##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139522_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9484645 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60854581273205 33.0 33.0 33.0 33.0 33.0 2 32.664900162314986 33.0 33.0 33.0 33.0 33.0 3 33.34770020385581 33.0 33.0 33.0 33.0 37.0 4 36.4730690500277 37.0 37.0 37.0 37.0 37.0 5 36.500198056964706 37.0 37.0 37.0 37.0 37.0 6 36.47852681887409 37.0 37.0 37.0 37.0 37.0 7 36.470841344088264 37.0 37.0 37.0 37.0 37.0 8 36.45096954076826 37.0 37.0 37.0 37.0 37.0 9 36.48641725652357 37.0 37.0 37.0 37.0 37.0 10-11 36.434979643413115 37.0 37.0 37.0 37.0 37.0 12-13 36.655664550439155 37.0 37.0 37.0 37.0 38.5 14-15 38.36342340699098 40.0 37.0 40.0 37.0 40.0 16-17 38.305274050847444 40.0 37.0 40.0 37.0 40.0 18-19 38.3340278945601 40.0 37.0 40.0 37.0 40.0 20-21 38.33652938088848 40.0 37.0 40.0 37.0 40.0 22-23 38.34124344450204 40.0 37.0 40.0 37.0 40.0 24-25 38.30307730316915 40.0 37.0 40.0 37.0 40.0 26-27 38.18382376260726 40.0 37.0 40.0 37.0 40.0 28-29 38.11142232540536 40.0 37.0 40.0 35.0 40.0 30-31 37.96771880709882 40.0 37.0 40.0 33.0 40.0 32-33 37.95166271345978 40.0 37.0 40.0 33.0 40.0 34-35 37.90921819445188 40.0 37.0 40.0 33.0 40.0 36-37 37.82591408016676 40.0 37.0 40.0 33.0 40.0 38-39 37.76064467512617 40.0 37.0 40.0 33.0 40.0 40-41 37.76662179147269 40.0 37.0 40.0 33.0 40.0 42-43 37.69855965765926 40.0 37.0 40.0 33.0 40.0 44-45 37.62777339123104 40.0 37.0 40.0 33.0 40.0 46-47 37.59174648142499 40.0 37.0 40.0 33.0 40.0 48-49 37.55393464064626 40.0 37.0 40.0 33.0 40.0 50-51 37.44354541577977 40.0 37.0 40.0 33.0 40.0 52-53 37.34617554849391 40.0 37.0 40.0 33.0 40.0 54-55 37.20450148733254 38.5 37.0 40.0 33.0 40.0 56-57 37.08179634994707 37.0 37.0 40.0 33.0 40.0 58-59 36.92982322704911 37.0 37.0 40.0 33.0 40.0 60-61 36.803167428612326 37.0 37.0 40.0 33.0 40.0 62-63 36.639778876618294 37.0 37.0 40.0 33.0 40.0 64-65 36.46559378268802 37.0 37.0 40.0 33.0 40.0 66-67 36.241980324538815 37.0 37.0 40.0 33.0 40.0 68-69 36.012747407512904 37.0 37.0 38.5 33.0 40.0 70-71 35.77273112630574 37.0 33.0 37.0 33.0 40.0 72-73 35.56401356772682 37.0 33.0 37.0 33.0 40.0 74-75 35.14944277135792 37.0 33.0 37.0 30.0 40.0 76-77 33.85760943873301 35.0 33.0 37.0 27.0 37.0 78-79 34.92329958583997 37.0 33.0 37.0 33.0 37.0 80-81 34.97870224599016 37.0 33.0 37.0 33.0 37.0 82-83 34.83535948524267 37.0 33.0 37.0 33.0 37.0 84-85 34.71555086370118 37.0 33.0 37.0 33.0 37.0 86-87 34.60245189836623 37.0 33.0 37.0 33.0 37.0 88-89 34.46376669180573 37.0 33.0 37.0 33.0 37.0 90-91 34.46522150005319 37.0 33.0 37.0 33.0 37.0 92-93 34.394495927840424 37.0 33.0 37.0 33.0 37.0 94-95 34.37867480463075 37.0 33.0 37.0 33.0 37.0 96-97 34.38748164978411 37.0 33.0 37.0 33.0 37.0 98-99 34.387040154222426 37.0 33.0 37.0 33.0 37.0 100 34.37336729102577 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 7.0 19 23.0 20 99.0 21 394.0 22 1693.0 23 4639.0 24 10298.0 25 20216.0 26 34636.0 27 55230.0 28 82046.0 29 115389.0 30 155073.0 31 206372.0 32 274181.0 33 364235.0 34 495405.0 35 709814.0 36 1224171.0 37 2778545.0 38 2867555.0 39 84623.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.961920556857955 0.0 24.446766325993224 29.59131311714882 2 15.290029305261294 23.985251951970792 38.44783858541885 22.276880157349062 3 16.445939726789984 25.18275591759101 33.12798739436215 25.243316961256852 4 12.913451162378772 23.802746439112905 37.06900996294537 26.214792435562956 5 17.14788843396636 36.33451464646587 32.2717259890541 14.245870930513673 6 27.51563792880947 37.529236769544674 20.183292298530926 14.771833003114935 7 26.016980711136867 32.76853617278624 22.437225899042705 18.777257217034187 8 24.469199338635523 31.644647542540916 21.98220827498457 21.903944843838993 9 24.522901487713167 20.13885843023403 22.718538974238726 32.61970110781408 10-11 24.859873981476795 25.919517688142115 28.024492003643907 21.196116326737183 12-13 25.634663928762187 24.05587737460602 27.882232783875715 22.427225912756075 14-15 22.97843170560258 25.97124698360924 26.3729632278415 24.677358082946675 16-17 21.673320403662974 28.539639596421374 27.26465249885473 22.522387501060926 18-19 21.782992405092653 27.15698373529004 29.389297121821638 21.67072673779567 20-21 22.94856753037212 26.629656116085304 29.07381277293656 21.34796358060602 22-23 22.708663649241664 26.331034156222525 28.922737304282638 22.037564890253176 24-25 22.275480940961966 26.705858384640855 29.237243463917252 21.781417210479926 26-27 22.064081348646493 27.08681513979319 29.158139560405466 21.690963951154853 28-29 21.807859068188705 26.711356825382783 29.31308455599285 22.167699550435664 30-31 22.15055663311235 26.827209499403722 29.138585998416154 21.883647869067783 32-33 21.824095898870713 27.021848218755153 29.312406936531826 21.84164894584231 34-35 21.8580205685675 26.82406296773102 29.08086223276812 22.237054230933364 36-37 21.96639133481076 27.090253316335648 29.166074789445574 21.77728055940802 38-39 21.89203687126883 27.17561174728188 29.083660849740628 21.848690531708662 40-41 22.15175385698452 26.93714101849117 28.940316548875472 21.970788575648832 42-43 22.44168918948676 26.813340976475374 28.707149982489753 22.037819851548115 44-45 22.229522768330508 27.630307660863874 28.165548951533363 21.974620619272255 46-47 22.463514232468814 27.07420904942638 27.687753543213905 22.774523174890902 48-49 22.366951092751727 27.12480622586224 27.956382897696212 22.551859783689817 50-51 22.182900232283277 27.60260797083056 27.57290467506944 22.641587121816723 52-53 22.401672298826515 27.512341693480806 27.613022394940906 22.472963612751773 54-55 22.46280133837316 27.48087501816198 27.476276467611356 22.580047175853505 56-57 22.74937618024742 27.965846306063145 26.868654809670396 22.416122704019042 58-59 22.44415313692459 27.833333819927187 27.517308629936615 22.205204413211607 60-61 22.590897106461174 27.9623304147022 27.064502313963207 22.382270164873415 62-63 22.44802126571575 28.17215140633496 26.960379606167173 22.419447721782124 64-65 22.412179724499826 27.949895648969235 27.0142319574341 22.62369266909684 66-67 22.59756805034193 27.798055724456965 26.873382974264686 22.730993250936418 68-69 22.693381295369846 27.752197697964494 27.091242035502354 22.463178971163302 70-71 22.756352283434797 27.19334050645934 27.17595861326662 22.874348596839244 72-73 22.63484831019649 27.40629600855437 27.149839855477886 22.809015825771255 74-75 22.49013766880587 27.690318922971457 27.13805737878407 22.68148602943861 76-77 22.728733703126732 27.418861881471607 26.9496129819717 22.902791433429964 78-79 22.669748080717323 27.575148014070272 27.019203459221984 22.73590044599042 80-81 22.610481748023325 27.596691204103298 26.973828796826155 22.818998251047223 82-83 22.954927677842825 27.24118408717093 27.12433424250068 22.679553992485562 84-85 22.9860897260416 27.188177191566776 27.026749599098288 22.798983483293338 86-87 22.63834036708027 27.525158914093613 27.041701292815233 22.794799426010883 88-89 22.86973848704362 27.101169429906307 27.088442914190487 22.940649168859583 90-91 22.887117059151546 27.1859992278986 27.14252820314846 22.784355509801397 92-93 22.821687197720074 27.293428469926802 27.155618004219807 22.72926632813332 94-95 22.79839228398038 27.192809006544106 27.12079451887378 22.888004190601734 96-97 22.75809314385417 27.423417518403774 27.375684710903702 22.44280462683835 98-99 23.896299266908468 29.555687373490453 26.812186371391633 19.73582698820945 100 23.218442228483827 29.936072796974184 20.99166175839827 25.853823216143724 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2256.0 1 2140.5 2 3573.5 3 5349.0 4 7570.5 5 12974.5 6 16955.5 7 18771.5 8 19278.0 9 17957.5 10 15980.0 11 14241.0 12 15856.0 13 21566.5 14 35818.0 15 57908.0 16 77677.5 17 89739.0 18 91704.5 19 84405.5 20 72007.5 21 58537.5 22 48444.0 23 44656.5 24 47152.5 25 55823.5 26 70676.5 27 88824.5 28 104066.5 29 120570.0 30 136009.0 31 150287.0 32 171112.5 33 193500.5 34 217464.0 35 241420.0 36 270414.5 37 296781.0 38 302554.5 39 305866.0 40 320337.5 41 330959.5 42 334216.0 43 341011.0 44 352591.0 45 363345.5 46 367423.5 47 374216.5 48 395165.0 49 408240.5 50 408118.5 51 406403.0 52 396870.5 53 376767.5 54 350133.0 55 320901.0 56 292465.0 57 268717.0 58 245091.5 59 215083.5 60 178003.5 61 140633.5 62 106518.5 63 78193.5 64 57702.0 65 41593.0 66 30393.5 67 22626.0 68 16655.5 69 12237.5 70 8698.5 71 6150.0 72 4375.5 73 3074.0 74 2129.0 75 1482.0 76 989.0 77 613.0 78 405.0 79 282.5 80 208.5 81 143.0 82 101.5 83 74.5 84 55.5 85 38.0 86 26.5 87 19.0 88 13.0 89 9.0 90 6.5 91 5.0 92 3.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.108671436832902E-5 6 1.3706364339413862E-4 7 1.054335718416451E-5 8 1.1597692902580961E-4 9 2.214105008674547E-4 10-11 0.0034265910848534655 12-13 2.003237864991257E-4 14-15 0.002256278437411205 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 233.0 20-21 961.0 22-23 1909.0 24-25 3662.0 26-27 5561.0 28-29 10703.0 30-31 18708.0 32-33 25332.0 34-35 36586.0 36-37 47602.0 38-39 57129.0 40-41 61866.0 42-43 78530.0 44-45 95915.0 46-47 91317.0 48-49 79074.0 50-51 66619.0 52-53 65188.0 54-55 74578.0 56-57 79929.0 58-59 80993.0 60-61 80773.0 62-63 77597.0 64-65 80870.0 66-67 89019.0 68-69 77357.0 70-71 75698.0 72-73 72493.0 74-75 73114.0 76-77 73167.0 78-79 78312.0 80-81 80825.0 82-83 78150.0 84-85 80109.0 86-87 84095.0 88-89 91231.0 90-91 96762.0 92-93 104186.0 94-95 138616.0 96-97 460819.0 98-99 1636327.0 100-101 4872730.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.33139960600276 #Duplication Level Percentage of deduplicated Percentage of total 1 86.06008911926945 66.55147141810436 2 8.597059232213043 13.296452458454844 3 2.6636662156748687 6.179551096240872 4 1.1042828635388633 3.415829575935394 5 0.56912754459028 2.200571478874705 6 0.31451780677646013 1.4593261319420403 7 0.20173510807987957 1.0920320780239727 8 0.1208669164049008 0.7477446249322172 9 0.0852780329855414 0.5935202681776908 >10 0.276156114163699 3.2149762837834626 >50 0.004228137803113562 0.22192813967627328 >100 0.0022532223054531784 0.36388910279202874 >500 3.550495911163274E-4 0.1818305118708939 >1k 3.8463660326418616E-4 0.48087683119142366 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.054335718416451E-5 0.0 0.0 0.0 3 0.0 1.054335718416451E-5 0.0 0.0 0.0 4 0.0 1.054335718416451E-5 0.0 1.054335718416451E-5 0.0 5 0.0 1.054335718416451E-5 0.0 1.054335718416451E-5 0.0 6 1.054335718416451E-5 1.054335718416451E-5 0.0 2.108671436832902E-5 0.0 7 1.054335718416451E-5 1.054335718416451E-5 0.0 2.108671436832902E-5 0.0 8 1.054335718416451E-5 3.163007155249353E-5 0.0 3.163007155249353E-5 0.0 9 1.054335718416451E-5 4.217342873665804E-5 0.0 3.163007155249353E-5 0.0 10-11 1.054335718416451E-5 4.217342873665804E-5 0.0 6.853182169706931E-5 0.0 12-13 1.054335718416451E-5 4.217342873665804E-5 0.0 7.380350028915158E-5 0.0 14-15 1.5815035776246762E-5 6.853182169706931E-5 0.0 8.434685747331607E-5 0.0 16-17 2.6358392960411275E-5 8.434685747331607E-5 0.0 1.054335718416451E-4 0.0 18-19 3.163007155249353E-5 8.434685747331607E-5 0.0 1.423353219862209E-4 0.0 20-21 3.163007155249353E-5 8.434685747331607E-5 0.0 1.6869371494663215E-4 0.0 22-23 3.163007155249353E-5 8.434685747331607E-5 0.0 2.1613882227537246E-4 0.0 24-25 4.217342873665804E-5 1.0016189324956284E-4 0.0 2.47768893827866E-4 0.0 26-27 4.217342873665804E-5 1.1597692902580961E-4 0.0 3.479307870774288E-4 0.0 28-29 4.217342873665804E-5 1.2124860761789186E-4 0.0 6.484164668261174E-4 0.0 30-31 4.217342873665804E-5 1.3706364339413862E-4 0.0 0.0013126479694284816 0.0 32-33 4.217342873665804E-5 1.3706364339413862E-4 0.0 0.0024091571165815906 0.0 34-35 4.217342873665804E-5 1.5815035776246765E-4 0.0 0.0037745218719308945 0.0 36-37 4.217342873665804E-5 1.7923707213079668E-4 0.0 0.005935910094684619 0.0 38-39 4.217342873665804E-5 1.7923707213079668E-4 0.0 0.009320327750801428 0.0 40-41 5.271678592082255E-5 1.7923707213079668E-4 0.0 0.012941970943561937 0.0 42-43 5.271678592082255E-5 1.9505210790704344E-4 0.0 0.016147151527547948 0.0 44-45 5.271678592082255E-5 2.108671436832902E-4 0.0 0.01982678318482136 0.0 46-47 5.271678592082255E-5 2.108671436832902E-4 0.0 0.02363293512830475 0.0 48-49 5.271678592082255E-5 2.108671436832902E-4 0.0 0.02760778078673477 0.0 50-51 5.271678592082255E-5 2.4249721523578372E-4 0.0 0.031403389373033996 0.0 52-53 5.271678592082255E-5 2.4249721523578372E-4 0.0 0.03527807313821445 0.0 54-55 5.271678592082255E-5 2.4249721523578372E-4 0.0 0.03882064115209373 0.0 56-57 5.271678592082255E-5 2.5304057241994825E-4 0.0 0.04280603016770791 0.0 58-59 5.271678592082255E-5 2.5304057241994825E-4 0.0 0.04659636707541505 0.0 60-61 5.271678592082255E-5 2.5304057241994825E-4 0.0 0.05046577916200343 0.0 62-63 5.271678592082255E-5 2.5304057241994825E-4 0.0 0.05404524892602728 0.0 64-65 5.271678592082255E-5 2.635839296041128E-4 0.0 0.057888302619655246 0.0 66-67 5.271678592082255E-5 2.7412728678827725E-4 0.0 0.061910593385414006 0.0 68-69 5.271678592082255E-5 2.793989653803595E-4 0.0 0.06585908065088361 0.0 70-71 5.271678592082255E-5 2.846706439724418E-4 0.0 0.06943855041490746 0.0 72-73 5.271678592082255E-5 2.8994232256452404E-4 0.0 0.0726964477848143 0.0 74-75 5.271678592082255E-5 3.1102903693285304E-4 0.0 0.0752479402233821 0.0 76-77 5.271678592082255E-5 3.321157513011821E-4 0.0 0.0776887274115162 0.0 78-79 5.271678592082255E-5 3.373874298932643E-4 0.0 0.07927550266773295 0.0 80-81 5.271678592082255E-5 3.373874298932643E-4 0.0 0.07973413870524411 0.0 82-83 5.271678592082255E-5 3.4265910848534656E-4 0.0 0.08022440481430776 0.0 84-85 5.271678592082255E-5 3.637458228536756E-4 0.0 0.0804510869937673 0.0 86-87 5.271678592082255E-5 3.690175014457579E-4 0.0 0.0805407055298327 0.0 88 5.271678592082255E-5 4.1119093018241587E-4 0.0 0.0805407055298327 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20395 0.0 48.133247 1 CTTATAC 8305 0.0 41.4882 1 GTATCAA 35665 0.0 36.451008 1 TATACAC 10650 0.0 33.941063 3 ATCAACG 43190 0.0 29.73812 3 TATCAAC 45385 0.0 28.44891 2 TCAACGC 45500 0.0 28.200462 4 ACGCAGA 45755 0.0 28.063997 7 TTATACA 12420 0.0 27.912657 2 CAACGCA 46000 0.0 27.886803 5 AACGCAG 46585 0.0 27.600142 6 ACACATC 14005 0.0 24.332846 6 CGCAGAG 53590 0.0 23.95358 8 ATACACA 16410 0.0 22.980803 4 TACACAT 15535 0.0 22.88894 5 ACATCTC 15970 0.0 21.5777 8 GCAGAGT 60090 0.0 21.229477 9 GTGGTAT 9545 0.0 20.906084 1 ACATGGG 41680 0.0 20.743141 3 GAGTACT 33380 0.0 20.683973 12-13 >>END_MODULE