##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139514_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6164015 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.521575466639845 33.0 33.0 33.0 33.0 33.0 2 32.560136372153536 33.0 33.0 33.0 33.0 33.0 3 32.58174679977255 33.0 33.0 33.0 33.0 33.0 4 36.48939952287592 37.0 37.0 37.0 37.0 37.0 5 36.512382108090264 37.0 37.0 37.0 37.0 37.0 6 36.497652098510464 37.0 37.0 37.0 37.0 37.0 7 36.47639874335153 37.0 37.0 37.0 37.0 37.0 8 36.468808073958286 37.0 37.0 37.0 37.0 37.0 9 36.51087578469553 37.0 37.0 37.0 37.0 37.0 10-11 36.43041962097756 37.0 37.0 37.0 37.0 37.0 12-13 36.431131089071 37.0 37.0 37.0 37.0 37.0 14-15 38.42560149512939 40.0 37.0 40.0 37.0 40.0 16-17 38.36667894221542 40.0 37.0 40.0 37.0 40.0 18-19 38.363631172214866 40.0 37.0 40.0 37.0 40.0 20-21 38.36193406830037 40.0 37.0 40.0 37.0 40.0 22-23 38.35807009950924 40.0 37.0 40.0 37.0 40.0 24-25 38.343437627102915 40.0 37.0 40.0 37.0 40.0 26-27 38.231751457809054 40.0 37.0 40.0 37.0 40.0 28-29 38.16754893487388 40.0 37.0 40.0 37.0 40.0 30-31 38.037936786128135 40.0 37.0 40.0 33.0 40.0 32-33 38.029845000180295 40.0 37.0 40.0 33.0 40.0 34-35 37.979863139426655 40.0 37.0 40.0 33.0 40.0 36-37 37.88400204450643 40.0 37.0 40.0 33.0 40.0 38-39 37.81898954974672 40.0 37.0 40.0 33.0 40.0 40-41 37.83798739825784 40.0 37.0 40.0 33.0 40.0 42-43 37.77140263375214 40.0 37.0 40.0 33.0 40.0 44-45 37.70749076231383 40.0 37.0 40.0 33.0 40.0 46-47 37.66593689122311 40.0 37.0 40.0 33.0 40.0 48-49 37.6383798405718 40.0 37.0 40.0 33.0 40.0 50-51 37.51805625618202 40.0 37.0 40.0 33.0 40.0 52-53 37.43187357538312 40.0 37.0 40.0 33.0 40.0 54-55 37.286627257526675 40.0 37.0 40.0 33.0 40.0 56-57 37.15605720621279 38.5 37.0 40.0 33.0 40.0 58-59 37.00268055502943 37.0 37.0 40.0 33.0 40.0 60-61 36.88086549966839 37.0 37.0 40.0 33.0 40.0 62-63 36.73293013083387 37.0 37.0 40.0 33.0 40.0 64-65 36.57623013572359 37.0 37.0 40.0 33.0 40.0 66-67 36.35374132409503 37.0 37.0 40.0 33.0 40.0 68-69 36.12268652928499 37.0 37.0 40.0 33.0 40.0 70-71 35.87666053850697 37.0 35.0 37.0 33.0 40.0 72-73 35.674944398855466 37.0 33.0 37.0 33.0 40.0 74-75 35.44811763588472 37.0 33.0 37.0 33.0 40.0 76-77 33.73339069400923 35.0 33.0 37.0 27.0 37.0 78-79 34.925493822603 37.0 33.0 37.0 33.0 37.0 80-81 34.990468776642516 37.0 33.0 37.0 33.0 37.0 82-83 34.83954418069432 37.0 33.0 37.0 33.0 37.0 84-85 34.71708989097917 37.0 33.0 37.0 33.0 37.0 86-87 34.598122986739156 37.0 33.0 37.0 33.0 37.0 88-89 34.43078043340846 37.0 33.0 37.0 30.0 37.0 90-91 34.4499193731975 37.0 33.0 37.0 33.0 37.0 92-93 34.39582857797371 37.0 33.0 37.0 33.0 37.0 94-95 34.351442028106796 37.0 33.0 37.0 27.0 37.0 96-97 34.35804782202612 37.0 33.0 37.0 30.0 37.0 98-99 34.37322811906294 37.0 33.0 37.0 33.0 37.0 100 34.37914110458961 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 7.0 20 72.0 21 278.0 22 1159.0 23 3232.0 24 6945.0 25 13701.0 26 23391.0 27 36489.0 28 53834.0 29 75122.0 30 100517.0 31 132919.0 32 174856.0 33 231901.0 34 317298.0 35 457332.0 36 786160.0 37 1780307.0 38 1925417.0 39 43074.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.850435957732095 20.42188411287124 14.398975343181352 24.328704586215316 2 14.38138940284863 20.79198379627564 41.83083590808913 22.9957908927866 3 17.5996975996976 26.384085697390418 31.03118665350425 24.98503004940773 4 12.256702814642729 18.719519663725674 38.19893364957743 30.824843872054174 5 13.27655756840306 37.794051442120114 35.757992152841936 13.171398836634888 6 29.686912668220742 37.864233916975 18.758406677223665 13.690446737580587 7 26.31166536745936 32.62756498808001 22.62155429537404 18.439215349086595 8 24.563145936536497 36.47972952693983 21.24740124740125 17.70972328912243 9 25.380458253339466 16.709111952049426 20.520037754618986 37.39039203999212 10-11 24.12875818133368 26.412802811251655 28.962008435539587 20.49643057187507 12-13 25.19910529058791 23.808785267713198 28.669774761164096 22.322334680534798 14-15 22.319185225239433 25.367054718769705 25.84343616981753 26.47032388617333 16-17 22.19713936452134 28.814855252623495 26.430621924184155 22.557383458671012 18-19 22.383024700621267 27.610623919636794 27.984536053205584 22.021815326536355 20-21 22.91740298002595 26.731539304227987 27.923598354768046 22.427459360978023 22-23 22.553393471194603 27.228845016236185 27.730743807713736 22.487017704855475 24-25 22.644820953839126 27.257070504839298 27.753345642034255 22.34476289928732 26-27 22.597288484785324 27.399286450199313 27.894403135346717 22.109021929668643 28-29 22.456940339306577 26.92928578220229 28.144799951345977 22.468973927145154 30-31 22.333014788675502 26.664187230786013 28.318755539921813 22.68404244061667 32-33 22.024896418269726 27.273558523209424 28.136450558664723 22.565094499856126 34-35 22.50094715348751 27.05061382564965 28.13959140753456 22.308847613328282 36-37 22.312474833721378 27.166977813384197 28.247855405178214 22.272691947716215 38-39 22.27493368072315 26.92126155901922 28.165528903630886 22.638275856626734 40-41 22.477521190944497 26.77813849910118 28.306643853852137 22.437696456102188 42-43 22.612617152447427 26.718565893734958 28.216275872786927 22.452541081030684 44-45 22.230527549683067 27.168112512375114 28.01172633492864 22.589633603013183 46-47 22.81260152517016 26.702191318430597 27.541575530852956 22.94363162554629 48-49 22.53450572196914 26.91788189584235 27.56487584726711 22.982736534921404 50-51 22.28586899336563 27.154513900750892 27.698151463182995 22.86146564270048 52-53 22.379007495830177 27.08854686003016 27.956119955894188 22.576325688245475 54-55 22.438819413517415 26.992186692032146 27.699492882094205 22.86950101235623 56-57 22.67671542459549 27.045206497636652 27.345400313804163 22.932677763963692 58-59 22.066167449900508 27.17257692238278 27.945848535375312 22.8154070923414 60-61 22.57163929259641 27.624401501291363 27.481125526495266 22.32283367961696 62-63 21.978816601749195 27.980873136605673 27.48985040492093 22.550459856724206 64-65 21.95904616324089 27.948578729492446 27.31774295061381 22.77463215665285 66-67 22.084709356683646 28.0937905051944 27.02428963640326 22.797210501718695 68-69 22.15247941657054 27.959823502616416 26.966316376319256 22.921380704493792 70-71 22.21699279289558 27.49925581198044 26.951747360783813 23.332004034340162 72-73 22.36874074139618 27.158291616617667 26.915060858844498 23.557906783141654 74-75 22.44746404334173 27.22713383259392 27.02753181009142 23.297870313972933 76-77 22.709887525208842 27.091360503926644 26.652019466758343 23.54673250410617 78-79 22.81435755275327 27.128859873194088 26.28315954911102 23.77362302494162 80-81 22.725480794538296 27.441259109901672 26.394559730362932 23.438700365197104 82-83 22.722094652339393 27.242624953721556 26.46899763058222 23.56628276335683 84-85 22.782344607161022 27.519647147090254 26.4222089955495 23.275799250199224 86-87 23.057084732940197 27.445370943151094 26.520261951862743 22.977282372045966 88-89 22.910422936828486 27.509141831506422 26.759359003281663 22.82107622838343 90-91 22.874288759862235 27.31030814667232 26.632064499204645 23.183338594260803 92-93 22.871022503990396 26.94969256380751 26.87433394067358 23.30495099152852 94-95 22.300172433688726 27.271828761807637 27.308740637558294 23.119258166945347 96-97 22.457580563590785 27.197702544369417 27.416226278370132 22.928490613669663 98-99 23.700437978649486 29.016994980965556 27.780505500071957 19.502061540313004 100 22.62189099959928 30.18605295553173 21.46358194753322 25.728474097335774 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1036.0 1 942.5 2 1268.0 3 1773.0 4 2344.0 5 3779.5 6 5000.5 7 5679.0 8 5994.0 9 5832.5 10 5452.0 11 5093.0 12 5582.5 13 7372.0 14 11770.0 15 18162.0 16 23795.0 17 27486.0 18 28616.0 19 27343.0 20 24490.5 21 21426.0 22 19443.5 23 19482.0 24 22158.5 25 27331.5 26 34710.0 27 43817.5 28 54115.5 29 66527.0 30 79890.0 31 93667.5 32 108819.0 33 124413.5 34 140160.0 35 154870.0 36 170332.0 37 184458.5 38 195294.0 39 205924.5 40 216852.5 41 225490.0 42 229992.5 43 235197.5 44 241595.0 45 247424.5 46 251958.0 47 256135.0 48 274553.0 49 283285.5 50 272660.5 51 265975.0 52 258358.5 53 243352.5 54 223601.5 55 204740.0 56 186634.5 57 168592.0 58 148912.0 59 127351.5 60 105293.5 61 85447.5 62 67850.5 63 52165.5 64 38793.0 65 28480.0 66 21514.5 67 16503.0 68 12746.5 69 9413.0 70 6664.0 71 4841.5 72 3430.0 73 2354.0 74 1540.5 75 970.5 76 641.0 77 409.5 78 270.5 79 187.5 80 125.5 81 78.0 82 55.0 83 34.0 84 22.0 85 19.5 86 19.5 87 19.0 88 16.0 89 10.5 90 6.5 91 4.0 92 3.0 93 3.0 94 3.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.595710750217188E-4 7 0.0 8 0.0 9 1.6223192188857426E-5 10-11 0.0034474283401322026 12-13 4.055798047214356E-5 14-15 0.0024659252127063286 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 366.0 22-23 768.0 24-25 1800.0 26-27 2325.0 28-29 4345.0 30-31 10438.0 32-33 13513.0 34-35 18760.0 36-37 26673.0 38-39 20189.0 40-41 33003.0 42-43 38255.0 44-45 44787.0 46-47 44190.0 48-49 40794.0 50-51 23429.0 52-53 10863.0 54-55 16032.0 56-57 18837.0 58-59 34680.0 60-61 54977.0 62-63 56243.0 64-65 57167.0 66-67 64106.0 68-69 46849.0 70-71 45005.0 72-73 43574.0 74-75 45102.0 76-77 43834.0 78-79 47435.0 80-81 49509.0 82-83 47813.0 84-85 48687.0 86-87 51611.0 88-89 55286.0 90-91 59476.0 92-93 63759.0 94-95 77653.0 96-97 228525.0 98-99 415745.0 100-101 4157526.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.621597581556 #Duplication Level Percentage of deduplicated Percentage of total 1 90.21249414837038 78.14350364948614 2 7.167879137113417 12.417862842565384 3 1.5810940264216982 4.108706714859072 4 0.5143275954713236 1.7820751200002525 5 0.21857131776257324 0.9466498365050011 6 0.10991900051331958 0.5712815657418969 7 0.05735190207145242 0.3477539367239111 8 0.036297425956080445 0.251531281953114 9 0.024382395295687767 0.19008378300397408 >10 0.07535434635754046 1.0094485146773433 >50 0.0015870543867050827 0.08960548346639151 >100 7.416502798602237E-4 0.1414972710174917 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.244638437771485E-5 0.0 0.0 0.0 3 0.0 3.244638437771485E-5 0.0 0.0 0.0 4 0.0 3.244638437771485E-5 0.0 0.0 1.6223192188857426E-5 5 0.0 3.244638437771485E-5 0.0 0.0 1.6223192188857426E-5 6 1.1356234532200197E-4 3.244638437771485E-5 0.0 1.6223192188857426E-5 1.6223192188857426E-5 7 1.1356234532200197E-4 3.244638437771485E-5 0.0 1.6223192188857426E-5 1.6223192188857426E-5 8 1.1356234532200197E-4 3.244638437771485E-5 0.0 1.6223192188857426E-5 4.8669576566572275E-5 9 1.1356234532200197E-4 8.111596094428713E-5 0.0 1.6223192188857426E-5 4.8669576566572275E-5 10-11 1.1356234532200197E-4 8.111596094428713E-5 0.0 5.6781172661000986E-5 4.8669576566572275E-5 12-13 1.1356234532200197E-4 8.111596094428713E-5 0.0 6.48927687554297E-5 4.8669576566572275E-5 14-15 1.1356234532200197E-4 1.297855375108594E-4 0.0 6.48927687554297E-5 7.300436484985841E-5 16-17 1.4600872969971682E-4 1.297855375108594E-4 0.0 7.300436484985841E-5 8.111596094428713E-5 18-19 1.4600872969971682E-4 1.6223192188857425E-4 0.0 8.111596094428713E-5 8.111596094428713E-5 20-21 1.4600872969971682E-4 1.946783062662891E-4 0.0 1.0545074922757325E-4 8.111596094428713E-5 22-23 1.6223192188857425E-4 2.2712469064400394E-4 0.0 1.5412032579414554E-4 8.111596094428713E-5 24-25 1.8656671017186038E-4 2.2712469064400394E-4 0.0 2.7579426721057625E-4 8.922755703871584E-5 26-27 1.946783062662891E-4 2.2712469064400394E-4 0.0 5.840349187988673E-4 9.733915313314455E-5 28-29 1.946783062662891E-4 2.2712469064400394E-4 0.0 0.0016385424110746 1.1356234532200197E-4 30-31 1.946783062662891E-4 2.4334788283286138E-4 0.0 0.005840349187988673 1.297855375108594E-4 32-33 1.946783062662891E-4 2.4334788283286138E-4 0.0 0.014795551276237972 1.4600872969971682E-4 34-35 2.1090149845514654E-4 3.001290554938623E-4 0.0 0.02612745102015488 1.4600872969971682E-4 36-37 2.2712469064400394E-4 3.6502182424929207E-4 0.0 0.04548983089755622 1.4600872969971682E-4 38-39 2.2712469064400394E-4 3.893566125325782E-4 0.0 0.16582535895840617 1.6223192188857425E-4 40-41 2.3523628673843266E-4 4.2180299691029307E-4 0.0 0.2937371177714525 1.6223192188857425E-4 42-43 2.5145947892729007E-4 4.380261890991505E-4 0.0 0.3307827771347085 1.6223192188857425E-4 44-45 2.595710750217188E-4 4.704725734768653E-4 0.0 0.37997149585132417 1.6223192188857425E-4 46-47 2.595710750217188E-4 4.8669576566572276E-4 0.0 0.4289330898772959 1.7034351798300294E-4 48-49 2.676826711161475E-4 4.8669576566572276E-4 0.0 0.4743093584295301 1.7845511407743166E-4 50-51 2.9201745939943363E-4 5.840349187988673E-4 0.0 0.51676545238777 1.946783062662891E-4 52-53 2.9201745939943363E-4 5.840349187988673E-4 0.0 0.8834501538364199 2.109014984551465E-4 54-55 2.9201745939943363E-4 6.002581109877247E-4 0.0 1.3777627082348114 2.2712469064400394E-4 56-57 2.9201745939943363E-4 6.164813031765821E-4 0.0 1.9205177145091308 2.5145947892729007E-4 58-59 2.9201745939943363E-4 6.164813031765821E-4 0.0 2.4813940264584042 2.595710750217188E-4 60-61 3.163522476827198E-4 6.327044953654396E-4 0.0 2.639399806781781 2.595710750217188E-4 62-63 4.0557980472143563E-4 6.570392836487257E-4 0.0 2.645832302484663 2.595710750217188E-4 64-65 4.136914008158643E-4 7.462668406874415E-4 0.0 2.650926384831964 2.595710750217188E-4 66-67 4.2991459300472176E-4 7.543784367818702E-4 0.0 2.6547956161690065 2.595710750217188E-4 68-69 4.3802618909915045E-4 7.706016289707277E-4 0.0 2.658891972196693 2.676826711161475E-4 70-71 4.461377851935792E-4 7.787132250651564E-4 0.0 2.662866654282963 2.757942672105762E-4 72-73 5.029189578545801E-4 7.787132250651564E-4 0.0 2.66575438249258 2.9201745939943363E-4 74-75 5.029189578545801E-4 8.030480133484426E-4 0.0 2.668041852591209 3.0824065158829107E-4 76-77 5.029189578545801E-4 8.192712055373E-4 0.0 2.6707754604750313 3.0824065158829107E-4 78-79 5.029189578545801E-4 8.273828016317286E-4 0.0 2.6721706550032733 3.0824065158829107E-4 80-81 5.029189578545801E-4 8.273828016317286E-4 0.0 2.67264112757675 3.163522476827198E-4 82-83 5.029189578545801E-4 8.354943977261573E-4 0.0 2.6731197117463212 3.244638437771485E-4 84-85 5.029189578545801E-4 8.598291860094435E-4 0.0 2.6733468364369655 3.244638437771485E-4 86-87 5.110305539490088E-4 9.084987625760158E-4 0.0 2.6734198408018153 3.4879863206043463E-4 88 5.191421500434376E-4 9.733915313314455E-4 0.0 2.6734198408018153 3.7313342034372076E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7255 0.0 47.49831 1 GTATCAA 12780 0.0 36.76604 1 TCAACGC 15415 0.0 29.75073 4 ATCAACG 15595 0.0 29.462452 3 CAACGCA 15815 0.0 29.08261 5 TATCAAC 16380 0.0 28.447428 2 AACGCAG 16185 0.0 28.390976 6 ACGCAGA 18520 0.0 24.811445 7 CGCAGAG 19050 0.0 24.076033 8 GTACATG 18725 0.0 22.894064 1 TACATGG 18815 0.0 22.554173 2 ACATGGG 19140 0.0 21.401209 3 GCAGAGT 22400 0.0 20.476206 9 GAGTACT 11755 0.0 19.54458 12-13 CATGGGG 13935 0.0 18.757105 4 AGAGTAC 20065 0.0 18.570135 10-11 CTTATAC 23905 0.0 18.277643 1 CAGAGTA 21840 0.0 18.241947 10-11 TATACAC 26350 0.0 17.766077 3 GTGGTAT 4060 0.0 17.61596 1 >>END_MODULE