##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139521_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10567614 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50586622486401 33.0 33.0 33.0 33.0 33.0 2 32.54276935171932 33.0 33.0 33.0 33.0 33.0 3 32.56233024786863 33.0 33.0 33.0 33.0 33.0 4 36.4694736200622 37.0 37.0 37.0 37.0 37.0 5 36.493963916547294 37.0 37.0 37.0 37.0 37.0 6 36.483038082200956 37.0 37.0 37.0 37.0 37.0 7 36.46096091322033 37.0 37.0 37.0 37.0 37.0 8 36.45342108445672 37.0 37.0 37.0 37.0 37.0 9 36.49395814419414 37.0 37.0 37.0 37.0 37.0 10-11 36.41494399776525 37.0 37.0 37.0 37.0 37.0 12-13 36.41716517087017 37.0 37.0 37.0 37.0 37.0 14-15 38.39495859708729 40.0 37.0 40.0 37.0 40.0 16-17 38.34756800352473 40.0 37.0 40.0 37.0 40.0 18-19 38.346502058080475 40.0 37.0 40.0 37.0 40.0 20-21 38.343977506387574 40.0 37.0 40.0 37.0 40.0 22-23 38.34473539461007 40.0 37.0 40.0 37.0 40.0 24-25 38.33025653710615 40.0 37.0 40.0 37.0 40.0 26-27 38.22017694237017 40.0 37.0 40.0 37.0 40.0 28-29 38.15321209897796 40.0 37.0 40.0 35.0 40.0 30-31 38.01512220025651 40.0 37.0 40.0 33.0 40.0 32-33 38.01751605319812 40.0 37.0 40.0 33.0 40.0 34-35 37.972804140781406 40.0 37.0 40.0 33.0 40.0 36-37 37.896869797289185 40.0 37.0 40.0 33.0 40.0 38-39 37.84231328285722 40.0 37.0 40.0 33.0 40.0 40-41 37.8455486695689 40.0 37.0 40.0 33.0 40.0 42-43 37.777523791849276 40.0 37.0 40.0 33.0 40.0 44-45 37.711773646668945 40.0 37.0 40.0 33.0 40.0 46-47 37.674381923022864 40.0 37.0 40.0 33.0 40.0 48-49 37.645786953642784 40.0 37.0 40.0 33.0 40.0 50-51 37.5592975913611 40.0 37.0 40.0 33.0 40.0 52-53 37.453748116051 40.0 37.0 40.0 33.0 40.0 54-55 37.2949850786098 40.0 37.0 40.0 33.0 40.0 56-57 37.188461682918266 38.5 37.0 40.0 33.0 40.0 58-59 37.023191401707024 37.0 37.0 40.0 33.0 40.0 60-61 36.9036221881005 37.0 37.0 40.0 33.0 40.0 62-63 36.735231055384105 37.0 37.0 40.0 33.0 40.0 64-65 36.55666395115662 37.0 37.0 40.0 33.0 40.0 66-67 36.32711450134263 37.0 37.0 40.0 33.0 40.0 68-69 36.10135151641519 37.0 37.0 40.0 33.0 40.0 70-71 35.8503787194949 37.0 35.0 37.0 33.0 40.0 72-73 35.643259412404504 37.0 33.0 37.0 33.0 40.0 74-75 35.42619241890485 37.0 33.0 37.0 33.0 40.0 76-77 33.7127031305958 35.0 33.0 37.0 27.0 37.0 78-79 34.93282552438209 37.0 33.0 37.0 33.0 37.0 80-81 35.01253569983621 37.0 33.0 37.0 33.0 37.0 82-83 34.86297997225702 37.0 33.0 37.0 33.0 37.0 84-85 34.72876250308708 37.0 33.0 37.0 33.0 37.0 86-87 34.612812858192015 37.0 33.0 37.0 33.0 37.0 88-89 34.44551340973521 37.0 33.0 37.0 30.0 37.0 90-91 34.45066618225335 37.0 33.0 37.0 33.0 37.0 92-93 34.38251786475738 37.0 33.0 37.0 33.0 37.0 94-95 34.35752581614297 37.0 33.0 37.0 33.0 37.0 96-97 34.36202525203057 37.0 33.0 37.0 33.0 37.0 98-99 34.36186375984144 37.0 33.0 37.0 33.0 37.0 100 34.37223890647578 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 0.0 19 21.0 20 93.0 21 448.0 22 1703.0 23 4929.0 24 11581.0 25 22436.0 26 38898.0 27 61523.0 28 90216.0 29 126506.0 30 170765.0 31 226786.0 32 300418.0 33 400285.0 34 548440.0 35 792147.0 36 1365409.0 37 3092186.0 38 3246015.0 39 66806.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.535392946790076 20.323963384733773 14.496545767095581 23.644097901380576 2 14.619127837182546 21.10668500950167 41.45024600633596 22.82394114697982 3 17.880346500165505 26.472730741300733 30.662503380611746 24.984419377922016 4 12.4729953232584 18.33703426336352 38.84317689877772 30.34679351460036 5 13.402911953445686 37.87041237501673 35.46041708185027 13.266258589687322 6 29.770801230478533 37.95348535277087 18.887786777617162 13.38792663913344 7 26.463286793026313 32.83178208439483 23.068925492547322 17.63600563003153 8 24.63581656180856 36.42715375485895 21.110933839937758 17.826095843394736 9 25.76155088192575 16.77591713473989 21.02002599830255 36.442505985031815 10-11 24.22297864769862 26.646405945920627 28.8457918785833 20.284823527797453 12-13 25.183359761565832 24.25521260099135 28.862814147338668 21.69861349010415 14-15 22.29888124822123 25.578916015664277 26.48866095426411 25.633541781850383 16-17 21.807581162597348 28.726172246639592 27.13991540569139 22.326331185071673 18-19 21.843544815319714 27.858161738307246 28.902011371724974 21.39628207464807 20-21 22.720837153874797 26.915165928645067 28.79590617439403 21.568090743086106 22-23 22.466594763286913 26.93332684742324 28.614797461920794 21.985280927369054 24-25 22.222838010232756 27.116330216872807 28.67134849607451 21.989483276819925 26-27 22.114764622171222 27.24039509427138 28.670845985382797 21.973994298174603 28-29 22.05324647184402 27.20306241215871 28.72071355245257 22.022977563544696 30-31 22.333392662927874 27.112441273774007 28.520074219663755 22.034091843634364 32-33 22.176565224111226 27.26044150467491 28.529133262927726 22.03386000828614 34-35 22.32526627181226 27.305947613005905 28.504882953781603 21.863903161400234 36-37 22.257269942055625 27.228568611002068 28.36239231040088 22.15176913654143 38-39 22.142025555458503 27.32880008519284 28.48416334530261 22.04501101404605 40-41 22.358793870090192 27.205516082445136 28.391592055237737 22.044097992226934 42-43 22.298404432614692 27.297056678147534 28.18042519479641 22.224113694441357 44-45 22.328831926680213 27.440517404136333 27.99858508331326 22.2320655858702 46-47 22.50133572850476 27.406935760468233 27.633201705972077 22.45852680505493 48-49 22.422463761864208 27.507232837340347 27.614094203747 22.456209197048445 50-51 22.404211869523742 27.649517231651338 27.52178352246063 22.424487376364294 52-53 22.573133762108675 27.56912646000238 27.44529703503527 22.412442742853678 54-55 22.528875462244333 27.497528470540093 27.44952952559421 22.52406654162136 56-57 22.56260387473382 27.638094044395846 27.358080711292597 22.44122136957774 58-59 22.44086831589849 27.698351552044652 27.444875448742245 22.415904683314608 60-61 22.583434927868986 27.726635924284604 27.33608031458393 22.35384883326248 62-63 22.527599620083556 27.830362333803933 27.25610654834871 22.385931497763803 64-65 22.545744567843098 27.69140609264665 27.272053777548443 22.49079556196181 66-67 22.6289436801358 27.6483959305517 27.162067466476238 22.560592922836264 68-69 22.512489983317202 27.64478075667936 27.263812438200397 22.57891682180304 70-71 22.552485251289724 27.462086061020546 27.320815184650186 22.664613503039543 72-73 22.619610507004133 27.512320751386653 27.236300618845643 22.63176812276357 74-75 22.501322145884274 27.660714836255494 27.19266549137797 22.645297526482263 76-77 22.61878113237071 27.546970217242006 27.16827997183417 22.66596867855311 78-79 22.552608010985608 27.52280903418141 27.147008376865784 22.7775745779672 80-81 22.55985218179093 27.591184849252574 27.159213855790586 22.68974911316591 82-83 22.60173950835112 27.578432541650184 27.228445978001865 22.591381971996835 84-85 22.67415802558719 27.549261737396325 27.139964183720167 22.63661605329632 86-87 22.561696326670322 27.5346424804649 27.237739402361882 22.665921790502896 88-89 22.61184817923678 27.536719357364316 27.193416343772387 22.658016119626517 90-91 22.622121534484986 27.628392587357176 27.15302907382601 22.59645680433183 92-93 22.655555842139776 27.548643248610095 27.203140184904008 22.59266072434612 94-95 22.512512108395956 27.550914807624473 27.27116828663726 22.66540479734231 96-97 22.606518961926593 27.676782219105995 27.28660276022606 22.430096058741356 98-99 23.762077744540992 29.546585769736723 27.474852329832373 19.21648415588991 100 22.630691311129038 30.61740979484885 21.27576443808114 25.476134455940976 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2401.0 1 2091.5 2 2698.5 3 3819.0 4 5086.0 5 8207.0 6 10831.0 7 12539.0 8 13537.5 9 13198.0 10 12081.0 11 11062.5 12 12308.0 13 16495.5 14 26342.0 15 40467.0 16 52365.5 17 59666.5 18 61743.0 19 58545.5 20 52115.0 21 45201.5 22 40529.0 23 40558.5 24 45771.0 25 56133.0 26 70510.0 27 87782.0 28 107701.0 29 131488.5 30 155976.0 31 179467.0 32 205716.0 33 232099.5 34 257523.5 35 281062.0 36 304641.0 37 326441.0 38 343895.0 39 360803.0 40 377323.0 41 390780.0 42 397708.0 43 405829.5 44 415267.0 45 422993.5 46 427295.0 47 426888.5 48 430384.5 49 430353.5 50 422709.0 51 411891.0 52 398251.0 53 378228.5 54 352793.5 55 327151.0 56 300742.5 57 272638.0 58 242886.0 59 210861.0 60 177038.0 61 144923.0 62 115198.5 63 88996.5 64 66355.5 65 48969.5 66 36962.0 67 28351.5 68 22064.0 69 16396.0 70 11796.5 71 8704.0 72 6110.0 73 3990.0 74 2629.5 75 1697.5 76 1114.0 77 692.5 78 453.0 79 334.0 80 249.0 81 173.0 82 116.5 83 78.5 84 54.0 85 38.0 86 25.5 87 18.0 88 11.0 89 5.0 90 3.0 91 2.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.7033173240430622E-4 7 0.0 8 0.0 9 9.462874022461456E-6 10-11 0.0034918005142882775 12-13 9.462874022461456E-6 14-15 0.0024272271867613634 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 156.0 20-21 662.0 22-23 1413.0 24-25 2962.0 26-27 3921.0 28-29 6776.0 30-31 14345.0 32-33 18240.0 34-35 25707.0 36-37 35765.0 38-39 44093.0 40-41 48861.0 42-43 60770.0 44-45 74050.0 46-47 71427.0 48-49 63108.0 50-51 55496.0 52-53 54337.0 54-55 60047.0 56-57 64740.0 58-59 65629.0 60-61 66830.0 62-63 66586.0 64-65 71441.0 66-67 76322.0 68-69 74366.0 70-71 73707.0 72-73 71143.0 74-75 74212.0 76-77 73167.0 78-79 80090.0 80-81 82330.0 82-83 81275.0 84-85 82236.0 86-87 88598.0 88-89 94622.0 90-91 101593.0 92-93 108883.0 94-95 133542.0 96-97 381560.0 98-99 674577.0 100-101 7238029.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.860815893851 #Duplication Level Percentage of deduplicated Percentage of total 1 88.2547638459531 73.12861738794817 2 8.012187349773818 13.277927617933008 3 2.0157730332817416 5.01085794583644 4 0.7813617713979575 2.5897709554519786 5 0.37005188175492654 1.5331400422634043 6 0.19212310735523516 0.9551686456510028 7 0.10974823480827461 0.6365679795386502 8 0.06968933987499443 0.46196124489167384 9 0.045958661610901744 0.3427354978621855 >10 0.14506989650118748 1.8220719924513387 >50 0.0025023155900707104 0.13810278223326236 >100 7.503068797502965E-4 0.09174895167140537 >500 2.025521802281392E-5 0.01132895626747783 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.462874022461456E-6 2 0.0 1.8925748044922913E-5 0.0 0.0 9.462874022461456E-6 3 0.0 1.8925748044922913E-5 0.0 0.0 9.462874022461456E-6 4 0.0 7.570299217969165E-5 0.0 9.462874022461456E-6 9.462874022461456E-6 5 0.0 7.570299217969165E-5 0.0 9.462874022461456E-6 9.462874022461456E-6 6 0.0 7.570299217969165E-5 0.0 9.462874022461456E-6 9.462874022461456E-6 7 0.0 7.570299217969165E-5 0.0 3.7851496089845826E-5 9.462874022461456E-6 8 0.0 1.0409161424707602E-4 0.0 3.7851496089845826E-5 9.462874022461456E-6 9 0.0 1.7979460642676768E-4 0.0 5.677724413476874E-5 9.462874022461456E-6 10-11 4.731437011230728E-6 1.7979460642676768E-4 0.0 1.0882305125830675E-4 9.462874022461456E-6 12-13 9.462874022461456E-6 1.8452604343799838E-4 0.0 1.3248023631446038E-4 3.7851496089845826E-5 14-15 9.462874022461456E-6 3.170062797524588E-4 0.0 1.3248023631446038E-4 4.7314370112307285E-5 16-17 2.838862206738437E-5 3.501263388310739E-4 0.0 1.3248023631446038E-4 5.677724413476874E-5 18-19 3.7851496089845826E-5 3.6432064986476607E-4 0.0 1.372116733256911E-4 5.677724413476874E-5 20-21 3.7851496089845826E-5 3.879778349209197E-4 0.0 1.4194311033692184E-4 7.570299217969165E-5 22-23 5.204580712353801E-5 4.3056076802199623E-4 0.0 1.656002953930755E-4 7.570299217969165E-5 24-25 7.570299217969165E-5 4.7314370112307283E-4 0.0 1.7033173240430622E-4 7.570299217969165E-5 26-27 7.570299217969165E-5 4.826065751455343E-4 0.0 1.9398891746045984E-4 9.462874022461456E-5 28-29 7.570299217969165E-5 4.87338012156765E-4 0.0 2.6496047262892077E-4 9.462874022461456E-5 30-31 9.462874022461456E-5 6.387439965161482E-4 0.0 6.292811224936868E-4 9.936017723584529E-5 32-33 9.462874022461456E-5 6.482068705386098E-4 0.0 0.0014714769104927565 1.0409161424707602E-4 34-35 9.462874022461456E-5 7.99612854897993E-4 0.0 0.00246981011986244 1.3248023631446038E-4 36-37 1.1355448826953748E-4 9.084359061562997E-4 0.0 0.004102155888737041 1.3248023631446038E-4 38-39 1.1355448826953748E-4 9.510188392573764E-4 0.0 0.006723371992958865 1.4194311033692184E-4 40-41 1.1355448826953748E-4 0.0011355448826953747 0.0 0.009566965636708533 1.4194311033692184E-4 42-43 1.1355448826953748E-4 0.0012112478748750664 0.0 0.012325393414256047 1.5613742137061403E-4 44-45 1.1355448826953748E-4 0.0013153394891221425 0.0 0.015433947530634635 1.7033173240430622E-4 46-47 1.1355448826953748E-4 0.0013863110442906032 0.0 0.018807462119642147 1.7506316941553695E-4 48-49 1.2301736229199892E-4 0.0014383568514141415 0.0 0.02237023418909888 1.9872035447169057E-4 50-51 1.4667454734815257E-4 0.0017127801980655237 0.0 0.025847840392353466 1.9872035447169057E-4 52-53 1.5613742137061403E-4 0.001741168820132908 0.0 0.029273400788484515 2.0818322849415203E-4 54-55 1.7506316941553692E-4 0.0017695574422002922 0.0 0.03282670998391879 2.176461025166135E-4 56-57 1.8925748044922911E-4 0.0017979460642676766 0.0 0.03646518504555522 2.365718505615364E-4 58-59 2.0818322849415203E-4 0.0017979460642676766 0.0 0.04033550052074196 2.6022903561769006E-4 60-61 2.176461025166135E-4 0.0018405289973687533 0.0 0.04420108455891746 2.6496047262892077E-4 62-63 2.2237753952784422E-4 0.0018689176194361377 0.0 0.0479483826718122 2.6496047262892077E-4 64-65 2.2710897653907495E-4 0.002105489469997674 0.0 0.051799772398954017 2.6496047262892077E-4 66-67 2.3184041355030568E-4 0.0021622667141324428 0.0 0.05584988248056751 2.6496047262892077E-4 68-69 2.3657185056153641E-4 0.0022143125212559806 0.0 0.05988106681413609 2.6969190964015147E-4 70-71 2.4130328757276714E-4 0.0022521640173458262 0.0 0.06368987360817682 2.744233466513822E-4 72-73 2.4603472458399785E-4 0.0022758212024019805 0.0 0.06667067892525219 3.028119687187666E-4 74-75 2.4603472458399785E-4 0.002346792757570441 0.0 0.06943383813981094 3.1227484274122806E-4 76-77 2.4603472458399785E-4 0.002436690060783825 0.0 0.07196042550380814 3.1227484274122806E-4 78-79 2.4603472458399785E-4 0.002507661615952286 0.0 0.07364954851681751 3.1227484274122806E-4 80-81 2.4603472458399785E-4 0.0025218559269859784 0.0 0.07418893233609783 3.170062797524588E-4 82-83 2.4603472458399785E-4 0.0025455131120421318 0.0 0.07461476166710859 3.217377167636895E-4 84-85 2.4603472458399785E-4 0.002592827482154439 0.0 0.07480875058456904 3.217377167636895E-4 86-87 2.4603472458399785E-4 0.002611753230199362 0.0 0.07491284219881611 3.217377167636895E-4 88 2.4603472458399785E-4 0.002696919096401515 0.0 0.07491757363582735 3.31200590786151E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14850 0.0 50.58813 1 GTATCAA 26050 0.0 36.565037 1 TCAACGC 31030 0.0 30.164324 4 ATCAACG 31525 0.0 29.704481 3 CAACGCA 31825 0.0 29.398262 5 TATCAAC 32585 0.0 28.92497 2 AACGCAG 32780 0.0 28.62136 6 ACGCAGA 37445 0.0 25.009192 7 CGCAGAG 38580 0.0 24.273552 8 GTACATG 34645 0.0 21.759048 1 TACATGG 34520 0.0 21.384459 2 GCAGAGT 44575 0.0 21.00964 9 ACATGGG 35440 0.0 20.399986 3 GAGTACT 24700 0.0 20.25058 12-13 CTTATAC 5995 0.0 19.362143 1 CAGAGTA 43265 0.0 19.188772 10-11 AGAGTAC 40160 0.0 18.826523 10-11 GTGGTAT 6865 0.0 18.744873 1 CATGGGG 24950 0.0 18.43514 4 GTACTTT 27345 0.0 18.300228 14-15 >>END_MODULE