##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139528_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8953939 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64099666079923 33.0 33.0 33.0 33.0 33.0 2 32.64291235399303 33.0 33.0 33.0 33.0 33.0 3 32.642170892609386 33.0 33.0 33.0 33.0 33.0 4 36.55571129086316 37.0 37.0 37.0 37.0 37.0 5 36.577960828189696 37.0 37.0 37.0 37.0 37.0 6 36.56249969985277 37.0 37.0 37.0 37.0 37.0 7 36.52925801705819 37.0 37.0 37.0 37.0 37.0 8 36.52808869928643 37.0 37.0 37.0 37.0 37.0 9 36.566486995276605 37.0 37.0 37.0 37.0 37.0 10-11 36.49191903138943 37.0 37.0 37.0 37.0 37.0 12-13 36.49204165898382 37.0 37.0 37.0 37.0 37.0 14-15 38.58255355547988 40.0 37.0 40.0 37.0 40.0 16-17 38.52498743848936 40.0 37.0 40.0 37.0 40.0 18-19 38.54396042903576 40.0 37.0 40.0 37.0 40.0 20-21 38.52991557410021 40.0 37.0 40.0 37.0 40.0 22-23 38.53889812656461 40.0 37.0 40.0 37.0 40.0 24-25 38.52817335105999 40.0 37.0 40.0 37.0 40.0 26-27 38.42980890421248 40.0 37.0 40.0 37.0 40.0 28-29 38.36899801220066 40.0 37.0 40.0 37.0 40.0 30-31 38.31509395351232 40.0 37.0 40.0 37.0 40.0 32-33 38.25384500438993 40.0 37.0 40.0 37.0 40.0 34-35 38.224535494106135 40.0 37.0 40.0 37.0 40.0 36-37 38.169611260272816 40.0 37.0 40.0 37.0 40.0 38-39 38.12530671863119 40.0 37.0 40.0 37.0 40.0 40-41 38.094147963663985 40.0 37.0 40.0 35.0 40.0 42-43 38.03897491934648 40.0 37.0 40.0 33.0 40.0 44-45 37.97822898263711 40.0 37.0 40.0 33.0 40.0 46-47 37.93863587918749 40.0 37.0 40.0 33.0 40.0 48-49 37.91612533759869 40.0 37.0 40.0 33.0 40.0 50-51 37.84660333354216 40.0 37.0 40.0 33.0 40.0 52-53 37.74016993705957 40.0 37.0 40.0 33.0 40.0 54-55 37.54575996572824 40.0 37.0 40.0 33.0 40.0 56-57 37.47000099220135 40.0 37.0 40.0 33.0 40.0 58-59 37.350769104463126 40.0 37.0 40.0 33.0 40.0 60-61 37.213732877812994 37.0 37.0 40.0 33.0 40.0 62-63 37.05212148009285 37.0 37.0 40.0 33.0 40.0 64-65 36.862166985495875 37.0 37.0 40.0 33.0 40.0 66-67 36.65137463644828 37.0 37.0 40.0 33.0 40.0 68-69 36.44846277571293 37.0 37.0 40.0 33.0 40.0 70-71 36.18024967614488 37.0 37.0 38.5 33.0 40.0 72-73 35.962399596007515 37.0 37.0 37.0 33.0 40.0 74-75 35.76967179542693 37.0 35.0 37.0 33.0 40.0 76-77 34.13311045269557 35.0 33.0 37.0 30.0 37.0 78-79 35.21823107148241 37.0 33.0 37.0 33.0 37.0 80-81 35.26989955084637 37.0 33.0 37.0 33.0 37.0 82-83 35.144739165266294 37.0 33.0 37.0 33.0 37.0 84-85 34.97896106855006 37.0 33.0 37.0 33.0 37.0 86-87 34.898383485298204 37.0 33.0 37.0 33.0 37.0 88-89 34.79875183846582 37.0 33.0 37.0 33.0 37.0 90-91 34.68867709482129 37.0 33.0 37.0 33.0 37.0 92-93 34.66350166734895 37.0 33.0 37.0 33.0 37.0 94-95 34.691835886539906 37.0 33.0 37.0 33.0 37.0 96-97 34.685340897488985 37.0 33.0 37.0 33.0 37.0 98-99 34.66168661655668 37.0 33.0 37.0 33.0 37.0 100 34.643993534835666 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 1.0 18 2.0 19 11.0 20 46.0 21 259.0 22 1150.0 23 3172.0 24 7465.0 25 15017.0 26 26590.0 27 42319.0 28 62873.0 29 88444.0 30 120967.0 31 162012.0 32 216001.0 33 290115.0 34 402090.0 35 587963.0 36 1029879.0 37 2544358.0 38 3263832.0 39 89371.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.59685474739106 20.331778002954902 14.493140951708517 23.578226297945516 2 14.474869663507869 21.28748029219319 41.700373433412935 22.537276610886003 3 17.703247699141127 26.837897823516556 30.73994584953058 24.718908627811736 4 12.203031537293253 18.52411547588162 39.488408397689554 29.78444458913557 5 13.079640144968598 38.12163562874395 35.77240139786523 13.026322828422218 6 29.26464746234695 38.412559500455835 19.216403804231955 13.10638923296526 7 26.11450669923036 33.02315327365978 23.5808396729082 17.281500354201654 8 24.369810873181066 36.61781703002444 21.34859306055134 17.663779036243156 9 25.747048310246473 16.786634351652385 21.310453421672854 36.15586391642829 10-11 23.994345867308596 26.817625963441362 29.26727917537048 19.920748993879567 12-13 25.04865458051074 24.5361872142039 29.162968106986693 21.25219009829867 14-15 22.13750117690525 25.83405585729129 26.89453823263957 25.133904733163888 16-17 21.524543555635123 28.940938730987558 27.499349727533325 22.035167985843994 18-19 21.586421350424658 28.092049767147177 29.27607056514457 21.0454583172836 20-21 22.50961846293676 27.208530152779115 29.110634004648446 21.171217379635678 22-23 22.209213639554772 27.145870237600793 28.94009408064625 21.70482204219818 24-25 21.928325528957075 27.33875461548533 29.024029569492466 21.708890286065134 26-27 21.869111035581632 27.475817233978677 28.93013285260675 21.72493887783294 28-29 21.80073569391055 27.47219822807182 29.016527148437905 21.710538929579727 30-31 22.05554272846147 27.41322256393203 28.83019158419672 21.70104312340978 32-33 21.86887213218448 27.554508009368746 28.789492789477993 21.787127068968783 34-35 22.025560104350888 27.561117581848272 28.77573128782419 21.63759102597665 36-37 22.00628258026122 27.511388887527755 28.685538513598036 21.796790018612988 38-39 21.886423041475073 27.636481521113073 28.75188164173722 21.725213795674634 40-41 22.10754113475911 27.527352038929877 28.61775092967437 21.74735589663665 42-43 21.983926036017078 27.625482022062087 28.405820190506535 21.984771751414304 44-45 22.099788032708787 27.70252542571824 28.242391847199432 21.955294694373546 46-47 22.166500760858362 27.74072132400317 27.933973606215762 22.158804308922704 48-49 22.14764245546883 27.84818738202926 27.883267011092283 22.120903151409628 50-51 22.136708141554784 27.94282766167798 27.752240647791083 22.168223548976155 52-53 22.2940388223903 27.86947336700416 27.634071917193516 22.20241589341203 54-55 22.34303680212623 27.76561716237459 27.67681801960771 22.214528015891474 56-57 22.223722693436724 27.863914141054224 27.660835509482375 22.25152765602668 58-59 22.20347401302283 27.868748790936426 27.67823443230995 22.249542763730787 60-61 22.26442650007254 27.87013403243948 27.69308932602582 22.172350141462164 62-63 22.23579410228095 27.965105035961376 27.64157002279261 22.15753083896507 64-65 22.22956493542027 27.872636317118292 27.616165248471813 22.281633498989624 66-67 22.27882976768859 27.946766480652624 27.434885677845084 22.339518073813704 68-69 22.206972941650427 27.96552889912382 27.493750372876384 22.333747786349367 70-71 22.22851272720323 27.76627426908674 27.57144101487879 22.433771988831243 72-73 22.308212273200887 27.780987474634188 27.454211145951675 22.456589106213247 74-75 22.215622996647756 27.92088155676444 27.40574643601732 22.457749010570485 76-77 22.352731653143728 27.82296636634216 27.36739811478247 22.456903865731636 78-79 22.329394234886937 27.822395862360793 27.285952077427506 22.562257825324767 80-81 22.283310913675237 27.890961604707755 27.301721736193958 22.524005745423054 82-83 22.393172455167882 27.84005698710607 27.376431495086788 22.39033906263926 84-85 22.410138139931878 27.834045420680326 27.364874845769616 22.39094159361818 86-87 22.29928200535672 27.888668317718494 27.417070310100407 22.39497936682438 88-89 22.367778454401098 27.88641205775647 27.3519336840934 22.39387580374903 90-91 22.418639558126827 27.934500708054564 27.332160576450313 22.31469915736829 92-93 22.443112221943323 27.867557735700533 27.36472357762408 22.32460646473207 94-95 22.27340888614729 27.85811701972011 27.455491916267675 22.412982177864922 96-97 22.37569932748146 27.986188798076185 27.49917538795861 22.138936486483747 98-99 23.487376954201444 29.85201410691986 27.73109052588522 18.929518412993474 100 22.412788687637665 30.840085398507483 21.5810746290915 25.16605128476336 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2250.0 1 1970.5 2 2511.0 3 3479.0 4 4542.0 5 7254.5 6 9593.5 7 11072.0 8 11921.5 9 11744.0 10 10988.5 11 10191.0 12 11251.0 13 14987.0 14 23483.5 15 35353.0 16 45454.0 17 51658.0 18 52998.5 19 49899.5 20 44361.5 21 38978.0 22 35696.5 23 36445.0 24 41748.5 25 51552.5 26 65121.5 27 80856.0 28 99067.0 29 120424.5 30 142374.5 31 163574.5 32 187364.0 33 210640.0 34 232273.0 35 254350.5 36 276692.5 37 295523.0 38 310185.0 39 323778.5 40 336913.0 41 348000.5 42 352535.0 43 356942.5 44 361907.0 45 365162.5 46 366922.5 47 365006.0 48 361484.0 49 356138.5 50 348011.5 51 335484.5 52 320332.0 53 302391.5 54 282372.0 55 261954.5 56 239466.5 57 215913.0 58 191382.0 59 165444.0 60 138349.0 61 112461.5 62 89273.5 63 68589.0 64 50710.0 65 37272.5 66 28452.5 67 21964.5 68 16920.5 69 12361.5 70 8697.5 71 6349.0 72 4472.5 73 3011.0 74 2020.5 75 1361.0 76 938.0 77 589.0 78 357.0 79 238.5 80 166.0 81 120.0 82 88.0 83 68.0 84 51.0 85 33.0 86 21.5 87 15.0 88 10.0 89 5.5 90 3.0 91 2.5 92 3.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.7869230514078776E-4 7 0.0 8 0.0 9 0.0 10-11 0.005450115306794027 12-13 3.3504807213897704E-5 14-15 0.004154596094523315 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 107.0 20-21 514.0 22-23 1139.0 24-25 2706.0 26-27 3370.0 28-29 5816.0 30-31 13491.0 32-33 17232.0 34-35 24192.0 36-37 34960.0 38-39 41081.0 40-41 46225.0 42-43 56415.0 44-45 68599.0 46-47 67754.0 48-49 59603.0 50-51 50388.0 52-53 47047.0 54-55 50584.0 56-57 54599.0 58-59 56217.0 60-61 56954.0 62-63 57091.0 64-65 61039.0 66-67 64731.0 68-69 67851.0 70-71 67309.0 72-73 65066.0 74-75 66606.0 76-77 66168.0 78-79 71159.0 80-81 72582.0 82-83 70835.0 84-85 71887.0 86-87 75089.0 88-89 81281.0 90-91 84934.0 92-93 89960.0 94-95 109040.0 96-97 302796.0 98-99 560891.0 100-101 6088631.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.99946908880848 #Duplication Level Percentage of deduplicated Percentage of total 1 89.62574443379656 76.1814069356194 2 7.284248657606464 12.383145372148308 3 1.7384226478420854 4.432950063556138 4 0.625870270837208 2.1279456295852586 5 0.27703452933603917 1.1773893956415635 6 0.14718050696431423 0.7506158971313034 7 0.0904643766612059 0.5382596791356749 8 0.05777279380412599 0.39285254409023307 9 0.03478281446559886 0.2660868686691388 >10 0.11513952298268858 1.5051739029834335 >50 0.002698734423356448 0.15510991348724937 >100 6.189928644998873E-4 0.07948277864866504 >500 2.1718415838408864E-5 0.009581019303559412 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.1168269071299235E-5 0.0 0.0 0.0 4 0.0 5.584134535649618E-5 0.0 0.0 0.0 5 0.0 5.584134535649618E-5 0.0 0.0 0.0 6 0.0 5.584134535649618E-5 0.0 0.0 1.1168269071299235E-5 7 2.233653814259847E-5 5.584134535649618E-5 0.0 0.0 1.1168269071299235E-5 8 2.233653814259847E-5 5.584134535649618E-5 0.0 0.0 1.1168269071299235E-5 9 2.233653814259847E-5 1.1168269071299235E-4 0.0 0.0 1.1168269071299235E-5 10-11 3.3504807213897704E-5 1.1168269071299235E-4 0.0 0.0 1.1168269071299235E-5 12-13 4.467307628519694E-5 1.1726682524864196E-4 0.0 1.1168269071299235E-5 1.1168269071299235E-5 14-15 5.0257210820846556E-5 1.89860574212087E-4 0.0 1.1168269071299235E-5 1.6752403606948852E-5 16-17 5.584134535649618E-5 1.89860574212087E-4 0.0 1.1168269071299235E-5 2.233653814259847E-5 18-19 5.584134535649618E-5 1.89860574212087E-4 0.0 1.1168269071299235E-5 2.233653814259847E-5 20-21 5.584134535649618E-5 1.89860574212087E-4 0.0 1.6752403606948852E-5 2.233653814259847E-5 22-23 8.934615257039387E-5 1.9544470874773663E-4 0.0 4.467307628519694E-5 2.233653814259847E-5 24-25 1.2285095978429157E-4 2.959591303894297E-4 0.0 6.142547989214579E-5 2.233653814259847E-5 26-27 1.2285095978429157E-4 3.238798030676778E-4 0.0 1.3960336339124044E-4 2.233653814259847E-5 28-29 1.3401922885559082E-4 3.2946393760332744E-4 0.0 4.132259556380717E-4 2.233653814259847E-5 30-31 1.4518749792689006E-4 3.79721148424174E-4 0.0 0.0014518749792689005 2.233653814259847E-5 32-33 1.4518749792689006E-4 3.79721148424174E-4 0.0 0.004160180229058965 2.233653814259847E-5 34-35 1.5635576699818928E-4 4.5231489738761907E-4 0.0 0.008197509498333639 2.233653814259847E-5 36-37 1.89860574212087E-4 5.360769154223633E-4 0.0 0.014423819505582962 2.233653814259847E-5 38-39 1.89860574212087E-4 5.528293190293122E-4 0.0 0.032019427427414905 2.233653814259847E-5 40-41 1.89860574212087E-4 6.142547989214579E-4 0.0 0.0510389896558375 2.233653814259847E-5 42-43 1.9544470874773663E-4 6.310072025284067E-4 0.0 0.0619783092111751 2.233653814259847E-5 44-45 2.0102884328338622E-4 6.756802788136036E-4 0.0 0.07641329698582937 2.233653814259847E-5 46-47 2.1219711235468547E-4 7.091850860275014E-4 0.0 0.09144578715579814 2.233653814259847E-5 48-49 2.177812468903351E-4 7.14769220563151E-4 0.0 0.1067239792453355 2.233653814259847E-5 50-51 2.3453365049728393E-4 7.87362969526596E-4 0.0 0.12118130355813234 2.233653814259847E-5 52-53 2.4570191956858314E-4 8.041153731335449E-4 0.0 0.16143732942563044 2.792067267824809E-5 54-55 2.568701886398824E-4 8.152836422048442E-4 0.0 0.21209659793304378 3.3504807213897704E-5 56-57 2.792067267824809E-4 8.376201803474426E-4 0.0 0.2640402173836565 3.3504807213897704E-5 58-59 3.0154326492507936E-4 8.655408530256907E-4 0.0 0.302855536540957 3.3504807213897704E-5 60-61 3.0154326492507936E-4 8.767091220969899E-4 0.0 0.32983249048268026 3.3504807213897704E-5 62-63 3.0154326492507936E-4 8.822932566326395E-4 0.0 0.3474113460009053 3.3504807213897704E-5 64-65 3.0154326492507936E-4 9.325504674534862E-4 0.0 0.3524705718902038 3.3504807213897704E-5 66-67 3.0712739946072896E-4 9.437187365247854E-4 0.0 0.3569322953841879 3.3504807213897704E-5 68-69 3.1271153399637855E-4 9.772235437386831E-4 0.0 0.3616341366632049 3.3504807213897704E-5 70-71 3.1271153399637855E-4 0.0010163124854882305 0.0 0.36590599958297687 3.3504807213897704E-5 72-73 3.1271153399637855E-4 0.0010498172927021281 0.0 0.36934582645693703 3.3504807213897704E-5 74-75 3.1271153399637855E-4 0.001066569696309077 0.0 0.37236684324072344 3.3504807213897704E-5 76-77 3.1271153399637855E-4 0.0011112427725942738 0.0 0.37535993935183165 3.3504807213897704E-5 78-79 3.1829566853202814E-4 0.0011279951762012228 0.0 0.3774595739372359 3.3504807213897704E-5 80-81 3.238798030676778E-4 0.0011391634452725219 0.0 0.3781296700815139 3.3504807213897704E-5 82-83 3.238798030676778E-4 0.0011559158488794708 0.0 0.3785819849789015 3.3504807213897704E-5 84-85 3.238798030676778E-4 0.0011950047906290181 0.0 0.3787439248804353 3.3504807213897704E-5 86-87 3.238798030676778E-4 0.0012285095978429158 0.0 0.3788165186293988 4.467307628519694E-5 88 3.238798030676778E-4 0.0012955192122707112 0.0 0.3788276868984701 4.467307628519694E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12530 0.0 51.08595 1 GTATCAA 22565 0.0 37.33743 1 TCAACGC 26995 0.0 30.537281 4 ATCAACG 27255 0.0 30.35705 3 CAACGCA 27605 0.0 29.866154 5 TATCAAC 28455 0.0 29.289633 2 AACGCAG 28300 0.0 29.270254 6 ACGCAGA 32240 0.0 25.639515 7 CGCAGAG 33205 0.0 24.89494 8 GTACATG 29095 0.0 21.584354 1 GCAGAGT 38570 0.0 21.332363 9 TACATGG 29335 0.0 21.06866 2 GAGTACT 21880 0.0 20.836178 12-13 ACATGGG 29120 0.0 20.64497 3 GTGGTAT 6075 0.0 19.43601 1 TGGTATC 5700 0.0 19.42477 2 CAGAGTA 38005 0.0 19.088438 10-11 AGAGTAC 34770 0.0 18.886227 10-11 GTACTTT 24445 0.0 18.570276 14-15 CATGGGG 20300 0.0 18.429386 4 >>END_MODULE