1.0973801147141315E-4 4.065294515872805E-4 0.0 0.01311868046226439 1.2969037719348826E-4 40-41 1.0973801147141315E-4 4.539163201772089E-4 0.0 0.01850831325293993 1.3467846862400706E-4 42-43 1.0973801147141315E-4 4.564103658924683E-4 0.0 0.023725856889262573 1.3717251433926646E-4 44-45 1.197141943324507E-4 4.86338914475581E-4 0.0 0.029716554697315628 1.3966656005452583E-4 46-47 1.3467846862400706E-4 5.137734173434343E-4 0.0 0.0360314784483524 1.47148697200304E-4 48-49 1.3467846862400706E-4 5.162674630586937E-4 0.0 0.04241623547941644 1.5463083434608216E-4 50-51 1.496427429155634E-4 5.611602859333627E-4 0.0 0.04886833174479248 1.5463083434608216E-4 52-53 1.496427429155634E-4 5.661483773638815E-4 0.0 0.055285511370154895 1.7458320006815726E-4 54-55 1.496427429155634E-4 5.761245602249191E-4 0.0 0.06128618536106899 1.970296115054918E-4 56-57 1.496427429155634E-4 5.836066973706972E-4 0.0 0.06676560379749386 2.0700579436652936E-4 58-59 1.496427429155634E-4 5.836066973706972E-4 0.0 0.07236723047396645 2.1448793151230752E-4 60-61 1.6211297149186033E-4 5.960769259469942E-4 0.0 0.07808857134477148 2.1448793151230752E-4 62-63 1.7957129149867606E-4 6.060531088080317E-4 0.0 0.08353307314118275 2.1448793151230752E-4 64-65 1.7957129149867606E-4 6.733923431200352E-4 0.0 0.08855109312028464 2.1698197722756692E-4 66-67 1.8954747435971363E-4 6.808744802658134E-4 0.0 0.09340949417360991 2.194760229428263E-4 68-69 1.8954747435971363E-4 6.983328002726291E-4 0.0 0.09830031782123358 2.194760229428263E-4 70-71 2.0201770293601056E-4 7.132970745641854E-4 0.0 0.1025676300400424 2.2945220580386386E-4 72-73 2.444164800954202E-4 7.23273257425223E-4 0.0 0.10626131174434156 2.5439266295645773E-4 74-75 2.444164800954202E-4 7.457196688625575E-4 0.0 0.10911200599688305 2.5439266295645773E-4 76-77 2.444164800954202E-4 7.781422631609296E-4 0.0 0.11162849812357976 2.5688670867171713E-4 78-79 2.444164800954202E-4 7.93106537452486E-4 0.0 0.11339428248998341 2.593807543869765E-4 80-81 2.444164800954202E-4 7.93106537452486E-4 0.0 0.11398287727878463 2.618748001022359E-4 82-83 2.444164800954202E-4 7.93106537452486E-4 0.0 0.11447420428469073 2.693569372480141E-4 84-85 2.469105258106796E-4 7.956005831677454E-4 0.0 0.11472859694764719 2.693569372480141E-4 86-87 2.49404571525939E-4 8.180469946050798E-4 0.0 0.11484332305054912 2.693569372480141E-4 88 2.5439266295645773E-4 8.579517260492301E-4 0.0 0.1148508051876949 2.693569372480141E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24205 0.0 48.57202 1 GTATCAA 43885 0.0 35.633873 1 TCAACGC 53820 0.0 28.389847 4 ATCAACG 54205 0.0 28.14949 3 CAACGCA 54640 0.0 27.932941 5 AACGCAG 56290 0.0 27.196388 6 TATCAAC 57060 0.0 26.99299 2 ACGCAGA 64510 0.0 23.646238 7 CGCAGAG 66005 0.0 23.117025 8 GTACATG 56515 0.0 19.879488 1 GCAGAGT 76660 0.0 19.613388 9 TACATGG 57965 0.0 18.815767 2 AGAGTAC 70185 0.0 18.406698 10-11 ACATGGG 58065 0.0 18.349113 3 GAGTACT 45280 0.0 18.26061 12-13 CAGAGTA 75405 0.0 17.559042 10-11 GTGGTAT 12045 0.0 16.075754 1 AGTACTT 50295 0.0 16.067799 12-13 CATGGGG 42605 0.0 16.007078 4 GTACTTT 51680 0.0 15.947446 14-15 >>END_MODULE