##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139524_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8731839 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.628617637132336 33.0 33.0 33.0 33.0 33.0 2 32.63205322498502 33.0 33.0 33.0 33.0 33.0 3 32.63031143840375 33.0 33.0 33.0 33.0 33.0 4 36.54031916987933 37.0 37.0 37.0 37.0 37.0 5 36.56193729637022 37.0 37.0 37.0 37.0 37.0 6 36.547072959086854 37.0 37.0 37.0 37.0 37.0 7 36.513312831352025 37.0 37.0 37.0 37.0 37.0 8 36.51050620608099 37.0 37.0 37.0 37.0 37.0 9 36.55174036076478 37.0 37.0 37.0 37.0 37.0 10-11 36.47500835734603 37.0 37.0 37.0 37.0 37.0 12-13 36.47451630750406 37.0 37.0 37.0 37.0 37.0 14-15 38.54715404166293 40.0 37.0 40.0 37.0 40.0 16-17 38.48624035555397 40.0 37.0 40.0 37.0 40.0 18-19 38.50444413828519 40.0 37.0 40.0 37.0 40.0 20-21 38.48928316583816 40.0 37.0 40.0 37.0 40.0 22-23 38.49819226722225 40.0 37.0 40.0 37.0 40.0 24-25 38.48585730719158 40.0 37.0 40.0 37.0 40.0 26-27 38.383342340334735 40.0 37.0 40.0 37.0 40.0 28-29 38.32064486216129 40.0 37.0 40.0 37.0 40.0 30-31 38.26796253603315 40.0 37.0 40.0 37.0 40.0 32-33 38.20265376120616 40.0 37.0 40.0 37.0 40.0 34-35 38.16437130754966 40.0 37.0 40.0 37.0 40.0 36-37 38.10721464397216 40.0 37.0 40.0 35.0 40.0 38-39 38.05597644403451 40.0 37.0 40.0 33.0 40.0 40-41 38.02598607602053 40.0 37.0 40.0 33.0 40.0 42-43 37.969234564563294 40.0 37.0 40.0 33.0 40.0 44-45 37.8996178153889 40.0 37.0 40.0 33.0 40.0 46-47 37.85748632174159 40.0 37.0 40.0 33.0 40.0 48-49 37.834223465035 40.0 37.0 40.0 33.0 40.0 50-51 37.751691755423565 40.0 37.0 40.0 33.0 40.0 52-53 37.643306535159724 40.0 37.0 40.0 33.0 40.0 54-55 37.44329731665205 40.0 37.0 40.0 33.0 40.0 56-57 37.357310152402945 40.0 37.0 40.0 33.0 40.0 58-59 37.23656688630044 37.0 37.0 40.0 33.0 40.0 60-61 37.09134653603755 37.0 37.0 40.0 33.0 40.0 62-63 36.923059782507394 37.0 37.0 40.0 33.0 40.0 64-65 36.734602117222195 37.0 37.0 40.0 33.0 40.0 66-67 36.52646202474448 37.0 37.0 40.0 33.0 40.0 68-69 36.32107358883255 37.0 37.0 40.0 33.0 40.0 70-71 36.05262907295888 37.0 37.0 38.5 33.0 40.0 72-73 35.835161993410466 37.0 37.0 37.0 33.0 40.0 74-75 35.647168918871685 37.0 33.0 37.0 33.0 40.0 76-77 34.00624814662653 35.0 33.0 37.0 27.0 37.0 78-79 35.1168113983209 37.0 33.0 37.0 33.0 37.0 80-81 35.18039337857887 37.0 33.0 37.0 33.0 37.0 82-83 35.05976775452365 37.0 33.0 37.0 33.0 37.0 84-85 34.89613089306166 37.0 33.0 37.0 33.0 37.0 86-87 34.819326756576245 37.0 33.0 37.0 33.0 37.0 88-89 34.71978173297446 37.0 33.0 37.0 33.0 37.0 90-91 34.60952439024448 37.0 33.0 37.0 33.0 37.0 92-93 34.584210751372105 37.0 33.0 37.0 33.0 37.0 94-95 34.61283748928223 37.0 33.0 37.0 33.0 37.0 96-97 34.60758037107751 37.0 33.0 37.0 33.0 37.0 98-99 34.58436316488424 37.0 33.0 37.0 33.0 37.0 100 34.56784682299041 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 58.0 21 351.0 22 1223.0 23 3633.0 24 8329.0 25 16204.0 26 28507.0 27 44972.0 28 66058.0 29 92380.0 30 125152.0 31 166444.0 32 220044.0 33 295342.0 34 406294.0 35 593401.0 36 1046428.0 37 2544134.0 38 3004973.0 39 67906.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.499448168936695 20.279370703009985 14.688074299125303 23.53310682892802 2 14.633687130511683 21.01902016287749 41.52558241167754 22.82171029493329 3 17.834547796861578 26.416428429337735 30.67873789244167 25.070285881359013 4 12.388146414518179 18.321020348634462 38.82203966426774 30.46879357257961 5 13.333674613102692 37.91043330047656 35.50712513137267 13.248766955048072 6 29.899120825961838 37.892666739350915 18.859765052740364 13.348447381946881 7 26.540251142972288 32.82735744440547 23.02733708214272 17.605054330479526 8 24.7750216191572 36.42643892082756 21.005964493848317 17.79257496616692 9 25.834168495319254 16.734332824963904 20.936105212201003 36.49539346751583 10-11 24.25772108197652 26.66302385632286 28.849763736529294 20.22949132517133 12-13 25.248170817634797 24.23799409482894 28.839991715375863 21.6738433721604 14-15 22.34578138817695 25.61186181736596 26.443625679576844 25.598731114880245 16-17 21.83218792742285 28.79666585698614 27.100997853945774 22.27014836164524 18-19 21.88632887069952 27.8104303114155 28.868598012400366 21.434642805484618 20-21 22.69318707858593 26.920166191496786 28.845153942902197 21.541492787015095 22-23 22.409182997307695 26.919871943729735 28.69871631623643 21.972228742726138 24-25 22.171669114198238 27.12744372028159 28.76406996539968 21.936817200120487 26-27 22.059029784628304 27.23303928978537 28.744832733894558 21.963098191691767 28-29 21.94702411425435 27.157251505521717 28.824645322307855 22.071079057916073 30-31 22.205767659005314 27.083337276807264 28.716893389171776 21.994001675015646 32-33 22.04398638283676 27.260645890455887 28.671244397935208 22.024123328772145 34-35 22.174676646058405 27.339581013098286 28.680738016451734 21.80500432439158 36-37 22.203551729056542 27.220667341551042 28.504574857464142 22.071206071928273 38-39 22.11846125040533 27.299944303934996 28.597366677073843 21.984227768585832 40-41 22.31948240848169 27.20899901425985 28.47847389649798 21.99304468076048 42-43 22.24134886618669 27.2752586699838 28.31131216980018 22.172080294029335 44-45 22.27333698094274 27.439626976947544 28.10289552080975 22.184140521299963 46-47 22.456058034378675 27.373233449745697 27.746647590441746 22.42406092543388 48-49 22.37274870667607 27.498913592987346 27.731567244642157 22.39677045569443 50-51 22.31822963454577 27.65321339304902 27.653735502242938 22.37482147016227 52-53 22.50293994253125 27.577798012451062 27.593306793672586 22.325955251345107 54-55 22.50270071144759 27.533819153145423 27.52039973258181 22.44308040282517 56-57 22.483105742339635 27.664072423759904 27.459250289256826 22.39357154464364 58-59 22.370219843277646 27.707488267981002 27.581257470133735 22.34103441860762 60-61 22.52722853869055 27.740594318175148 27.461035115431088 22.271142027703213 62-63 22.44038671385772 27.8645650625988 27.42704394629455 22.268004277248927 64-65 22.427060046481998 27.753136457616257 27.411295161942604 22.408508333959134 66-67 22.493552401278503 27.736999819632587 27.289829991403202 22.479617787685715 68-69 22.40593393094243 27.70097125363468 27.378824785773077 22.514270029649815 70-71 22.435070469286874 27.547493236306963 27.413212622826233 22.60422367157993 72-73 22.497780464198215 27.5926376556072 27.274745766224562 22.634836113970024 74-75 22.368273080118435 27.70313422693988 27.305663795913187 22.622928897028498 76-77 22.51449403450517 27.583996386379738 27.2479721721878 22.653537406927292 78-79 22.47161158798269 27.614848887223925 27.142888379021162 22.770651145772224 80-81 22.502828377058222 27.671957696633413 27.185305617625545 22.63990830868282 82-83 22.513355783778678 27.623033057450787 27.260886392722313 22.602724766048226 84-85 22.54833364221059 27.660304247037455 27.210186252309292 22.58117585844266 86-87 22.488584404623587 27.643094417090147 27.29864157680576 22.5696796014805 88-89 22.468572746440387 27.628321694377018 27.25653567072255 22.64656988846005 90-91 22.510831965875852 27.66267626803711 27.267371966763456 22.55911979932358 92-93 22.55494103812862 27.599604888565477 27.29030839466433 22.555145678641573 94-95 22.372195931578556 27.64616739423442 27.35366865387785 22.627968020309176 96-97 22.508003411200594 27.738966784434304 27.393366342214698 22.359663462150404 98-99 23.645619710364173 29.636838031814623 27.534793922116336 19.18274833570487 100 22.545220245644995 30.64599219783434 21.427549869576254 25.381237686944413 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2286.0 1 1927.0 2 2255.5 3 3131.5 4 4172.0 5 6616.0 6 8665.0 7 10164.0 8 11247.0 9 11327.0 10 10593.5 11 9708.0 12 10665.5 13 14221.5 14 22514.0 15 34174.0 16 43856.5 17 49582.0 18 50887.5 19 48092.5 20 42963.5 21 37425.0 22 33764.0 23 34278.0 24 39162.0 25 47891.5 26 59650.0 27 73609.0 28 89296.0 29 107601.0 30 126456.0 31 145001.0 32 166061.0 33 187680.0 34 209446.0 35 230175.0 36 251093.0 37 270168.5 38 284954.5 39 298578.0 40 312117.0 41 324014.5 42 330546.0 43 336065.5 44 341722.5 45 347181.0 46 352880.0 47 357096.0 48 356934.5 49 352859.5 50 348697.0 51 339481.0 52 325464.0 53 308723.0 54 290034.0 55 271002.5 56 249531.5 57 225768.0 58 201253.0 59 174302.5 60 144967.5 61 117506.5 62 93672.0 63 72440.0 64 53721.5 65 39691.5 66 29926.0 67 22777.0 68 17371.0 69 12566.5 70 8961.0 71 6551.0 72 4531.5 73 2988.0 74 1950.0 75 1239.0 76 780.0 77 505.0 78 342.0 79 234.0 80 155.0 81 101.0 82 76.0 83 56.5 84 40.0 85 29.0 86 20.0 87 17.0 88 13.0 89 8.0 90 4.5 91 4.5 92 4.0 93 2.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 8.016638877560614E-5 7 0.0 8 0.0 9 0.0 10-11 0.00555438550802414 12-13 5.72617062682901E-6 14-15 0.00451794862456809 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 492.0 22-23 1019.0 24-25 2417.0 26-27 3127.0 28-29 5142.0 30-31 11540.0 32-33 14792.0 34-35 21165.0 36-37 30104.0 38-39 35633.0 40-41 40284.0 42-43 49877.0 44-45 61119.0 46-47 59554.0 48-49 52229.0 50-51 44103.0 52-53 42155.0 54-55 47362.0 56-57 50640.0 58-59 52775.0 60-61 53893.0 62-63 55291.0 64-65 57919.0 66-67 62162.0 68-69 59256.0 70-71 59141.0 72-73 56827.0 74-75 58733.0 76-77 57974.0 78-79 64004.0 80-81 65010.0 82-83 63920.0 84-85 64330.0 86-87 68270.0 88-89 74371.0 90-91 78944.0 92-93 83758.0 94-95 103124.0 96-97 298623.0 98-99 558466.0 100-101 6062163.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.1109862115218 #Duplication Level Percentage of deduplicated Percentage of total 1 89.6096220668432 76.2676330815077 2 7.280841029539882 12.393591209469022 3 1.78654753510134 4.561644678787152 4 0.6144346629886605 2.091805605180357 5 0.27868958914964964 1.1859772889705251 6 0.14723511251454613 0.7518795378646439 7 0.08508825030090954 0.5069361428686259 8 0.051025557222372495 0.347426839775085 9 0.030980256189042786 0.23730841416015303 >10 0.11250855631228367 1.42779328327317 >50 0.0025828811262420663 0.14640610262324666 >100 4.010882008115708E-4 0.05719207332405738 >500 4.341451115829565E-5 0.024405742196238853 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.726170626829011E-5 0.0 1.145234125365802E-5 0.0 3 0.0 5.726170626829011E-5 0.0 1.145234125365802E-5 0.0 4 0.0 9.161873002926416E-5 0.0 2.290468250731604E-5 0.0 5 0.0 1.030710712829222E-4 0.0 2.290468250731604E-5 0.0 6 0.0 1.030710712829222E-4 0.0 2.290468250731604E-5 1.145234125365802E-5 7 0.0 1.030710712829222E-4 0.0 2.290468250731604E-5 1.145234125365802E-5 8 0.0 1.3742809504389624E-4 0.0 2.290468250731604E-5 1.145234125365802E-5 9 0.0 1.8323746005852832E-4 0.0 3.435702376097406E-5 3.435702376097406E-5 10-11 0.0 1.9468980131218637E-4 0.0 4.008319438780307E-5 4.580936501463208E-5 12-13 0.0 2.004159719390154E-4 0.0 4.580936501463208E-5 5.726170626829011E-5 14-15 0.0 3.0348704322193755E-4 0.0 4.580936501463208E-5 9.161873002926416E-5 16-17 0.0 3.0921321384876657E-4 0.0 5.726170626829011E-5 1.030710712829222E-4 18-19 0.0 3.0921321384876657E-4 0.0 5.726170626829011E-5 1.087972419097512E-4 20-21 0.0 3.1493938447559554E-4 0.0 5.726170626829011E-5 1.2024958316340923E-4 22-23 5.72617062682901E-6 3.321178963560826E-4 0.0 8.016638877560614E-5 1.3170192441706722E-4 24-25 1.145234125365802E-5 3.779272613707147E-4 0.0 9.734490065609318E-5 1.3742809504389624E-4 26-27 1.145234125365802E-5 4.294627970121758E-4 0.0 1.3170192441706725E-4 1.4888043629755426E-4 28-29 1.145234125365802E-5 4.4664130889266287E-4 0.0 2.8630853134145053E-4 1.4888043629755426E-4 30-31 1.145234125365802E-5 4.6954599139997885E-4 0.0 8.131162290097195E-4 1.4888043629755426E-4 32-33 1.145234125365802E-5 4.809983326536369E-4 0.0 0.00219884952070234 1.717851188048703E-4 34-35 1.145234125365802E-5 5.66890892056072E-4 0.0 0.004036950291914452 1.717851188048703E-4 36-37 1.145234125365802E-5 6.642357927121652E-4 0.0 0.00723215350168504 1.775112894316993E-4 38-39 1.145234125365802E-5 6.985928164731393E-4 0.0 0.017510629776843114 1.8896363068535735E-4 40-41 1.145234125365802E-5 7.329498402341133E-4 0.0 0.028447615674086525 2.061421425658444E-4 42-43 1.145234125365802E-5 7.673068639950874E-4 0.0 0.03483229592300087 2.2904682507316043E-4 44-45 1.717851188048703E-5 8.245685702633776E-4 0.0 0.04310661247876879 2.2904682507316043E-4 46-47 3.435702376097406E-5 8.703779352780096E-4 0.0 0.05162715437149036 2.2904682507316043E-4 48-49 4.580936501463208E-5 8.761041059048387E-4 0.0 0.06063442076749239 2.4049916632681845E-4 50-51 4.580936501463208E-5 0.0010078060303219058 0.0 0.06943554502092858 2.4049916632681845E-4 52-53 4.580936501463208E-5 0.0010192583715755638 0.0 0.09406953105754698 2.5767767820730547E-4 54-55 4.580936501463208E-5 0.00104216305408288 0.0 0.1241949147252944 2.6913001946096346E-4 56-57 4.580936501463208E-5 0.001076520077843854 0.0 0.15752695394406607 2.748561900877925E-4 58-59 4.580936501463208E-5 0.001082246248470683 0.0 0.18970803286684512 2.748561900877925E-4 60-61 4.580936501463208E-5 0.001122329442858486 0.0 0.20227697739273479 2.748561900877925E-4 62-63 4.580936501463208E-5 0.001133781784112144 0.0 0.21820145790594628 2.8630853134145053E-4 64-65 4.580936501463208E-5 0.0012826622204096983 0.0 0.22396771172716307 2.8630853134145053E-4 66-67 5.72617062682901E-5 0.0012941145616633563 0.0 0.22826233969728482 2.8630853134145053E-4 68-69 6.871404752194812E-5 0.0013055669029170144 0.0 0.23249970596113834 2.8630853134145053E-4 70-71 6.871404752194812E-5 0.0013284715854243304 0.0 0.23631333559860646 2.977608725951085E-4 72-73 6.871404752194812E-5 0.0013399239266779885 0.0 0.2393310275189453 3.2066555510242456E-4 74-75 6.871404752194812E-5 0.0013800071210657914 0.0 0.24191925664227204 3.263917257292536E-4 76-77 6.871404752194812E-5 0.0014315426567072527 0.0 0.2442612604286451 3.321178963560826E-4 78-79 6.871404752194812E-5 0.0014544473392145687 0.0 0.24608790885860354 3.321178963560826E-4 80-81 8.016638877560614E-5 0.0014544473392145687 0.0 0.24662044272689865 3.4929640823656963E-4 82-83 8.016638877560614E-5 0.0014716258510950556 0.0 0.24703272701203033 3.6647492011705664E-4 84-85 8.016638877560614E-5 0.0014773520217218846 0.0 0.2472388691545962 3.6647492011705664E-4 86-87 8.016638877560614E-5 0.0015002567042292007 0.0 0.24731330937274495 3.6647492011705664E-4 88 8.016638877560614E-5 0.001557518410497491 0.0 0.24731330937274495 3.8937960262437274E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11670 0.0 52.629753 1 GTATCAA 21775 0.0 38.12833 1 TCAACGC 25960 0.0 31.260342 4 ATCAACG 26495 0.0 30.694704 3 CAACGCA 26730 0.0 30.36262 5 TATCAAC 27230 0.0 29.962166 2 AACGCAG 27300 0.0 29.664845 6 ACGCAGA 31295 0.0 25.919706 7 CGCAGAG 32295 0.0 25.090708 8 GTACATG 28035 0.0 22.653748 1 TACATGG 28540 0.0 21.810286 2 GCAGAGT 37225 0.0 21.710974 9 GTGGTAT 5565 0.0 21.055725 1 ACATGGG 28805 0.0 20.914013 3 GAGTACT 20995 0.0 20.635584 12-13 AGAGTAC 33605 0.0 19.259174 10-11 CAGAGTA 36575 0.0 19.208094 10-11 CATGGGG 21250 0.0 19.043306 4 TGGTATC 5715 0.0 18.978687 2 GTACTTT 23320 0.0 18.671944 14-15 >>END_MODULE