##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139513_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5488636 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.497145738941335 33.0 33.0 33.0 33.0 33.0 2 32.539693832857566 33.0 33.0 33.0 33.0 33.0 3 32.55905365194558 33.0 33.0 33.0 33.0 33.0 4 36.459638059437715 37.0 37.0 37.0 37.0 37.0 5 36.480485497671914 37.0 37.0 37.0 37.0 37.0 6 36.46726891708614 37.0 37.0 37.0 37.0 37.0 7 36.44332417015812 37.0 37.0 37.0 37.0 37.0 8 36.43401493558691 37.0 37.0 37.0 37.0 37.0 9 36.48177689320261 37.0 37.0 37.0 37.0 37.0 10-11 36.39724979029398 37.0 37.0 37.0 37.0 37.0 12-13 36.39924564135789 37.0 37.0 37.0 37.0 37.0 14-15 38.35662867787188 40.0 37.0 40.0 37.0 40.0 16-17 38.2919426611639 40.0 37.0 40.0 37.0 40.0 18-19 38.286442660799516 40.0 37.0 40.0 37.0 40.0 20-21 38.289905066138 40.0 37.0 40.0 37.0 40.0 22-23 38.282376924269876 40.0 37.0 40.0 37.0 40.0 24-25 38.2657432650953 40.0 37.0 40.0 37.0 40.0 26-27 38.134589593678456 40.0 37.0 40.0 35.0 40.0 28-29 38.03995422104527 40.0 37.0 40.0 33.0 40.0 30-31 37.91736897793674 40.0 37.0 40.0 33.0 40.0 32-33 37.90907705906912 40.0 37.0 40.0 33.0 40.0 34-35 37.84231491953064 40.0 37.0 40.0 33.0 40.0 36-37 37.75985047011578 40.0 37.0 40.0 33.0 40.0 38-39 37.6692539638146 40.0 37.0 40.0 33.0 40.0 40-41 37.69983271319962 40.0 37.0 40.0 33.0 40.0 42-43 37.65647853737808 40.0 37.0 40.0 33.0 40.0 44-45 37.59523525921234 40.0 37.0 40.0 33.0 40.0 46-47 37.55925663182289 40.0 37.0 40.0 33.0 40.0 48-49 37.555491275940135 40.0 37.0 40.0 33.0 40.0 50-51 37.40858833852167 40.0 37.0 40.0 33.0 40.0 52-53 37.324826518489246 40.0 37.0 40.0 33.0 40.0 54-55 37.18332593275184 40.0 37.0 40.0 33.0 40.0 56-57 37.05817220640033 37.0 37.0 40.0 33.0 40.0 58-59 36.90848499584255 37.0 37.0 40.0 33.0 40.0 60-61 36.790191101666714 37.0 37.0 40.0 33.0 40.0 62-63 36.63689839733992 37.0 37.0 40.0 33.0 40.0 64-65 36.485413516780596 37.0 37.0 40.0 33.0 40.0 66-67 36.26780642174799 37.0 37.0 40.0 33.0 40.0 68-69 36.043352907449304 37.0 37.0 40.0 33.0 40.0 70-71 35.7978956794641 37.0 35.0 37.0 33.0 40.0 72-73 35.596172424803115 37.0 33.0 37.0 33.0 40.0 74-75 35.380386763537075 37.0 33.0 37.0 33.0 40.0 76-77 33.68322319139301 35.0 33.0 37.0 27.0 37.0 78-79 34.889777531784404 37.0 33.0 37.0 33.0 37.0 80-81 34.965744505014044 37.0 33.0 37.0 33.0 37.0 82-83 34.8146385743179 37.0 33.0 37.0 33.0 37.0 84-85 34.68259555490424 37.0 33.0 37.0 33.0 37.0 86-87 34.57285401356083 37.0 33.0 37.0 33.0 37.0 88-89 34.405812422449415 37.0 33.0 37.0 27.0 37.0 90-91 34.418975446474256 37.0 33.0 37.0 30.0 37.0 92-93 34.359686047863725 37.0 33.0 37.0 30.0 37.0 94-95 34.336425751666766 37.0 33.0 37.0 27.0 37.0 96-97 34.347773788482556 37.0 33.0 37.0 30.0 37.0 98-99 34.34081495629829 37.0 33.0 37.0 33.0 37.0 100 34.36480710409582 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 4.0 20 67.0 21 355.0 22 1227.0 23 3357.0 24 7115.0 25 13320.0 26 22944.0 27 35100.0 28 51288.0 29 70399.0 30 94353.0 31 123380.0 32 162025.0 33 214935.0 34 291990.0 35 418036.0 36 707318.0 37 1563827.0 38 1670700.0 39 36895.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.342810126231726 20.664004681673187 14.560703242116984 24.4324819499781 2 14.231131377631892 20.706692883259155 42.03279284689311 23.029382892215843 3 17.563744434865054 26.444183946612597 31.129282393658457 24.86278922486388 4 12.16426084732163 18.740302690868916 37.97192963789182 31.123506823917634 5 13.254914335729314 37.70747413382851 35.647745632976935 13.389865897465237 6 29.595617842007645 37.80400173449793 18.719295560632727 13.881084862861703 7 26.117071709619662 32.70038311886596 22.44672446852005 18.73582070299433 8 24.543383820679672 36.50119993382691 21.27034840714524 17.68506783834818 9 25.02530683397478 16.73550587067534 20.48519887272539 37.75398842262449 10-11 23.976670998492743 26.457281407902688 28.746717537154176 20.81933005645039 12-13 25.088851781909344 23.82831068198195 28.478255522547958 22.604582013560748 14-15 22.36724562863339 25.4335928881128 25.588070403922675 26.611091079331135 16-17 22.214526523529706 28.94509674170413 26.214044800930502 22.626331933835655 18-19 22.243203958141876 27.556391059636674 27.761851942814207 22.438553039407243 20-21 22.98620102784218 26.783339347436 27.674449896360354 22.556009728361463 22-23 22.68766645812282 27.50608617316027 27.466973952244828 22.339273416472086 24-25 22.780889771807658 27.757559156666172 27.49876141392266 21.96278965760351 26-27 22.719908803188606 27.95187556076222 27.489501674436095 21.838713961613077 28-29 22.263729665218825 27.173261355347467 27.794556670898984 22.76845230853472 30-31 23.196128096361214 27.277329251943506 27.71688507671093 21.809657574984353 32-33 23.00932590621885 27.338402774036584 27.969779457652105 21.682491862092455 34-35 22.61021678991319 27.50057854898082 28.233868752450352 21.655335908655644 36-37 22.736413253495364 27.075955865845714 27.822440259534737 22.365190621124185 38-39 22.291888431457192 26.864925352503732 28.248534237401717 22.594651978637355 40-41 22.2766494666412 26.72990847876208 28.530357510499638 22.463084544097082 42-43 22.56882946670543 26.651659470005395 28.47030360593395 22.309207457355225 44-45 22.150240412446514 27.074097410857444 28.207079069254338 22.568583107441707 46-47 22.846302870685385 26.62608606553489 27.468449784352305 23.059161279427418 48-49 22.484659145768468 26.70463442450407 27.80211134511019 23.008595084617276 50-51 22.266123927845957 27.13040038958886 27.87441651693466 22.72905916563053 52-53 22.367597274117664 27.292452203177405 28.126090563175786 22.213859959529145 54-55 22.331303987816124 27.325146494111163 27.569485443458557 22.774064074614152 56-57 22.74878954633576 27.613832073819534 27.083667498596633 22.55371088124808 58-59 22.153511047355696 27.898100216327855 27.773302570063958 22.1750861662525 60-61 22.62247034025799 28.347534685216868 26.882393845380076 22.147601129145063 62-63 22.28618207386622 28.592895442794603 26.902526485183888 22.218395998155295 64-65 22.380097530899544 28.19487379365315 26.985697116877088 22.43933155857021 66-67 22.53405108355901 27.897908918655613 26.959925866316926 22.608114131468454 68-69 22.544903037672892 27.64682841917422 27.162854463182907 22.64541407996998 70-71 22.55661491684866 27.382174899438144 27.261047182593888 22.80016300111931 72-73 22.62781473820416 27.394064523738255 27.105157843704724 22.872962894352863 74-75 22.57605813373987 27.561125851132566 27.066793892924217 22.79602212220334 76-77 22.686126534761865 27.47937358254477 27.03324991527854 22.801249967414822 78-79 22.632270317044746 27.461552947290595 27.009279788544088 22.896896947120577 80-81 22.62239846862594 27.534878742631502 27.00704253384379 22.83568025489877 82-83 22.713958123419438 27.482011127883137 27.115055774489903 22.68897497420752 84-85 22.740357540524663 27.5349111196595 26.99432313318158 22.730408206634255 86-87 22.60719920277613 27.481946927362543 27.148276108052094 22.76257776180923 88-89 22.686966528728878 27.460658065704468 27.10559789196747 22.74677751359918 90-91 22.712976127135867 27.545267148717677 27.084684558958212 22.65707216518824 92-93 22.76109597247353 27.51734533079519 27.087938896209646 22.633619800521632 94-95 22.586343348879296 27.524539500149807 27.215012933746035 22.674104217224862 96-97 22.70700516759692 27.590706846913744 27.254198292075742 22.448089693413596 98-99 23.837153177294372 29.47258887812893 27.482218812523495 19.2080391320532 100 22.72357732606827 30.498777185683412 21.29870988091721 25.47893560733111 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 917.0 1 821.0 2 1085.0 3 1504.0 4 2012.5 5 3348.5 6 4445.0 7 5060.0 8 5381.5 9 5231.0 10 4896.5 11 4558.0 12 5014.5 13 6725.5 14 10873.0 15 16795.5 16 21933.5 17 25309.0 18 26294.0 19 24860.0 20 22164.0 21 19556.0 22 17924.5 23 18261.0 24 20881.5 25 25892.0 26 33139.0 27 41641.0 28 51037.5 29 62416.0 30 74569.5 31 86888.0 32 100743.0 33 115084.5 34 129557.5 35 143327.0 36 157580.0 37 170449.0 38 180273.0 39 188691.5 40 196305.5 41 202146.0 42 205630.0 43 210445.5 44 215351.0 45 219633.0 46 223909.0 47 228701.5 48 247860.0 49 256879.5 50 246358.0 51 242978.5 52 239556.0 53 225098.5 54 204014.0 55 184976.5 56 168163.5 57 151913.5 58 135156.0 59 116229.0 60 96758.5 61 79134.5 62 62821.5 63 48118.0 64 35297.5 65 25753.0 66 19078.5 67 14289.5 68 10904.0 69 8153.5 70 5807.0 71 4002.0 72 2764.5 73 1888.5 74 1248.5 75 807.5 76 508.0 77 313.0 78 214.5 79 156.5 80 107.5 81 67.0 82 44.5 83 29.0 84 20.5 85 16.5 86 12.0 87 9.5 88 7.5 89 5.5 90 4.5 91 3.5 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 2.9151140647694617E-4 7 0.0 8 0.0 9 0.0 10-11 0.0034343687575565224 12-13 1.8219462904809136E-5 14-15 0.0024596274921492335 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 82.0 20-21 346.0 22-23 715.0 24-25 1623.0 26-27 2570.0 28-29 4151.0 30-31 9809.0 32-33 12351.0 34-35 16811.0 36-37 25356.0 38-39 28260.0 40-41 29834.0 42-43 34930.0 44-45 41440.0 46-47 40408.0 48-49 37979.0 50-51 33229.0 52-53 33370.0 54-55 43848.0 56-57 50542.0 58-59 48970.0 60-61 53378.0 62-63 53716.0 64-65 53575.0 66-67 60357.0 68-69 42108.0 70-71 39196.0 72-73 37865.0 74-75 39252.0 76-77 38157.0 78-79 41701.0 80-81 43292.0 82-83 41429.0 84-85 42147.0 86-87 45224.0 88-89 48543.0 90-91 51909.0 92-93 55743.0 94-95 68653.0 96-97 194846.0 98-99 339393.0 100-101 3601528.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.72927558793856 #Duplication Level Percentage of deduplicated Percentage of total 1 91.07926338883208 79.90317798185292 2 6.586821779858178 11.557142063476283 3 1.4161842584372077 3.7272245727521462 4 0.4475489241956586 1.5705257163938544 5 0.19201924213127672 0.8422854505560939 6 0.10292235526212694 0.5417582201370512 7 0.050901411713814966 0.3125880783239478 8 0.03256361653234642 0.22854259911249372 9 0.021364579001456774 0.1686869135135178 >10 0.0680868341444875 0.9163995791415755 >50 0.0016518759238076286 0.09494110817267082 >100 6.415943175812996E-4 0.12094226248296992 >500 3.013965001605615E-5 0.015785454084424166 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.8219462904809136E-5 0.0 0.0 0.0 4 0.0 7.287785161923654E-5 0.0 0.0 0.0 5 1.8219462904809136E-5 7.287785161923654E-5 0.0 1.8219462904809136E-5 0.0 6 1.8219462904809136E-5 7.287785161923654E-5 0.0 1.8219462904809136E-5 0.0 7 1.8219462904809136E-5 7.287785161923654E-5 0.0 1.8219462904809136E-5 0.0 8 1.8219462904809136E-5 7.287785161923654E-5 0.0 1.8219462904809136E-5 0.0 9 1.8219462904809136E-5 1.2753624033366395E-4 0.0 5.465838871442741E-5 0.0 10-11 1.8219462904809136E-5 1.2753624033366395E-4 0.0 1.0931677742885481E-4 0.0 12-13 1.8219462904809136E-5 1.2753624033366395E-4 0.0 1.6397516614328223E-4 0.0 14-15 1.8219462904809136E-5 1.9130436050049593E-4 0.0 1.9130436050049593E-4 0.0 16-17 1.8219462904809136E-5 2.1863355485770964E-4 0.0 2.277432863101142E-4 0.0 18-19 1.8219462904809136E-5 2.277432863101142E-4 0.0 2.3685301776251878E-4 0.0 20-21 1.8219462904809136E-5 2.3685301776251878E-4 0.0 2.9151140647694617E-4 0.0 22-23 1.8219462904809136E-5 2.550724806673279E-4 0.0 3.2795033228656445E-4 1.8219462904809136E-5 24-25 1.8219462904809136E-5 2.6418221211973244E-4 0.0 3.8260872100099187E-4 3.643892580961827E-5 26-27 2.7329194357213702E-5 2.7329194357213703E-4 0.0 5.101449613346558E-4 3.643892580961827E-5 28-29 3.643892580961827E-5 3.006211379293507E-4 0.0 0.0013755694493130899 3.643892580961827E-5 30-31 3.643892580961827E-5 3.461697951913736E-4 0.0 0.0043635613657017885 3.643892580961827E-5 32-33 3.643892580961827E-5 3.461697951913736E-4 0.0 0.01108654317757636 5.465838871442741E-5 34-35 5.4658388714427404E-5 4.00828183905801E-4 0.0 0.02005962865819486 5.465838871442741E-5 36-37 7.287785161923654E-5 4.372671097154193E-4 0.0 0.03411594428925511 5.465838871442741E-5 38-39 7.287785161923654E-5 4.7370603552503756E-4 0.0 0.06498882418145419 5.465838871442741E-5 40-41 7.287785161923654E-5 5.28364424239465E-4 0.0 0.09717350540279954 5.465838871442741E-5 42-43 7.287785161923654E-5 5.739130815014877E-4 0.0 0.11835363102964015 5.465838871442741E-5 44-45 8.198758307164111E-5 6.650103960255335E-4 0.0 0.14364224554151522 5.465838871442741E-5 46-47 9.109731452404568E-5 7.287785161923655E-4 0.0 0.1677192657702205 6.376812016683197E-5 48-49 9.109731452404568E-5 7.469979790971747E-4 0.0 0.19001077863425447 9.109731452404568E-5 50-51 9.109731452404568E-5 8.01656367811602E-4 0.0 0.20964224991418634 9.109731452404568E-5 52-53 9.109731452404568E-5 8.107660992640066E-4 0.0 0.2523760001574162 1.0020704597645025E-4 54-55 9.109731452404568E-5 8.198758307164111E-4 0.0 0.30157765973185324 1.0931677742885482E-4 56-57 9.109731452404568E-5 8.380952936212203E-4 0.0 0.34909401898759546 1.0931677742885482E-4 58-59 9.109731452404568E-5 8.380952936212203E-4 0.0 0.37999422807415173 1.0931677742885482E-4 60-61 9.109731452404568E-5 8.380952936212203E-4 0.0 0.40220375335511405 1.0931677742885482E-4 62-63 9.109731452404568E-5 8.563147565260294E-4 0.0 0.4182277709798937 1.2753624033366395E-4 64-65 9.109731452404568E-5 9.838509968596934E-4 0.0 0.4237300487771461 1.2753624033366395E-4 66-67 9.109731452404568E-5 9.92960728312098E-4 0.0 0.42806628094849064 1.3664597178606852E-4 68-69 1.0931677742885482E-4 0.001011180191216907 0.0 0.43256648828597855 1.4575570323847309E-4 70-71 1.0931677742885482E-4 0.0010202899226693116 0.0 0.43659298958794135 1.4575570323847309E-4 72-73 1.0931677742885482E-4 0.0010202899226693116 0.0 0.43940789660673435 1.6397516614328223E-4 74-75 1.0931677742885482E-4 0.00105672884847893 0.0 0.4418493046359788 1.6397516614328223E-4 76-77 1.0931677742885482E-4 0.001138716431550571 0.0 0.4442087250821516 1.6397516614328223E-4 78-79 1.0931677742885482E-4 0.0011660456259077847 0.0 0.4458029280863224 1.6397516614328223E-4 80-81 1.0931677742885482E-4 0.0011660456259077847 0.0 0.44640417036218105 1.730848975956868E-4 82-83 1.0931677742885482E-4 0.0011660456259077847 0.0 0.44683232774044407 1.8219462904809136E-4 84-85 1.0931677742885482E-4 0.0011842650888125939 0.0 0.4470145223694922 1.8219462904809136E-4 86-87 1.0931677742885482E-4 0.001202484551717403 0.0 0.4471056196840162 1.8219462904809136E-4 88 1.0931677742885482E-4 0.0012389234775270212 0.0 0.447123839146921 1.8219462904809136E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6685 0.0 48.350273 1 CTTATAC 9975 0.0 47.27605 1 TATACAC 12275 0.0 40.228985 3 TTATACA 12270 0.0 39.44395 2 GTATCAA 11945 0.0 35.9357 1 TCAACGC 13970 0.0 30.08401 4 ATCAACG 14060 0.0 29.92184 3 CAACGCA 14230 0.0 29.446613 5 TACACAT 17395 0.0 28.85744 5 AACGCAG 14680 0.0 28.573084 6 TATCAAC 14955 0.0 28.531374 2 ACACATC 18070 0.0 26.691015 6 ACATCTC 19050 0.0 25.362823 8 ACGCAGA 16725 0.0 25.10496 7 ATACACA 20465 0.0 24.944288 4 CACATCT 19435 0.0 24.816397 7 CGCAGAG 17315 0.0 24.249521 8 CATCTCC 21985 0.0 21.821493 9 GCAGAGT 20340 0.0 20.412039 9 TGGTATC 3245 0.0 20.158363 2 >>END_MODULE