##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139527_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9386097 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61626211619164 33.0 33.0 33.0 33.0 33.0 2 32.624683507958636 33.0 33.0 33.0 33.0 33.0 3 32.62332724667133 33.0 33.0 33.0 33.0 33.0 4 36.53156194742074 37.0 37.0 37.0 37.0 37.0 5 36.55409399668467 37.0 37.0 37.0 37.0 37.0 6 36.539115033650305 37.0 37.0 37.0 37.0 37.0 7 36.50822221419617 37.0 37.0 37.0 37.0 37.0 8 36.50570647202986 37.0 37.0 37.0 37.0 37.0 9 36.5456161384226 37.0 37.0 37.0 37.0 37.0 10-11 36.468380840300284 37.0 37.0 37.0 37.0 37.0 12-13 36.46828026601472 37.0 37.0 37.0 37.0 37.0 14-15 38.52346028386453 40.0 37.0 40.0 37.0 40.0 16-17 38.45926677510364 40.0 37.0 40.0 37.0 40.0 18-19 38.48151579937859 40.0 37.0 40.0 37.0 40.0 20-21 38.47197800657967 40.0 37.0 40.0 37.0 40.0 22-23 38.47958301068807 40.0 37.0 40.0 37.0 40.0 24-25 38.46843735513309 40.0 37.0 40.0 37.0 40.0 26-27 38.36141030564407 40.0 37.0 40.0 37.0 40.0 28-29 38.29132052642257 40.0 37.0 40.0 37.0 40.0 30-31 38.237213507998135 40.0 37.0 40.0 37.0 40.0 32-33 38.17281661183205 40.0 37.0 40.0 37.0 40.0 34-35 38.13437037342651 40.0 37.0 40.0 37.0 40.0 36-37 38.07613770493016 40.0 37.0 40.0 33.0 40.0 38-39 38.02005278052248 40.0 37.0 40.0 33.0 40.0 40-41 38.00048768414502 40.0 37.0 40.0 33.0 40.0 42-43 37.94942693186228 40.0 37.0 40.0 33.0 40.0 44-45 37.885490154193 40.0 37.0 40.0 33.0 40.0 46-47 37.850368496902675 40.0 37.0 40.0 33.0 40.0 48-49 37.82929203354627 40.0 37.0 40.0 33.0 40.0 50-51 37.74936632828512 40.0 37.0 40.0 33.0 40.0 52-53 37.6527288273313 40.0 37.0 40.0 33.0 40.0 54-55 37.46171035459855 40.0 37.0 40.0 33.0 40.0 56-57 37.38502913900237 40.0 37.0 40.0 33.0 40.0 58-59 37.2716752608302 38.5 37.0 40.0 33.0 40.0 60-61 37.13687837080239 37.0 37.0 40.0 33.0 40.0 62-63 36.97849694172655 37.0 37.0 40.0 33.0 40.0 64-65 36.80402664925957 37.0 37.0 40.0 33.0 40.0 66-67 36.603148750535226 37.0 37.0 40.0 33.0 40.0 68-69 36.399474607259535 37.0 37.0 40.0 33.0 40.0 70-71 36.13232266891366 37.0 37.0 38.5 33.0 40.0 72-73 35.91405330374098 37.0 37.0 37.0 33.0 40.0 74-75 35.72306068676963 37.0 35.0 37.0 33.0 40.0 76-77 34.0872137188999 35.0 33.0 37.0 30.0 37.0 78-79 35.17630839643076 37.0 33.0 37.0 33.0 37.0 80-81 35.223561886332014 37.0 33.0 37.0 33.0 37.0 82-83 35.09796945037668 37.0 33.0 37.0 33.0 37.0 84-85 34.933255168572586 37.0 33.0 37.0 33.0 37.0 86-87 34.854632047619305 37.0 33.0 37.0 33.0 37.0 88-89 34.75137654065542 37.0 33.0 37.0 33.0 37.0 90-91 34.640291541331436 37.0 33.0 37.0 33.0 37.0 92-93 34.61283190501106 37.0 33.0 37.0 33.0 37.0 94-95 34.636178205303025 37.0 33.0 37.0 33.0 37.0 96-97 34.633451498632844 37.0 33.0 37.0 33.0 37.0 98-99 34.61922030569565 37.0 33.0 37.0 33.0 37.0 100 34.60440445520447 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 5.0 19 16.0 20 64.0 21 381.0 22 1293.0 23 3802.0 24 8924.0 25 17259.0 26 30061.0 27 47368.0 28 70323.0 29 98889.0 30 133638.0 31 178597.0 32 236098.0 33 317532.0 34 436193.0 35 635949.0 36 1111599.0 37 2680535.0 38 3299482.0 39 78088.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.961882239231066 20.734475682490817 14.767448067071967 23.53619401120615 2 14.36934862275555 21.23347968809613 42.0530706213669 22.344101067781423 3 17.449713123569893 27.121539442858943 30.9637115405903 24.465035892980865 4 12.008058301549623 18.8009670047092 39.51590314909381 29.675071544647363 5 12.834354897461639 38.27678320392385 35.963819679255394 12.925042219359122 6 28.78841391272293 38.75095953211589 19.2217202379906 13.238906317170576 7 25.80104382045061 33.15707263626191 23.54780693189086 17.494076611396622 8 24.25561977465181 36.66480327232928 21.445079887838364 17.634497065180554 9 25.494036552147286 16.945701711797778 21.345986516014058 36.214275220040875 10-11 23.779529085934556 26.972216749902163 29.23450760146987 20.013746562693413 12-13 24.892002455121638 24.58335965774045 29.084060854713456 21.44057703242446 14-15 22.050568337095257 26.001689802002296 26.763144842987458 25.18459701791499 16-17 21.409127776966294 29.126851128855797 27.438353769410224 22.025667324767685 18-19 21.420362478674576 28.1169478644851 29.23424401005018 21.22844564679014 20-21 22.275884435670974 27.308400327641376 29.162804478901904 21.252910757785745 22-23 22.065803161421833 27.31851222168461 28.963559291603342 21.652125325290214 24-25 21.82951347647206 27.531184707144305 29.09058258878496 21.548719227598674 26-27 21.78256258970456 27.70949490181178 29.003969788372125 21.50397272011153 28-29 21.543490753673915 27.50734014858628 29.154207327947002 21.794961769792803 30-31 22.001422370935636 27.488172351560046 29.034696499306428 21.475708778197884 32-33 21.916345540794683 27.556446643649863 29.040888913839357 21.486318901716103 34-35 21.70508783840877 27.64929105639009 29.17991891097294 21.4657021942282 36-37 21.873545835584842 27.572601938101194 28.882267624190543 21.671584602123417 38-39 21.6301886890213 27.692571074455056 28.997327372837024 21.679912863686624 40-41 21.82635466764694 27.539388648732317 29.02812136865853 21.606135314962213 42-43 21.850199511033807 27.574440597937546 28.757741401151886 21.817618489876757 44-45 21.807527556754362 27.84047537838531 28.537818209180333 21.814178855679994 46-47 22.050356361777336 27.675238479917365 28.069134173728315 22.205270984576984 48-49 21.93367660107119 27.81293005904028 28.113478157061007 22.13991518282752 50-51 21.91123280699259 27.95563601756229 28.02003085084638 22.11310032459874 52-53 22.024795960543695 27.93542310848924 28.029186590346526 22.01059434062054 54-55 22.084219858962797 27.861809385917574 27.917742403711486 22.136228351408143 56-57 22.12624814191215 28.033641627674072 27.701874794460572 22.1382354359532 58-59 21.847814990356877 28.088224008915596 27.97347214326158 22.090488857465946 60-61 22.211072322267544 28.238570619678594 27.749048391216526 21.801308666837336 62-63 21.8939526128962 28.321021103964906 27.786233393104276 21.998792890034622 64-65 21.91259754898352 28.098209708660267 27.779744847337096 22.209447895019117 66-67 22.040938624654814 28.117863110656042 27.741201880713078 22.099996383976066 68-69 21.973748372391047 28.187471990665724 27.74024666154536 22.098532975397866 70-71 21.9884201659518 27.953553585778877 27.654877859860772 22.403148388408546 72-73 22.061481529980195 27.98755019489737 27.541569267814264 22.40939900730817 74-75 21.99286983421162 28.145047747184176 27.66554892698405 22.19653349162015 76-77 22.076909729190735 27.887043042208663 27.632153371047114 22.403893857553488 78-79 22.07676711342234 27.830279862852443 27.403666567644436 22.689286456080783 80-81 22.167203490417712 28.14461962368223 27.38078438382972 22.307392502070336 82-83 22.322532704077673 27.88495062382111 27.489587888476013 22.3029287836252 84-85 22.18812576308253 27.873937960995836 27.387129447508613 22.55080682841302 86-87 22.01394067526978 28.122279217663955 27.51084803033802 22.352932076728248 88-89 22.302268552943872 28.013897377556635 27.507604992505673 22.176229076993824 90-91 22.361144259924842 28.104411223815973 27.42519064654989 22.109253869709296 92-93 22.234980335549437 27.89108297065707 27.46219075599396 22.411745937799537 94-95 22.180582168004335 28.01778358586385 27.589525776038077 22.212108470093735 96-97 22.437679951967716 27.997021221541967 27.643854916701383 21.921443909788938 98-99 23.26224031933505 29.992704783463616 27.90645969839256 18.83859519880878 100 22.22533619018854 30.97447103836209 21.791063900831904 25.00912887061747 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2330.0 1 2076.0 2 2788.0 3 3969.0 4 5307.5 5 8485.0 6 10976.5 7 12411.0 8 13168.0 9 12873.5 10 12030.5 11 11041.5 12 11970.0 13 15973.0 14 25643.0 15 39412.0 16 51168.0 17 58302.0 18 60018.5 19 56579.0 20 50029.5 21 42954.5 22 38269.0 23 38082.5 24 42980.5 25 52862.5 26 66967.5 27 83227.0 28 100789.0 29 122520.0 30 146141.5 31 169893.5 32 197251.0 33 225847.0 34 253443.0 35 279146.5 36 307579.0 37 332017.5 38 345323.0 39 355629.0 40 364891.0 41 369475.0 42 369875.5 43 375127.0 44 380618.0 45 381658.0 46 379712.5 47 374290.0 48 371491.0 49 371340.5 50 369370.5 51 356912.0 52 335966.0 53 316494.0 54 295823.0 55 270824.5 56 244111.0 57 217729.0 58 192527.0 59 166634.5 60 137578.0 61 109184.5 62 85258.5 63 64891.0 64 47453.0 65 34739.0 66 26239.0 67 20011.5 68 15119.0 69 10868.0 70 7591.5 71 5305.0 72 3601.0 73 2400.0 74 1552.0 75 1002.0 76 646.5 77 396.5 78 256.5 79 177.0 80 116.5 81 72.5 82 49.0 83 34.5 84 28.0 85 25.0 86 20.0 87 16.5 88 13.0 89 8.5 90 6.0 91 6.0 92 5.5 93 3.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.2784866808855696E-4 7 0.0 8 0.0 9 0.0 10-11 0.005092638612194185 12-13 4.261622269618564E-5 14-15 0.004069849267485729 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 122.0 20-21 608.0 22-23 1301.0 24-25 3071.0 26-27 3804.0 28-29 6456.0 30-31 14545.0 32-33 18814.0 34-35 25958.0 36-37 36953.0 38-39 43359.0 40-41 49150.0 42-43 60639.0 44-45 73567.0 46-47 72513.0 48-49 64207.0 50-51 54345.0 52-53 51787.0 54-55 58672.0 56-57 63681.0 58-59 42174.0 60-61 69988.0 62-63 70178.0 64-65 72267.0 66-67 77377.0 68-69 70368.0 70-71 69317.0 72-73 66261.0 74-75 68551.0 76-77 68044.0 78-79 73636.0 80-81 75670.0 82-83 73519.0 84-85 73463.0 86-87 77945.0 88-89 84657.0 90-91 88934.0 92-93 92722.0 94-95 112595.0 96-97 333212.0 98-99 584629.0 100-101 6337038.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.34057688910454 #Duplication Level Percentage of deduplicated Percentage of total 1 88.50453000881963 73.76018588234092 2 7.866859787112839 13.112572659273642 3 2.064205953359347 5.1609634491267595 4 0.7211207513875278 2.403944777093644 5 0.32906903712624735 1.3712401695221808 6 0.17590522217941382 0.8796025616543074 7 0.10675143375883961 0.6227708251240505 8 0.06098652957578302 0.40661220458481545 9 0.03679735055186434 0.27600411806846853 >10 0.13039024644598254 1.6797813133050228 >50 0.0025665426670247187 0.14678723663138768 >100 7.085970619147304E-4 0.10031230196180657 >500 6.512465668302597E-5 0.033361108026800826 >1k 4.341529682986145E-5 0.04586139328617177 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.065405567404641E-5 2 0.0 1.065405567404641E-5 0.0 1.065405567404641E-5 1.065405567404641E-5 3 0.0 1.065405567404641E-5 0.0 1.065405567404641E-5 1.065405567404641E-5 4 0.0 4.261622269618564E-5 0.0 2.130811134809282E-5 1.065405567404641E-5 5 0.0 4.261622269618564E-5 0.0 3.196216702213923E-5 1.065405567404641E-5 6 0.0 4.261622269618564E-5 0.0 3.196216702213923E-5 2.130811134809282E-5 7 0.0 4.261622269618564E-5 0.0 4.261622269618564E-5 2.130811134809282E-5 8 0.0 4.261622269618564E-5 0.0 5.3270278370232054E-5 2.130811134809282E-5 9 2.130811134809282E-5 1.1719461241451053E-4 0.0 1.1719461241451053E-4 2.130811134809282E-5 10-11 2.130811134809282E-5 1.1719461241451053E-4 0.0 1.2784866808855693E-4 2.130811134809282E-5 12-13 2.130811134809282E-5 1.1719461241451053E-4 0.0 1.2784866808855693E-4 2.130811134809282E-5 14-15 2.130811134809282E-5 1.4915677943664978E-4 0.0 1.3850272376260335E-4 3.196216702213923E-5 16-17 2.130811134809282E-5 1.6513786294771937E-4 0.0 1.3850272376260335E-4 4.794325053320885E-5 18-19 2.130811134809282E-5 1.917730021328354E-4 0.0 1.3850272376260335E-4 6.925136188130166E-5 20-21 2.6635139185116027E-5 2.1308111348092822E-4 0.0 1.5448380727367295E-4 9.58865010664177E-5 22-23 3.196216702213923E-5 2.5037030834009063E-4 0.0 1.5981083511069617E-4 1.1719461241451052E-4 24-25 3.196216702213923E-5 2.716784196881835E-4 0.0 1.7046489078474257E-4 1.4915677943664975E-4 26-27 3.196216702213923E-5 2.876595031992531E-4 0.0 2.2906219699199784E-4 1.4915677943664975E-4 28-29 3.196216702213923E-5 2.876595031992531E-4 0.0 4.368162826359029E-4 1.5448380727367295E-4 30-31 4.261622269618564E-5 3.782189764286476E-4 0.0 0.0014382975159962655 1.5981083511069617E-4 32-33 4.261622269618564E-5 3.9420005993971724E-4 0.0 0.0038407870704937315 1.5981083511069617E-4 34-35 1.1719461241451053E-4 4.634514218210189E-4 0.0 0.006845230770574819 1.5981083511069617E-4 36-37 1.1719461241451053E-4 5.327027837023206E-4 0.0 0.011943196410606028 1.5981083511069617E-4 38-39 1.3850272376260333E-4 5.593379228874366E-4 0.0 0.02779110422575006 1.6513786294771937E-4 40-41 1.4915677943664975E-4 6.285892847687382E-4 0.0 0.04535431500441557 1.7046489078474257E-4 42-43 1.4915677943664975E-4 6.445703682798078E-4 0.0 0.05570473009175166 1.757919186217658E-4 44-45 1.4915677943664975E-4 7.138217301611096E-4 0.0 0.06861744556869592 1.81118946458789E-4 46-47 1.7046489078474257E-4 7.564379528572952E-4 0.0 0.08233986927686769 1.971000299698586E-4 48-49 1.81118946458789E-4 7.564379528572952E-4 0.0 0.09576397942616617 2.0242705780688182E-4 50-51 1.81118946458789E-4 8.363433704126433E-4 0.0 0.1083304380937039 2.0242705780688182E-4 52-53 1.81118946458789E-4 8.416703982496665E-4 0.0 0.14507627611349 2.1308111348092822E-4 54-55 1.9177300213283542E-4 8.469974260866897E-4 0.0 0.18978069372178874 2.2373516915497464E-4 56-57 2.3971625266604426E-4 8.523244539237129E-4 0.0 0.23854430654189915 2.3971625266604426E-4 58-59 2.770054475252067E-4 8.523244539237129E-4 0.0 0.4054454157036732 2.4504328050306746E-4 60-61 2.770054475252067E-4 8.736325652718058E-4 0.0 0.5480606049564585 2.4504328050306746E-4 62-63 2.770054475252067E-4 8.842866209458521E-4 0.0 0.5544477113330493 2.4504328050306746E-4 64-65 2.823324753622299E-4 9.908271776863163E-4 0.0 0.5593911931658069 2.4504328050306746E-4 66-67 2.9298653103627633E-4 0.0010014812333603627 0.0 0.5643400020264013 2.4504328050306746E-4 68-69 2.983135588732995E-4 0.001012135289034409 0.0 0.5689745162446116 2.4504328050306746E-4 70-71 2.983135588732995E-4 0.0010227893447084554 0.0 0.5730656736234454 2.4504328050306746E-4 72-73 2.983135588732995E-4 0.0010547515117305946 0.0 0.5763045065483555 2.5569733617711386E-4 74-75 3.0896761454734595E-4 0.0010973677344267804 0.0 0.578952039383356 2.5569733617711386E-4 76-77 3.0896761454734595E-4 0.0011453109849599893 0.0 0.58145041543892 2.610243640141371E-4 78-79 3.0896761454734595E-4 0.0011719461241451053 0.0 0.5831710454302784 2.663513918511603E-4 80-81 3.249486980584156E-4 0.0011719461241451053 0.0 0.5836824401026326 2.823324753622299E-4 82-83 3.4092978156948514E-4 0.0011772731519821287 0.0 0.5841405644966167 2.983135588732995E-4 84-85 3.515838372435316E-4 0.0011826001798191518 0.0 0.5843216834430753 2.983135588732995E-4 86-87 3.62237892917578E-4 0.001193254235493198 0.0 0.584428223999816 3.036405867103227E-4 88 3.62237892917578E-4 0.001267832625211523 0.0 0.58443887805549 3.0896761454734595E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14005 0.0 50.32868 1 GTATCAA 24505 0.0 36.073456 1 TCAACGC 29855 0.0 29.045572 4 ATCAACG 30170 0.0 28.742008 3 CAACGCA 30310 0.0 28.555027 5 TATCAAC 31090 0.0 28.09974 2 AACGCAG 31155 0.0 27.946812 6 ACGCAGA 35195 0.0 24.763353 7 CGCAGAG 36115 0.0 24.14474 8 GTACATG 31430 0.0 22.192663 1 TACATGG 31870 0.0 21.466423 2 GCAGAGT 41475 0.0 20.994188 9 ACATGGG 32120 0.0 20.640879 3 GAGTACT 23730 0.0 20.091202 12-13 CTTATAC 12035 0.0 19.295172 1 CAGAGTA 40650 0.0 19.158136 10-11 CATGGGG 21590 0.0 18.672882 4 AGAGTAC 38370 0.0 18.423271 10-11 GTGGTAT 7080 0.0 18.350407 1 GTACTTT 26040 0.0 18.209604 14-15 >>END_MODULE