##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139526_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10522312 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64322945375503 33.0 33.0 33.0 33.0 33.0 2 32.649282115945624 33.0 33.0 33.0 33.0 33.0 3 32.65090561846104 33.0 33.0 33.0 33.0 33.0 4 36.56321376898917 37.0 37.0 37.0 37.0 37.0 5 36.5837488947296 37.0 37.0 37.0 37.0 37.0 6 36.567769516813414 37.0 37.0 37.0 37.0 37.0 7 36.534617106962806 37.0 37.0 37.0 37.0 37.0 8 36.53280695345281 37.0 37.0 37.0 37.0 37.0 9 36.57097774709589 37.0 37.0 37.0 37.0 37.0 10-11 36.4965906257104 37.0 37.0 37.0 37.0 37.0 12-13 36.49575050616252 37.0 37.0 37.0 37.0 37.0 14-15 38.59712181125213 40.0 37.0 40.0 37.0 40.0 16-17 38.53635565073532 40.0 37.0 40.0 37.0 40.0 18-19 38.55113282137994 40.0 37.0 40.0 37.0 40.0 20-21 38.53706204747422 40.0 37.0 40.0 37.0 40.0 22-23 38.5447031008227 40.0 37.0 40.0 37.0 40.0 24-25 38.53168146569658 40.0 37.0 40.0 37.0 40.0 26-27 38.434067959443176 40.0 37.0 40.0 37.0 40.0 28-29 38.37671131894135 40.0 37.0 40.0 37.0 40.0 30-31 38.325357941647056 40.0 37.0 40.0 37.0 40.0 32-33 38.26186657346888 40.0 37.0 40.0 37.0 40.0 34-35 38.230045960405796 40.0 37.0 40.0 37.0 40.0 36-37 38.17215307046611 40.0 37.0 40.0 37.0 40.0 38-39 38.123680596060844 40.0 37.0 40.0 37.0 40.0 40-41 38.095105718681594 40.0 37.0 40.0 35.0 40.0 42-43 38.03810583074827 40.0 37.0 40.0 33.0 40.0 44-45 37.97431876138298 40.0 37.0 40.0 33.0 40.0 46-47 37.93157930665271 40.0 37.0 40.0 33.0 40.0 48-49 37.90679921005355 40.0 37.0 40.0 33.0 40.0 50-51 37.82499228664784 40.0 37.0 40.0 33.0 40.0 52-53 37.72059544871685 40.0 37.0 40.0 33.0 40.0 54-55 37.522857641717266 40.0 37.0 40.0 33.0 40.0 56-57 37.43859180881181 40.0 37.0 40.0 33.0 40.0 58-59 37.32010356406924 38.5 37.0 40.0 33.0 40.0 60-61 37.17820137047296 37.0 37.0 40.0 33.0 40.0 62-63 37.01778121563307 37.0 37.0 40.0 33.0 40.0 64-65 36.83527181364181 37.0 37.0 40.0 33.0 40.0 66-67 36.62336916892503 37.0 37.0 40.0 33.0 40.0 68-69 36.412435660100606 37.0 37.0 40.0 33.0 40.0 70-71 36.14339881478833 37.0 37.0 38.5 33.0 40.0 72-73 35.927392167546884 37.0 37.0 37.0 33.0 40.0 74-75 35.727498990699026 37.0 35.0 37.0 33.0 40.0 76-77 34.080528059491925 35.0 33.0 37.0 30.0 37.0 78-79 35.16504858556921 37.0 33.0 37.0 33.0 37.0 80-81 35.212448746119136 37.0 33.0 37.0 33.0 37.0 82-83 35.09133459782278 37.0 33.0 37.0 33.0 37.0 84-85 34.931267901776984 37.0 33.0 37.0 33.0 37.0 86-87 34.8519602073968 37.0 33.0 37.0 33.0 37.0 88-89 34.75215864176315 37.0 33.0 37.0 33.0 37.0 90-91 34.65067088367629 37.0 33.0 37.0 33.0 37.0 92-93 34.634798356036114 37.0 33.0 37.0 33.0 37.0 94-95 34.650658822109605 37.0 33.0 37.0 33.0 37.0 96-97 34.63832265881097 37.0 33.0 37.0 33.0 37.0 98-99 34.622009903797796 37.0 33.0 37.0 33.0 37.0 100 34.60078728990767 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 7.0 20 74.0 21 350.0 22 1433.0 23 4095.0 24 9367.0 25 18489.0 26 32734.0 27 51755.0 28 76563.0 29 107134.0 30 146261.0 31 195065.0 32 256738.0 33 344164.0 34 474754.0 35 694810.0 36 1226963.0 37 3049003.0 38 3744588.0 39 87963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.440578838567035 20.241254963738005 14.492309294763356 23.8258569029316 2 14.482282981154713 21.107262358310606 41.60872629513362 22.801728365401065 3 17.677464800511522 26.609513194438637 30.73608727815712 24.976934726892722 4 12.272730555794203 18.451230109884595 39.12631558539606 30.14972374892514 5 13.221733018370868 38.01261547842337 35.675258441300734 13.090393061905026 6 29.604186309474763 38.14653052531581 19.046911706272553 13.202371458936874 7 26.43598669189813 32.781426743476146 23.250641113854066 17.531945450771655 8 24.612927273017565 36.457405938922925 21.243487172781037 17.686179615278466 9 25.81877442904183 16.773528479292384 20.974800975298965 36.43289611636682 10-11 24.143075540376024 26.65026765219789 29.10438884786548 20.102267959560606 12-13 25.177780566560877 24.285048964764062 28.926757205391613 21.61041326328345 14-15 22.287658998726556 25.637408629519054 26.471220252767075 25.603712118987314 16-17 21.804936975828127 28.822852810294926 27.117001472680148 22.255208741196803 18-19 21.934670821393627 27.936588460786943 28.759430436961004 21.36931028085843 20-21 22.715597692201612 27.063438034917674 28.663062557219053 21.557901715661654 22-23 22.45954974002626 27.092837308857163 28.450146869361113 21.997466081755455 24-25 22.26821445844122 27.263975815852547 28.52806808445914 21.93974164124709 26-27 22.14929110353563 27.423557631984323 28.522705288330492 21.904445976149553 28-29 22.080499854430773 27.32088742197682 28.59293083865902 22.005681884933388 30-31 22.264129209358316 27.216359702494607 28.532324354273314 21.98718673387376 32-33 22.044905346825217 27.4432193442993 28.443032112372713 22.068843196502765 34-35 22.25262031542155 27.39268468178685 28.437955259091908 21.916739743699694 36-37 22.18853109232368 27.360428068323213 28.443942019232605 22.0070988201205 38-39 22.083182775603476 27.42012197156878 28.425675541029456 22.071019711798293 40-41 22.337740366660263 27.262438434648136 28.42199171280223 21.977829485889373 42-43 22.219291887206385 27.335826286125087 28.219866990334463 22.225014836334065 44-45 22.236701597367784 27.50021989363869 28.036662966219566 22.226415542773964 46-47 22.38994563191812 27.386224450963976 27.814925289985336 22.408904627132568 48-49 22.289875123183847 27.557649152358383 27.754832166125798 22.397643558331968 50-51 22.240816219310823 27.67085043187924 27.64869322905776 22.439640119752184 52-53 22.3497043090099 27.536514017012248 27.62170965688297 22.492072017094877 54-55 22.42422517650664 27.379703408841593 27.699757347918307 22.496314066733458 56-57 22.34236110147562 27.31101085322606 27.700282383319607 22.64634566197871 58-59 22.132568603660633 27.235627782245963 27.86895577774539 22.76284783634801 60-61 22.35393338783312 27.449447227230433 27.885395253613478 22.311224131322973 62-63 21.990947171045363 27.675950450113245 27.86015728289405 22.472945095947345 64-65 21.936837786185013 27.785426383843397 27.66542733416939 22.6123084958022 66-67 22.00322333537359 28.110063084896293 27.335056631904877 22.551656947825247 68-69 22.0197266605231 28.11660735260221 27.19026450440906 22.67340148246563 70-71 22.02291132066051 27.704430613914926 27.212930567849526 23.05972749757504 72-73 22.20198089605808 27.417760721342745 27.15357351067178 23.226684871927404 74-75 22.237874177907557 27.499165007957295 27.25115844368625 23.011802370448894 76-77 22.50352022178534 27.351833096155744 26.892943269135365 23.251703412923554 78-79 22.60943827118744 27.399984229312274 26.552444602223236 23.438132897277054 80-81 22.485651274918258 27.68727466551842 26.648260490048536 23.17881356951479 82-83 22.539795982203987 27.489201825123477 26.722109719969446 23.24889247270309 84-85 22.562567175473212 27.771207384539387 26.66895178519989 22.997273654787506 86-87 22.795500513339842 27.707852281215118 26.7752354789167 22.72141172652834 88-89 22.69400030747944 27.74551441762038 26.966155783552566 22.59432949134762 90-91 22.652610519342442 27.581127754596984 26.86364840643074 22.90261331962983 92-93 22.637801910756032 27.27464465655795 27.074087253946583 23.013466178739435 94-95 22.143254060036128 27.520243821747798 27.488653564077865 22.847848554138206 96-97 22.294861479167103 27.515341480235644 27.53860249988283 22.651194540714418 98-99 23.482115518396103 29.345000889420565 27.898948863663982 19.27393472851936 100 22.44060687985166 30.450777436194485 21.6181212507574 25.490494433196453 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2228.0 1 1962.0 2 2499.5 3 3511.0 4 4694.0 5 7446.0 6 9752.5 7 11254.0 8 12125.5 9 12054.5 10 11436.5 11 10655.5 12 11594.0 13 15274.0 14 24117.0 15 36470.0 16 46774.5 17 53126.5 18 54854.0 19 51673.0 20 45431.5 21 38911.5 22 34608.0 23 34782.5 24 39702.0 25 49155.5 26 62578.0 27 78358.0 28 96451.0 29 118025.5 30 141269.0 31 165094.5 32 192490.0 33 221073.0 34 248710.5 35 275218.0 36 303485.5 37 329115.0 38 348768.0 39 366450.0 40 382859.5 41 396015.5 42 404100.5 43 413347.0 44 422862.5 45 430448.0 46 434424.5 47 435144.0 48 439802.5 49 438795.5 50 429140.5 51 415607.0 52 397099.0 53 374442.0 54 349312.0 55 322031.5 56 292641.0 57 262865.5 58 231208.0 59 198320.5 60 164817.5 61 132636.5 62 103905.5 63 79163.0 64 58085.0 65 42384.5 66 31743.5 67 24167.0 68 18478.0 69 13532.0 70 9482.0 71 6675.0 72 4612.0 73 3110.5 74 2039.0 75 1289.0 76 833.5 77 520.5 78 337.0 79 217.0 80 144.5 81 103.5 82 75.0 83 56.5 84 40.5 85 28.0 86 21.5 87 18.0 88 14.5 89 13.5 90 12.0 91 8.5 92 6.5 93 3.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.2354699233400418E-4 7 0.0 8 0.0 9 0.0 10-11 0.005146207411451019 12-13 4.751807397461699E-6 14-15 0.004286130272510452 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 138.0 20-21 624.0 22-23 1348.0 24-25 3081.0 26-27 3666.0 28-29 6027.0 30-31 13758.0 32-33 17513.0 34-35 24808.0 36-37 35326.0 38-39 28279.0 40-41 47613.0 42-43 57073.0 44-45 69752.0 46-47 68932.0 48-49 61362.0 50-51 34671.0 52-53 12946.0 54-55 13681.0 56-57 14302.0 58-59 40948.0 60-61 70818.0 62-63 70455.0 64-65 74361.0 66-67 80993.0 68-69 77184.0 70-71 76555.0 72-73 73759.0 74-75 76184.0 76-77 75447.0 78-79 82194.0 80-81 84497.0 82-83 82803.0 84-85 82959.0 86-87 88570.0 88-89 95728.0 90-91 99787.0 92-93 105680.0 94-95 128502.0 96-97 372797.0 98-99 719707.0 100-101 7347484.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.47186383615328 #Duplication Level Percentage of deduplicated Percentage of total 1 87.96335831639894 72.54502109640814 2 8.178583667575154 13.490060772096903 3 2.1204711992762357 5.24637636045583 4 0.8022452249737928 2.646506358289712 5 0.3584427405872485 1.4780720447384585 6 0.18562775837079679 0.918544032754003 7 0.1156399650684378 0.6675930417199206 8 0.07477270801126194 0.4933315675012194 9 0.04644348137401844 0.34472524247594727 >10 0.15047365726799863 1.8673668707126747 >50 0.003181707388746644 0.17493374669830847 >100 6.984118451333294E-4 0.09269843877046102 >500 6.116186220662949E-5 0.03477042737836322 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9007229589846794E-5 0.0 0.0 0.0 3 0.0 1.9007229589846794E-5 0.0 2.851084438477019E-5 0.0 4 0.0 2.851084438477019E-5 0.0 4.751807397461699E-5 0.0 5 0.0 2.851084438477019E-5 0.0 4.751807397461699E-5 0.0 6 3.801445917969359E-5 2.851084438477019E-5 0.0 4.751807397461699E-5 9.503614794923397E-6 7 3.801445917969359E-5 3.801445917969359E-5 0.0 4.751807397461699E-5 9.503614794923397E-6 8 3.801445917969359E-5 3.801445917969359E-5 0.0 4.751807397461699E-5 9.503614794923397E-6 9 3.801445917969359E-5 5.702168876954038E-5 0.0 6.652530356446379E-5 9.503614794923397E-6 10-11 3.801445917969359E-5 6.652530356446379E-5 0.0 9.503614794923398E-5 9.503614794923397E-6 12-13 3.801445917969359E-5 6.652530356446379E-5 0.0 1.0453976274415737E-4 9.503614794923397E-6 14-15 4.751807397461699E-5 9.503614794923398E-5 0.0 1.2829879973146586E-4 2.3759036987308494E-5 16-17 4.751807397461699E-5 9.503614794923398E-5 0.0 1.4730602932131267E-4 2.851084438477019E-5 18-19 4.751807397461699E-5 9.503614794923398E-5 0.0 1.7106506630862114E-4 4.276626657715529E-5 20-21 4.751807397461699E-5 1.0929157014161906E-4 0.0 1.8056868110354453E-4 5.2269881372078684E-5 22-23 4.751807397461699E-5 1.5205783671877436E-4 0.0 1.9957591069339134E-4 5.702168876954038E-5 24-25 4.751807397461699E-5 1.8056868110354453E-4 0.0 2.375903698730849E-4 5.702168876954038E-5 26-27 4.751807397461699E-5 1.9957591069339134E-4 0.0 3.6113736220708906E-4 5.702168876954038E-5 28-29 4.751807397461699E-5 1.9957591069339134E-4 0.0 9.075952129151844E-4 5.702168876954038E-5 30-31 4.751807397461699E-5 2.470939846680083E-4 0.0 0.0030173976973881787 5.702168876954038E-5 32-33 4.751807397461699E-5 2.470939846680083E-4 0.0 0.007983036427735653 5.702168876954038E-5 34-35 4.751807397461699E-5 2.8986025124516364E-4 0.0 0.01502046318337643 5.702168876954038E-5 36-37 5.2269881372078684E-5 3.326265178223189E-4 0.0 0.02805942268201133 5.702168876954038E-5 38-39 5.702168876954038E-5 3.706409770020125E-4 0.0 0.11737439452470141 5.702168876954038E-5 40-41 5.702168876954038E-5 4.276626657715529E-4 0.0 0.2134369328717871 5.702168876954038E-5 42-43 5.702168876954038E-5 4.371662805664763E-4 0.0 0.24270331463275369 5.702168876954038E-5 44-45 5.702168876954038E-5 4.751807397461699E-4 0.0 0.28246168712731573 5.702168876954038E-5 46-47 5.702168876954038E-5 5.0369158413094E-4 0.0 0.32375014160386045 6.177349616700209E-5 48-49 5.702168876954038E-5 5.084433915284017E-4 0.0 0.36549952139795894 8.553253315431057E-5 50-51 6.652530356446379E-5 5.98727732080174E-4 0.0 0.4043122842204261 8.553253315431057E-5 52-53 6.652530356446379E-5 6.129831542725591E-4 0.0 0.7273306474850775 9.028434055177227E-5 54-55 6.652530356446379E-5 6.177349616700208E-4 0.0 1.1670961666979651 9.978795534669567E-5 56-57 6.652530356446379E-5 6.367421912598676E-4 0.0 1.665698565106224 1.0453976274415737E-4 58-59 6.652530356446379E-5 6.46245806054791E-4 0.0 2.1891956824697845 1.0929157014161906E-4 60-61 6.652530356446379E-5 6.605012282471761E-4 0.0 2.3381268299210287 1.1404337753908076E-4 62-63 8.078072575684887E-5 6.652530356446378E-4 0.0 2.344570280751987 1.1404337753908076E-4 64-65 8.553253315431057E-5 7.127711096192548E-4 0.0 2.349958830340708 1.1404337753908076E-4 66-67 8.553253315431057E-5 7.127711096192548E-4 0.0 2.354083399161705 1.1879518493654246E-4 68-69 8.553253315431057E-5 7.270265318116398E-4 0.0 2.35845506196737 1.2354699233400415E-4 70-71 8.553253315431057E-5 7.317783392091015E-4 0.0 2.3624133175294553 1.2354699233400415E-4 72-73 9.503614794923398E-5 7.460337614014867E-4 0.0 2.3653451826936895 1.4255422192385096E-4 74-75 9.503614794923398E-5 7.697927983887952E-4 0.0 2.3677876116959844 1.5205783671877436E-4 76-77 9.503614794923398E-5 8.220626797608738E-4 0.0 2.370101741898549 1.6156145151369775E-4 78-79 9.503614794923398E-5 8.363181019532589E-4 0.0 2.3717363636432753 1.6156145151369775E-4 80-81 9.503614794923398E-5 8.410699093507207E-4 0.0 2.3723636022197403 1.7581687370608285E-4 82-83 9.978795534669567E-5 8.458217167481824E-4 0.0 2.372886301033461 1.9007229589846795E-4 84-85 1.0453976274415737E-4 8.790843685304142E-4 0.0 2.373109635981142 1.9007229589846795E-4 86-87 1.0929157014161906E-4 8.933397907227994E-4 0.0 2.373171409477309 1.9007229589846795E-4 88 1.1404337753908076E-4 9.218506351075695E-4 0.0 2.3731761612847064 1.9007229589846795E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13730 0.0 50.845592 1 GTATCAA 24360 0.0 37.9049 1 TCAACGC 28465 0.0 31.622883 4 ATCAACG 28990 0.0 31.155725 3 CAACGCA 29260 0.0 30.781733 5 TATCAAC 30105 0.0 30.365734 2 AACGCAG 30085 0.0 29.966763 6 ACGCAGA 34100 0.0 26.464125 7 CGCAGAG 35010 0.0 25.75146 8 GCAGAGT 41415 0.0 21.718042 9 GTACATG 33055 0.0 21.451094 1 ATCTCGT 11695 0.0 21.055355 94 GAGTACT 22395 0.0 20.969814 12-13 TACATGG 33310 0.0 20.576437 2 ACATGGG 33530 0.0 20.03626 3 CAGAGTA 40225 0.0 19.630758 10-11 GTGGTAT 6880 0.0 19.045431 1 AGAGTAC 37215 0.0 18.774534 10-11 GTACTTT 25370 0.0 18.588894 14-15 TATCTCG 13015 0.0 18.339231 94 >>END_MODULE