##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139520_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13015852 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5369517877124 33.0 33.0 33.0 33.0 33.0 2 32.573012354473605 33.0 33.0 33.0 33.0 33.0 3 32.597211769156566 33.0 33.0 33.0 33.0 33.0 4 36.5115666650174 37.0 37.0 37.0 37.0 37.0 5 36.536960162116166 37.0 37.0 37.0 37.0 37.0 6 36.522864580820375 37.0 37.0 37.0 37.0 37.0 7 36.50271361413759 37.0 37.0 37.0 37.0 37.0 8 36.49354464079647 37.0 37.0 37.0 37.0 37.0 9 36.52916290074595 37.0 37.0 37.0 37.0 37.0 10-11 36.45484314050283 37.0 37.0 37.0 37.0 37.0 12-13 36.45800797366165 37.0 37.0 37.0 37.0 37.0 14-15 38.4731195468418 40.0 37.0 40.0 37.0 40.0 16-17 38.428924168775126 40.0 37.0 40.0 37.0 40.0 18-19 38.43348080479096 40.0 37.0 40.0 37.0 40.0 20-21 38.43131753779713 40.0 37.0 40.0 37.0 40.0 22-23 38.43416986257131 40.0 37.0 40.0 37.0 40.0 24-25 38.42286021744516 40.0 37.0 40.0 37.0 40.0 26-27 38.31673107345446 40.0 37.0 40.0 37.0 40.0 28-29 38.251947027271825 40.0 37.0 40.0 37.0 40.0 30-31 38.11296785650268 40.0 37.0 40.0 37.0 40.0 32-33 38.121721940181374 40.0 37.0 40.0 37.0 40.0 34-35 38.08522870658295 40.0 37.0 40.0 33.0 40.0 36-37 38.004344727500296 40.0 37.0 40.0 33.0 40.0 38-39 37.95263340505093 40.0 37.0 40.0 33.0 40.0 40-41 37.9640867134203 40.0 37.0 40.0 33.0 40.0 42-43 37.90143918124606 40.0 37.0 40.0 33.0 40.0 44-45 37.84439439514995 40.0 37.0 40.0 33.0 40.0 46-47 37.81010429030016 40.0 37.0 40.0 33.0 40.0 48-49 37.785514824510585 40.0 37.0 40.0 33.0 40.0 50-51 37.70600610695498 40.0 37.0 40.0 33.0 40.0 52-53 37.605147834625726 40.0 37.0 40.0 33.0 40.0 54-55 37.45959551464502 40.0 37.0 40.0 33.0 40.0 56-57 37.35863783747568 40.0 37.0 40.0 33.0 40.0 58-59 37.19707791121998 37.0 37.0 40.0 33.0 40.0 60-61 37.08328503485477 37.0 37.0 40.0 33.0 40.0 62-63 36.91805324854577 37.0 37.0 40.0 33.0 40.0 64-65 36.74313033509231 37.0 37.0 40.0 33.0 40.0 66-67 36.51837003168228 37.0 37.0 40.0 33.0 40.0 68-69 36.292492031504246 37.0 37.0 40.0 33.0 40.0 70-71 36.04109471792994 37.0 37.0 38.5 33.0 40.0 72-73 35.83398469281668 37.0 35.0 37.0 33.0 40.0 74-75 35.613637575985145 37.0 33.0 37.0 33.0 40.0 76-77 33.91653431678651 35.0 33.0 37.0 27.0 37.0 78-79 35.10068100438065 37.0 33.0 37.0 33.0 37.0 80-81 35.164226887210674 37.0 33.0 37.0 33.0 37.0 82-83 35.011099340052546 37.0 33.0 37.0 33.0 37.0 84-85 34.879406091321755 37.0 33.0 37.0 33.0 37.0 86-87 34.7651080135558 37.0 33.0 37.0 33.0 37.0 88-89 34.60123063607652 37.0 33.0 37.0 33.0 37.0 90-91 34.60513441604084 37.0 33.0 37.0 33.0 37.0 92-93 34.53608808500178 37.0 33.0 37.0 33.0 37.0 94-95 34.511159670361266 37.0 33.0 37.0 33.0 37.0 96-97 34.51457200693824 37.0 33.0 37.0 33.0 37.0 98-99 34.49794464934541 37.0 33.0 37.0 33.0 37.0 100 34.51512882906228 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 3.0 19 22.0 20 85.0 21 469.0 22 1726.0 23 4924.0 24 11799.0 25 23593.0 26 40954.0 27 66159.0 28 98618.0 29 139519.0 30 190375.0 31 256321.0 32 341393.0 33 460705.0 34 634439.0 35 920313.0 36 1588009.0 37 3731165.0 38 4397074.0 39 108186.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.594680087020045 20.320844152192265 14.474726664070857 23.609749096716833 2 14.51521575383617 21.149771832070616 41.628738556646155 22.70627385744706 3 17.769555154745152 26.592312205148 30.725164975754183 24.912967664352667 4 12.33641869929068 18.4511624748038 39.11684767159307 30.095571154312452 5 13.218727440969674 37.983598768639965 35.63030679820268 13.167366992187679 6 29.550524246244763 38.15693659182703 19.05530419496874 13.237234966959463 7 26.380094057615285 32.91416497360296 23.209337352637384 17.496403616144377 8 24.53402205249414 36.53056288593324 21.230550255181143 17.70486480639147 9 25.776024940666574 16.822226990766872 21.092681531157666 36.30906653740888 10-11 24.083365580459997 26.779443060845402 28.9996025084647 20.1375888502299 12-13 25.13691482632998 24.378758279090164 28.964690927732523 21.519635966847336 14-15 22.226101776278302 25.732743996248175 26.65092034683495 25.390233880638576 16-17 21.697388691881255 28.86427642231949 27.274737758235112 22.16359712756414 18-19 21.734147714648262 28.019629448767546 29.027608027503693 21.218614809080496 20-21 22.62327399049395 27.10665184638714 28.927757591161125 21.342316571957788 22-23 22.3415700013047 27.100739898602217 28.749971378047505 21.807718722045575 24-25 22.090211072843594 27.275946352517455 28.799524066650957 21.834318507987994 26-27 22.001136413083003 27.46432199528983 28.74215246878093 21.792389122846238 28-29 21.916151531334737 27.438422287026665 28.79991167295643 21.845514508682164 30-31 22.308486156295654 27.31739488692866 28.64676633805847 21.727352618717223 32-33 21.93345866670718 27.55142085832874 28.618511485863674 21.896608989100407 34-35 22.146650733123824 27.541398537817663 28.61670400414507 21.695246724913442 36-37 22.122277174078448 27.488782448610174 28.504616608547533 21.884323768763846 38-39 21.98146654554275 27.5068428208453 28.65356545668945 21.8581251769225 40-41 22.2210771691181 27.371004840872963 28.503233089198176 21.904684900810754 42-43 22.144917110808045 27.47525959416668 28.29025203314859 22.08957126187669 44-45 22.199998151080013 27.62282492517131 28.09812829385988 22.079048629888792 46-47 22.32744653052418 27.597251167887922 27.758035326578867 22.31726697500903 48-49 22.251078832045064 27.671284629578878 27.776487443388092 22.301149094987963 50-51 22.259594430018847 27.80105889186068 27.6740277836011 22.265318894519368 52-53 22.39983337733637 27.738318174367855 27.593852431797742 22.26799601649803 54-55 22.40710018547995 27.674165911450565 27.559036024641788 22.3596978784277 56-57 22.407117386890583 27.81854216946471 27.469797279045803 22.304543164598904 58-59 22.31177078158209 27.84381991576808 27.581638462931508 22.262770839718325 60-61 22.45832494607196 27.89685056387458 27.43019239714185 22.214632092911607 62-63 22.356962156644947 27.98893463093235 27.416894478344155 22.237208734078546 64-65 22.373337245884727 27.85264639987294 27.39594673538791 22.378069618854425 66-67 22.43476440739594 27.842055688565253 27.30065502631003 22.42252487772878 68-69 22.380300892069087 27.84736026014436 27.398848108767375 22.37349073901917 70-71 22.376692356111487 27.647593431534574 27.45696636182296 22.518747850530982 72-73 22.450478030384 27.706392722473304 27.355059843976527 22.488069403166165 74-75 22.374832418423072 27.791669717261485 27.300986569069085 22.532511295246355 76-77 22.423838736052 27.73096639222019 27.310439593890774 22.53475527783703 78-79 22.42295219518465 27.713347695158298 27.270632470995764 22.59306763866129 80-81 22.415569199498382 27.824073501733903 27.24259716629267 22.51776013247504 82-83 22.46287465065778 27.748850789485914 27.339380792614897 22.448893767241408 84-85 22.51474771377622 27.75116584755758 27.25091083305363 22.48317560561257 86-87 22.408267047553377 27.758737125656623 27.32784324794323 22.50515257884677 88-89 22.46374584109955 27.6903958606731 27.323525874240516 22.52233242398683 90-91 22.459177409275206 27.786909513838133 27.288917001942448 22.46499607494422 92-93 22.536371713936525 27.714821623684927 27.308947002513506 22.439859659865046 94-95 22.356300449704175 27.74011092033114 27.392359456128844 22.51122917383584 96-97 22.484133521965056 27.856688782914567 27.388086642782376 22.271091052338 98-99 23.597668724195678 29.72424605990599 27.631424752943833 19.046660462954502 100 22.46987537201092 30.758946161133675 21.44277186763686 25.32840659921854 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2912.0 1 2647.5 2 3549.5 3 4961.0 4 6544.5 5 10368.0 6 13487.0 7 15350.5 8 16496.0 9 16321.0 10 15290.5 11 14211.5 12 15585.5 13 20761.0 14 33172.5 15 50666.5 16 65535.5 17 75084.5 18 77848.5 19 73656.5 20 65749.0 21 57168.0 22 51208.0 23 51162.0 24 57632.0 25 71014.0 26 89772.5 27 111787.0 28 137701.0 29 167116.0 30 198171.5 31 229921.0 32 265313.0 33 300709.5 34 334906.0 35 367665.0 36 400355.0 37 429262.0 38 450136.5 39 470031.5 40 489339.0 41 503133.5 42 510738.0 43 519531.5 44 527882.5 45 535060.5 46 540881.0 47 541965.0 48 538249.0 49 531349.0 50 522055.5 51 505724.0 52 483540.0 53 455723.0 54 424785.0 55 394194.0 56 361560.5 57 325513.0 58 287919.0 59 249786.0 60 209155.5 61 169439.5 62 134218.0 63 103513.5 64 77145.0 65 57409.5 66 43736.0 67 33595.0 68 25773.5 69 19044.5 70 13670.5 71 9684.5 72 6656.0 73 4565.5 74 3111.5 75 2025.5 76 1298.5 77 818.5 78 517.0 79 328.0 80 206.5 81 142.5 82 119.5 83 103.0 84 74.0 85 48.0 86 36.0 87 25.5 88 20.0 89 18.0 90 14.0 91 11.0 92 8.0 93 5.0 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.6902466315689513E-4 7 0.0 8 0.0 9 7.682939234404326E-6 10-11 0.003691652302131278 12-13 3.457322655481946E-5 14-15 0.002489272311947001 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 197.0 20-21 810.0 22-23 1683.0 24-25 4286.0 26-27 5324.0 28-29 9093.0 30-31 20875.0 32-33 26522.0 34-35 37800.0 36-37 55005.0 38-39 66931.0 40-41 72250.0 42-43 87385.0 44-45 106037.0 46-47 102305.0 48-49 91819.0 50-51 81468.0 52-53 79919.0 54-55 87344.0 56-57 92570.0 58-59 92158.0 60-61 93191.0 62-63 91840.0 64-65 97057.0 66-67 103954.0 68-69 100600.0 70-71 100322.0 72-73 96374.0 74-75 99497.0 76-77 98961.0 78-79 105424.0 80-81 108412.0 82-83 105903.0 84-85 106842.0 86-87 113498.0 88-89 120386.0 90-91 127853.0 92-93 134546.0 94-95 163427.0 96-97 463403.0 98-99 802889.0 100-101 8659692.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.07725517194538 #Duplication Level Percentage of deduplicated Percentage of total 1 88.97604661146433 74.80861775142992 2 7.744283953568705 13.022362761763961 3 1.8407040121778067 4.642840227836914 4 0.648929279538993 2.182407704973864 5 0.3070651442193156 1.2908597242468802 6 0.15577949193128152 0.7858507256197418 7 0.09663807625142824 0.5687544937422074 8 0.06453668498173529 0.4340853864928651 9 0.0364203584045012 0.2755911390326058 >10 0.12510830405069664 1.643008756046068 >50 0.0034407688272045144 0.19351448871217655 >100 0.0010156672689921847 0.13679383844641513 >500 3.164731507854447E-5 0.015313001656357534 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.682939234404326E-6 0.0 2.3048817703212975E-5 0.0 3 0.0 1.536587846880865E-5 0.0 3.07317569376173E-5 0.0 4 0.0 6.914645310963893E-5 0.0 3.07317569376173E-5 0.0 5 0.0 6.914645310963893E-5 0.0 3.07317569376173E-5 0.0 6 7.682939234404325E-5 6.914645310963893E-5 0.0 3.07317569376173E-5 0.0 7 7.682939234404325E-5 6.914645310963893E-5 0.0 3.07317569376173E-5 0.0 8 7.682939234404325E-5 7.682939234404325E-5 0.0 3.841469617202162E-5 0.0 9 7.682939234404325E-5 1.1524408851606488E-4 0.0 6.914645310963893E-5 0.0 10-11 7.682939234404325E-5 1.1524408851606488E-4 0.0 1.1908555813326704E-4 0.0 12-13 7.682939234404325E-5 1.1908555813326704E-4 0.0 1.3445143660207568E-4 0.0 14-15 8.451233157844758E-5 1.4213437583648003E-4 0.0 1.5750025430528867E-4 0.0 16-17 1.4213437583648003E-4 1.4597584545368217E-4 0.0 1.6902466315689513E-4 0.0 18-19 1.5750025430528867E-4 1.65183193539693E-4 0.0 1.728661327740973E-4 0.0 20-21 1.613417239224908E-4 1.843905416257038E-4 0.0 1.9975642009451244E-4 0.0 22-23 1.9207348086010812E-4 2.1512229856332108E-4 0.0 2.458540555009384E-4 0.0 24-25 2.3432964664933193E-4 2.4201258588373625E-4 0.0 2.765858124385557E-4 0.0 26-27 2.6121993396974706E-4 2.650614035869492E-4 0.0 3.2652491746218383E-4 0.0 28-29 2.6121993396974706E-4 2.8426875167296005E-4 0.0 4.5329341482985516E-4 0.0 30-31 2.650614035869492E-4 3.1500050861057733E-4 0.0 9.411600562145299E-4 7.682939234404326E-6 32-33 2.881102212901622E-4 3.188419782277795E-4 0.0 0.0021896376818052324 7.682939234404326E-6 34-35 3.380493263137903E-4 3.803054921030141E-4 0.0 0.003714701119834491 7.682939234404326E-6 36-37 3.687810832514076E-4 4.379275363610465E-4 0.0 0.006046473177476204 7.682939234404326E-6 38-39 3.687810832514076E-4 4.5329341482985516E-4 0.0 0.009707393722669863 7.682939234404326E-6 40-41 3.764640224858119E-4 5.147569287050897E-4 0.0 0.013618009792981665 7.682939234404326E-6 42-43 3.764640224858119E-4 5.570130944943135E-4 0.0 0.017624662603723522 7.682939234404326E-6 44-45 3.918299009546206E-4 6.338424868383569E-4 0.0 0.022172962630490883 7.682939234404326E-6 46-47 4.225616578922379E-4 6.760986526275805E-4 0.0 0.027274434282135353 7.682939234404326E-6 48-49 4.225616578922379E-4 6.837815918619848E-4 0.0 0.03229907654143578 7.682939234404326E-6 50-51 4.225616578922379E-4 7.990256803780498E-4 0.0 0.037481219055041495 7.682939234404326E-6 52-53 4.225616578922379E-4 8.143915588468585E-4 0.0 0.04268256891673323 7.682939234404326E-6 54-55 4.225616578922379E-4 8.143915588468585E-4 0.0 0.04772257705450246 7.682939234404326E-6 56-57 4.2640312750944E-4 8.143915588468585E-4 0.0 0.05215947446237096 7.682939234404326E-6 58-59 4.3408606674384437E-4 8.182330284640606E-4 0.0 0.05660021333985666 7.682939234404326E-6 60-61 4.379275363610465E-4 8.297574373156671E-4 0.0 0.061148513366624024 7.682939234404326E-6 62-63 4.4561047559545086E-4 8.374403765500715E-4 0.0 0.06591961863118911 7.682939234404326E-6 64-65 4.4561047559545086E-4 9.065868296597103E-4 0.0 0.0705216992325973 7.682939234404326E-6 66-67 4.609763540642595E-4 9.411600562145298E-4 0.0 0.07519292628711513 7.682939234404326E-6 68-69 4.7250076291586595E-4 9.603674043005406E-4 0.0 0.08004854388325866 7.682939234404326E-6 70-71 4.801837021502703E-4 9.834162220037535E-4 0.0 0.08409745285978974 7.682939234404326E-6 72-73 5.032325198534833E-4 9.910991612381579E-4 0.0 0.08787361749349946 7.682939234404326E-6 74-75 5.070739894706854E-4 0.001017989448558573 0.0 0.09082386615951073 7.682939234404326E-6 76-77 5.070739894706854E-4 0.0010756114928166054 0.0 0.09365887073700593 7.682939234404326E-6 78-79 5.147569287050897E-4 0.0010986603105198184 0.0 0.0955757640759898 7.682939234404326E-6 80-81 5.147569287050897E-4 0.001114026188988627 0.0 0.09625570419823459 7.682939234404326E-6 82-83 5.224398679394941E-4 0.0011255505978402336 0.0 0.09665905850804081 7.682939234404326E-6 84-85 5.378057464083027E-4 0.0011293920674574358 0.0 0.0968204002319633 7.682939234404326E-6 86-87 5.454886856427071E-4 0.0011447579459262444 0.0 0.09687802227622133 7.682939234404326E-6 88 5.608545641115157E-4 0.001183172642098266 0.0 0.09688186374583854 7.682939234404326E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17825 0.0 50.172283 1 GTATCAA 32440 0.0 37.26578 1 TCAACGC 38760 0.0 30.524515 4 ATCAACG 39280 0.0 30.18572 3 CAACGCA 39980 0.0 29.626665 5 TATCAAC 40500 0.0 29.53109 2 AACGCAG 40990 0.0 28.949083 6 ACGCAGA 46675 0.0 25.386263 7 CGCAGAG 47630 0.0 24.85038 8 GTGGTAT 8735 0.0 21.598469 1 GCAGAGT 55040 0.0 21.357082 9 GTACATG 42735 0.0 21.269045 1 TACATGG 43230 0.0 20.558273 2 GAGTACT 30135 0.0 20.32271 12-13 TGGTATC 8840 0.0 19.932093 2 ACATGGG 44110 0.0 19.505106 3 CTTATAC 7865 0.0 19.069883 1 CAGAGTA 54015 0.0 18.965368 10-11 AGAGTAC 50095 0.0 18.390335 10-11 GTACTTT 33940 0.0 17.94982 14-15 >>END_MODULE